#translate.seqs
# NOTE: download TestReferences and TestFiles and put in same location as mothur executable
# final.fasta from MISeq_SOP
set.dir(input=./TestFiles, output=./TestResults/translate.seqs, tempdefault=./TestReferences)
set.logfile(name=translateseqs.logfile)
translate.seqs(fasta=final.fasta)
translate.seqs(fasta=final.fasta, stop=f)
translate.seqs(fasta=final.fasta, frames=1|-1|2|-2|3|-3)
#translate.seqs(fasta=unalignedDNA, amino=alignedAminoAcid)
quit()

