Package: abs-guide
Description-md5: c70e528b8b624e5738bdbd1b89e8b349
Description-en: The Advanced Bash-Scripting Guide
 An in-depth exploration of the art of shell scripting.
 .
 This tutorial assumes no previous knowledge of scripting or programming,
 but progresses rapidly toward an intermediate/advanced level of
 instruction ... all the while sneaking in little snippets of UNIX(R)
 wisdom and lore. It serves as a textbook, a manual for self-study, and a
 reference and source of knowledge on shell scripting techniques. The
 exercises and heavily-commented examples invite active reader
 participation, under the premise that the only way to really learn
 scripting is to write scripts.
 .
 This book is suitable for classroom use as a general introduction to
 programming concepts.

Package: afio
Description-md5: ca88467cccd23b8f150ff01185566a6c
Description-en: archive file manipulation program
 Afio manipulates groups of files, copying them within or between
 filesystems and an afio archive.
 .
 Afio archives are portable as they contain only ASCII-formatted header
 information. Afio makes cpio-format archives.  Afio deals somewhat
 gracefully with input data corruption.  Afio supports multi-volume
 archives during interactive operation.  Afio can make compressed archives
 that are much safer than compressed tar or cpio archives.
 .
 Afio is best used as an `archive engine' in a backup script.

Package: autodir
Description-md5: 0b6913d4b30fa8f1270054260e535bdb
Description-en: Automatically creates home and group directories for LDAP/NIS/SQL/local accounts
 A modular and thread-enabled tool to create and/or mounting and managing
 automagically and transparently user/group home directories, on demand.
 .
 It can work with any authentication framework (e.g. system files, NIS,
 LDAP or SQL) and does not require PAM, which is a required feature for
 session-less service such as smtp servers.
 .
 Automounter version 4 (autofs4) has to be enabled when compiling the
 kernel. Debian packaged kernels have it enabled as module.

Package: beast-mcmc
Description-md5: 347f87629165216c55313b0035e8c195
Description-en: Bayesian MCMC phylogenetic inference
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard analyses
 and a suit of programs for analysing the results.

Package: beast-mcmc-examples
Description-md5: c63bad5feea098eb39bb86db8b6f8d33
Description-en: Bayesian MCMC phylogenetic inference - example data
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard analyses
 and a suit of programs for analysing the results.
 .
 This package contains the example data.

Package: brain2mesh-demos
Description-md5: e9f024807779a12817de357606f053ea
Description-en: sample files and demo scripts for Brain2Mesh
 This package contains sample JNIfTI sample data and meshing script to
 demonstrate the basic functionalities of the Brain2Mesh Toolbox.

Package: clustalx
Description-md5: a79728f91dcfed21b62f89dea1743319
Description-en: Multiple alignment of nucleic acid and protein sequences (graphical interface)
 This package offers a GUI interface for the Clustal multiple sequence
 alignment program. It provides an integrated environment for performing
 multiple sequence- and profile-alignments to analyse the results. The
 sequence alignment is displayed in a window on the screen. A versatile
 coloring scheme has been incorporated to highlight conserved features in
 the alignment. For professional presentations, one should use the texshade
 LaTeX package or boxshade.
 .
 The pull-down menus at the top of the window allow you to select all the
 options required for traditional multiple sequence and profile alignment.
 You can cut-and-paste sequences to change the order of the alignment; you
 can select a subset of sequences to be aligned; you can select a sub-range
 of the alignment to be realigned and inserted back into the original
 alignment.
 .
 An alignment quality analysis can be performed and low-scoring segments or
 exceptional residues can be highlighted.

Package: darkice
Description-md5: 1912539adeede843fe4a648780292b75
Description-en: Live audio streamer
 DarkIce is an IceCast, IceCast2 and ShoutCast live audio streamer. It
 takes audio input from a sound card, encodes it into mp3 and/or Ogg
 Vorbis, and sends the mp3 stream to one or more IceCast and/or ShoutCast
 servers, the Ogg Vorbis stream to one or more IceCast2 servers. DarkIce
 uses lame as a shared object as its mp3 encoder, and the Ogg Vorbis as its
 Ogg Vorbis encoder.
 .
 A legacy SYSV init script is provided for existing configurations. You
 have to set RUN=yes in /etc/default/darkice to run darkice as a daemon.
 With modern systems, this is not needed as realtime scheduling is
 available to normal users.

Package: devede
Description-md5: a80b48eb4e84ed4081919926d540e84b
Description-en: simple application to create Video DVDs
 DeVeDe is a program to create video DVDs, suitable for home players, from
 any number of video files, in any of the formats supported by Mplayer.
 .
 It allows the user to create subtitles and even menus.

Package: dvd-slideshow
Description-md5: 980a2a115f819879a10ed6533ae6f66f
Description-en: set of tools to create DVD slideshows with menus
 DVD Slideshow consists in a set of tools which allows one to create slideshows-style videos from a collection of pictures. This package provides the following programs:
  * dir2slideshow: Generates a listing of the pictures in a given
    directory for easy input to dvd-slideshow.
  * dvd-slideshow: This is the main script. It generates a DVD-compatible
    MPEG2 video file with audio from a text file input listing of pictures
    and effects.
  * dvd-menu: Creates a simple DVD menu with buttons that link to MPEG2
    files generated with dvd-slideshow or ones created by the user.
  * gallery1-to-slideshow: Generates a text file listing of the pictures
    visible in a given "Gallery" (http://gallery.sourceforge.net) photo
    album in order to easily pass the information to dvd_slideshow.
  * jigl2slideshow: Does the same thing as gallery2slideshow, but works
    on a jigl gallery.


Package: f2j
Description-md5: 166f686ad8732369697da87e1906ecd3
Description-en: Fortran to Java compiler
 The package contains a Fortran to Java converter, also used to create the
 libf2j-java package. It converts Fortran file to Java source and class
 files.

Package: fasta3
Description-md5: 0c5f0c74fdf5df990b61c52bee98824e
Description-en: tools for searching collections of biological sequences
 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases, or
 by identifying local duplications within a sequence. Other programs
 provide information on the statistical significance of an alignment. Like
 BLAST, FASTA can be used to infer functional and evolutionary
 relationships between sequences as well as help identify members of gene
 families.
 .
  * Protein
    - Protein-protein FASTA
    - Protein-protein Smith-Waterman (ssearch)
    - Global Protein-protein (Needleman-Wunsch) (ggsearch)
    - Global/Local protein-protein (glsearch)
    - Protein-protein with unordered peptides (fasts)
    - Protein-protein with mixed peptide sequences (fastf)
 .
  * Nucleotide
    - Nucleotide-Nucleotide (DNA/RNA fasta)
    - Ordered Nucleotides vs Nucleotide (fastm)
    - Un-ordered Nucleotides vs Nucleotide (fasts)
 .
  * Translated
    - Translated DNA (with frameshifts, e.g. ESTs)
      vs Proteins (fastx/fasty)
    - Protein vs Translated DNA (with frameshifts)
      (tfastx/tfasty)
    - Peptides vs Translated DNA (tfasts)
 .
  * Statistical Significance
    - Protein vs Protein shuffle (prss)
    - DNA vs DNA shuffle (prss)
    - Translated DNA vs Protein shuffle (prfx)
 .
  * Local Duplications
    - Local Protein alignments (lalign)
    - Plot Protein alignment "dot-plot" (plalign)
    - Local DNA alignments (lalign)
    - Plot DNA alignment "dot-plot" (plalign)
 .
 This software is often used via a web service at the EBI with readily
 indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.

Package: fasta3-doc
Description-md5: d8363a90c1f3049dede1153f13813e53
Description-en: user guide for FASTA tools
 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases, or
 by identifying local duplications within a sequence. Other programs
 provide information on the statistical significance of an alignment. Like
 BLAST, FASTA can be used to infer functional and evolutionary
 relationships between sequences as well as help identify members of gene
 families.
 .
 The use of the package's many binaries and the equally representated
 conceptual approaches towards sequence analyses are summarised in this
 PDF.

Package: fonts-cns11643-kai
Description-md5: ba10a1118a63ddf6a3e4788e30208e6f
Description-en: Chinese TrueType font, TW-Kai
 The CNS 11643 character set (Chinese National Standard 11643), also
 officially known as the "Chinese Standard Interchange Code", is officially
 the standard character set of the Republic of China. (In practice,
 variants of Big5 are de facto standard.)
 .
 TW-Kai is released by RDEC, Executive Yuan, ROC. It covers the characters
 plane 1 to 9 defined by CNS11643.

Package: fonts-cns11643-sung
Description-md5: 0a0ab68df6c4d455c3b831f8ca434996
Description-en: Chinese TrueType font, TW-Sung
 The CNS 11643 character set (Chinese National Standard 11643), also
 officially known as the "Chinese Standard Interchange Code", is officially
 the standard character set of the Republic of China.
 .
 TW-Sung is released by RDEC, Executive Yuan, ROC. It covers the characters
 plane 1 to 9 defined by CNS11643.

Package: ifeffit
Description-md5: 910f116c8e14fa8d361b031b45896347
Description-en: Interactive XAFS analysis program
 IFEFFIT is an interactive program for XAFS analysis. It combines the high-
 quality analysis algorithms of AUTOBK and FEFFIT with graphical display of
 XAFS data and general data manipulation.
 .
 IFEFFIT comes as a command-line program, but the underlying functionality
 is available as a programming library. The IFEFFIT library can be used
 from C, Fortran, Tcl, and Perl.

Package: ifeffit-doc
Description-md5: 23588aa725d1361238e782379bbed9bc
Description-en: IFEFFIT examples and documentation
 This package contains all the available documentation for IFEFFIT and its
 component programs.  Example files for EXAFS data analysis are also
 provided as tutorials.

Package: ipadic
Description-md5: eff1ec5477c7b450aa8e1a4494f38faf
Description-en: Dictionaries for ChaSen (Binary data)
 Dictionaries for ChaSen, a morphological analysis system to segment and
 tokenize Japanese text string.  It provides many additional information
 (pronunciation, semantic information, and others).
 .
 It is based on ICOT dictionary.
 .
 This package contains architecture dependent binary data.

Package: iso2mesh-demos
Description-md5: 90b91382c05547d48c75972da0d46964
Description-en: sample files and demo scripts for Iso2Mesh toolbox
 This package contains sample meshing script and data files for testing and
 showcasing Iso2Mesh functions. The main functions demonstrated in this
 package include surface-based mesh generation via s2m/surf2mesh, volume-
 based mesh generation via v2m/vol2mesh, mesh smoothing (sms), boolean
 operations (surfboolean), downsampling (meshsample) and remeshing
 (remeshsurf).

Package: iso2mesh-tools
Description-md5: 3b89ffbe6b8b0aee8bbafebce5518870
Description-en: 3D mesh generation and repairing utilities
 This package contains 3D mesh generation and repairing tools that can be
 used independently and invoked inside iso2mesh.
 .
 These tools include cgalmesh (3D mesh generation from volumetric images),
 `cgalpoly` (3D mesh generation from polyhedral surfaces), `cgalsimp2`
 (triangular surface simplification), `meshfix` (3D surface cleaning and
 repairing), and `jmeshlib` (3D surface cleaning).

Package: jhove
Description-md5: febe0cb6a55fdf2af5baf3d3965883ac
Description-en: JSTOR/Harvard Object Validation Environment
 Perform format-specific identification, validation, and characterization
 of digital objects.

Package: jnifti-demos
Description-md5: 7445791185a3b5db029339474eb2fce6
Description-en: sample files and demo scripts for JNIfTI toolbox
 This package contains sample NIfTI-1/2 data files as well as text and
 binary JNIfTI files.

Package: kdeplasma-applets-xrdesktop
Description-md5: ca6c6146f67e07b8063852e48c753cfa
Description-en: xrdesktop applet for KDE Plasma
 This package contains xrdesktop applet for KDE Plasma.

Package: ldraw-mklist
Description-md5: 7f0b36129c83247e98ea1e2416fd0862
Description-en: LDraw mklist program
 3D CAD programs and rendering programs using the LDraw parts library of
 LEGO parts rely on a file called parts.lst containing a list of all
 available parts. The program ldraw-mklist is used to generate this list
 from a directory of LDraw parts.

Package: lgeneral
Description-md5: d3cd338c86e0144cd187ecea33e57ef8
Description-en: strategy game in the tradition of Panzer General
 LGeneral is a turn-based strategy game heavily inspired by Panzer General.
 You play single scenarios or whole campaigns turn by turn against a human
 player or the AI.
 .
 Entrenchment, rugged defense, defensive fire, surprise contacts,
 surrender, unit supply, weather influence, reinforcements and other
 implementations contribute to the tactical and strategic depth of the
 game.
 .
 This is the game engine only. LGeneral requires lgeneral-data or lgc-pg,
 which converts the game data of the original Panzer General game, to
 function properly.

Package: libf2j-java
Description-md5: 545bcec4a65e2d974a0e300c0f193fa5
Description-en: Java library port of Fortran numerical libraries
 The package provides the Java library (APIS) to numerical libraries
 originally written in Fortran (particularly BLAS and LAPACK).

Package: libforms-doc
Description-md5: 2d31b9908f0fcc2b4d5add43805bddf9
Description-en: Documentation for the XForms graphical interface library
 This package contains PDF and HTML documentation for the XForms library.

Package: libifeffit-perl
Description-md5: e6edcbfcf9214ca2748ec5d9024356e5
Description-en: Perl extensions for IFEFFIT
 IFEFFIT is an interactive program for XAFS analysis. It combines the high-
 quality analysis algorithms of AUTOBK and FEFFIT with graphical display of
 XAFS data and general data manipulation.
 .
 This package provides an interface to IFEFFIT from Perl.

Package: libjlapack-java
Description-md5: 4ea83703e8aa7420f895fb1264b3ddc9
Description-en: LAPACK numerical subroutines translated from their Fortran 77 source
 The package provides the LAPACK numerical subroutines translated from
 their subset Fortran 77 source into class files, executable by the Java
 Virtual Machine (JVM) and for use by Java programmers.
 .
 This makes it possible for Java applications or applets, distributed on
 the World Wide Web to use established legacy numerical code that was
 originally written in Fortran. The translation is accomplished using a
 special purpose Fortran-to-Java (source-to-source) compiler.

Package: libmtj-java
Description-md5: 83d51bf9bf17c051b3fb647b16f73a89
Description-en: Java library for developing numerical applications
 MTJ is designed to be used as a library for developing numerical
 applications, both for small and large scale computations. The library is
 based on BLAS and LAPACK for its dense and structured sparse computations,
 and on the Templates project for unstructured sparse operations.
 .
 MTJ uses the netlib-java project as a backend, which can be set up to use
 machine-optimised BLAS libraries for improved performance of dense matrix
 operations, falling back to a pure Java implementation. This ensures
 perfect portability, while allowing for improved performance in a
 production environment.

Package: libmtj-java-doc
Description-md5: 380f48555fc36f4067152bb8caad7db7
Description-en: Java library for developing numerical applications (documentation)
 MTJ is designed to be used as a library for developing numerical
 applications, both for small and large scale computations. The library is
 based on BLAS and LAPACK for its dense and structured sparse computations,
 and on the Templates project for unstructured sparse operations.
 .
 MTJ uses the netlib-java project as a backend, which can be set up to use
 machine-optimised BLAS libraries for improved performance of dense matrix
 operations, falling back to a pure Java implementation. This ensures
 perfect portability, while allowing for improved performance in a
 production environment.
 .
 This package contains the javadoc documentation files.

Package: libnetlib-java
Description-md5: 65016fe7e4efe90ed5b9d15484c91570
Description-en: collection of mission-critical software components for linear algebra systems
 Netlib is a collection of mission-critical software components for linear
 algebra systems (i.e. working with vectors or matrices).
 .
 Netlib libraries are written in C, Fortran or optimised assembly code.
 This package provides a Java translation but it does not take advantage of
 optimised system libraries.

Package: libnucleotidelikelihoodcore0
Description-md5: 2beeba75259cb25079c34eef520b0bde
Description-en: implementation of LikelihoodCore for nucleotides used by beast-mcmc
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard analyses
 and a suit of programs for analysing the results.
 .
 This package provides an implementation of LikelihoodCore for nucleotides
 that calls native methods for maximum speed.

Package: libopenzwave-doc
Description-md5: 1391b189d7f13f6d41b4a88932ed605b
Description-en: documentation for the openzwave library
 OpenZWave is an open-source, cross-platform library designed to enable
 anyone to add support for Z-Wave home-automation devices to their
 applications, without requiring any in depth knowledge of the Z-Wave
 protocol.
 .
 This package contains documentation.

Package: libopenzwave1.6-dev
Description-md5: eb57b245ab8d94734acd74b03f165761
Description-en: header files for the openzwave library
 OpenZWave is an open-source, cross-platform library designed to enable
 anyone to add support for Z-Wave home-automation devices to their
 applications, without requiring any in depth knowledge of the Z-Wave
 protocol.
 .
 This package contains files for developing.

Package: libopenzwave1.6t64
Description-md5: 6fd563f922d2ce455d13cf7e75020bb2
Description-en: API to use a Z-Wave controller
 OpenZWave is an open-source, cross-platform library designed to enable
 anyone to add support for Z-Wave home-automation devices to their
 applications, without requiring any in depth knowledge of the Z-Wave
 protocol.
 .
 This package contains the library.

Package: libprimus-vk1
Description-md5: 9cc616059b790cb11afff2f1a5f393d2
Description-en: vulkan layer library for the primus-vk layer
 This library implements the primus-vk layer. It decides which GPU the
 individual Vulkan API calls should go against and does the image copying.

Package: mame-extra
Description-md5: 35baa04e70a76083d21e320c835f737b
Description-en: Additional files for the Multiple Arcade Machine Emulator (MAME)
 MAME is a hardware emulator: it faithfully reproduces the behavior of many
 arcade machines (it is not a simulation). This program is not a game but
 can directly, through ROM images, run the complete system of these old
 arcade machines. These ROMs are subject to copyright and it is in most of
 the cases illegal to use them if you do not own the arcade machine.
 .
 This package provides additional data files for the MAME arcade emulator:
  nplayers.ini -- provide information about multi-player support
  history.dat -- provides a brief historical overview of each game


Package: matlab-iso2mesh
Description-md5: 70c13d5376ac1a8d098638a8deed9e4e
Description-en: 3D surface and volumetric mesh generator for MATLAB
 Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox, designed for
 easy creation of high quality surface and tetrahedral meshes from 3D
 volumetric images. It contains a rich set of mesh processing
 scripts/programs, working either independently or interacting with
 external free meshing utilities. Iso2Mesh toolbox can directly convert a
 3D image stack, including binary, segmented or gray-scale images such as
 MRI or CT scans, into quality volumetric meshes. This makes it
 particularly suitable for multi-modality medical imaging data analysis and
 multi-physics modeling. Iso2Mesh is cross-platform and is compatible with
 both MATLAB and GNU Octave.
 .
 This package contains the MATLAB support for iso2mesh.

Package: mp3diags
Description-md5: 27a41b67e8f0c1d350bd807507e1bc57
Description-en: find issues in MP3 files and help to solve them
 MP3 Diags is a GUI-based application that allows end-users to identify
 issues with their MP3 files, fix some of the issues and make other
 changes, like adding track information. It also allows user to "look
 inside" an MP3 file.
 .
 Unlike some programs that are designed to deal with a single topic (like
 fixing VBR headers or adding cover art), MP3 Diags is a one stop solution
 that identifies more than 50 different issues in MP3 files and provides
 the means to fix many of them.
 .
 Some of the more important issues that are found:
 .
  * Broken tags / headers / audio.
  * Duplicate tags / headers.
  * Incorrect placement of tags / headers (ID3V2, ID3V1, LAME, Xing, etc).
  * Low quality audio.
  * Missing VBR header.
  * Missing track info / cover art.
  * Broken track info / cover art.
  * Missing normalization data.
  * Character encoding issues (for languages other than English).
 .
 Some of the fixes and changes that MP3 Diags can do:
 .
  * Adding / fixing track info, including album cover; information can be
    retrieved from several sources: Internet, clipboard, file name, local
    files, and (obviously) keyboard.
  * Correcting files that show incorrect song duration.
  * Correcting files in which the player cannot seek correctly.
  * Converting characters for non-English names.
  * Adding composer name to the artist field, for players that don't handle
    the composer field.
  * Renaming files based on their fields.
  * Changing word case for track info.


Package: mp3fs
Description-md5: 8f548d5affaa2e87ffd6a47cb0cd77db
Description-en: FUSE filesystem for transcoding FLAC to MP3 on the fly
 MP3FS is a read-only FUSE filesystem which transcodes audio formats
 (currently FLAC) to MP3 on the fly when opened and read.
 .
 It is also a novel alternative to traditional mp3 encoder applications.
 Users can use their favorite file browser to select the files they want
 encoded and copy them somewhere.

Package: netperf
Description-md5: 7b749c9c2a7e1280fbe8ad4410601053
Description-en: Network performance benchmark
 Netperf is a benchmark that can be used to measure the performance of many different types of networking. It provides tests for both unidirecitonal throughput, and end-to-end latency. The environments currently measureable by netperf include:
  * TCP and UDP via BSD Sockets
  * DLPI
  * Unix Domain Sockets
  * IPv6


Package: notion
Description-md5: 09e7f6a1881d70d8ecd78d22041a49b7
Description-en: tiling tabbed window manager designed for keyboard users
 Notion divides the screen into tiles and places windows in these tiles by
 default.  Each tile has a set of tabs for the windows within it. It also
 allows windows to be made 'floating' and placed freely.  Notion can be
 controlled through the keyboard alone or together with a mouse.
 .
 Notion can be configured and extended using the Lua language.  It also
 supports extension modules written in C.

Package: notion-dev
Description-md5: cc63e31ab5c2f3d12f04e0160cfd72ff
Description-en: Notion development files
 Notion divides the screen into tiles and places windows in these tiles by
 default.  Each tile has a set of tabs for the windows within it. It also
 allows windows to be made 'floating' and placed freely.  Notion can be
 controlled through the keyboard alone or together with a mouse.
 .
 This package contains the files necessary for building extension modules
 to the Notion window manager

Package: nvpy
Description-md5: c44576128342ce7083deace26854b8d0
Description-en: Simplenote-syncing note-taking tool
 nvpy is a simplenote-syncing note-taking tool inspired by Notational
 Velocity (and a little bit by nvALT too) on OSX and ResophNotes on
 Windows. It is significantly uglier, but it is cross-platform.

Package: nvtop
Description-md5: 0beb511f9e4ada1ca897f74ecf2e2072
Description-en: Neat Videocard TOP
 NVTOP stands for Neat Videocard TOP, a (h)top like task monitor for AMD,
 Intel and NVIDIA GPUs. It can handle multiple GPUs and print information
 about them in a htop-familiar way.

Package: octave-brain2mesh
Description-md5: 63af1c41e2154d307ea77a403e3ba7f9
Description-en: automated brain tetrahedral mesh generation toolbox for Octave
 The Brain2Mesh toolbox provides a streamlined matlab function to convert a
 segmented brain volumes and surfaces into a high-quality multi-layered
 tetrahedral brain/full head mesh. Typical inputs include segmentation
 outputs from SPM, FreeSurfer, FSL etc. This tool does not handle the
 segmentation of MRI scans, but examples of how commonly encountered
 segmented datasets can be used to create meshes can be found in the
 package named brain2mesh-demos.

Package: octave-iso2mesh
Description-md5: ce676342413ec36338c3beea8b44f3e9
Description-en: 3D surface and volumetric mesh generator for Octave
 Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox, designed for
 easy creation of high quality surface and tetrahedral meshes from 3D
 volumetric images. It contains a rich set of mesh processing
 scripts/programs, working either independently or interacting with
 external free meshing utilities. Iso2Mesh toolbox can directly convert a
 3D image stack, including binary, segmented or gray-scale images such as
 MRI or CT scans, into quality volumetric meshes. This makes it
 particularly suitable for multi-modality medical imaging data analysis and
 multi-physics modeling. Iso2Mesh is cross-platform and is compatible with
 both MATLAB and GNU Octave.
 .
 This package contains the Octave support for iso2mesh.

Package: octave-jnifti
Description-md5: af5a7cdee58d2facd39837138556d1d6
Description-en: fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter
 This is a fully functional NIfTI-1/2 reader/writer that supports both
 MATLAB and GNU Octave, and is capable of reading/writing both non-
 compressed and compressed NIfTI files (.nii, .nii.gz) as well as two-part
 Analyze7.5/NIfTI files.
 .
 More importantly, this is a toolbox that converts NIfTI data to its JSON-
 based replacement, JNIfTI (.jnii for text-based and .bnii for binary-
 based), defined by the JNIfTI specification
 http://github.com/fangq/jnifti. JNIfTI is a much more flexible, human-
 readable and extensible file format compared to the more rigid and opaque
 NIfTI format, making the data much easier to manipulate and share.

Package: openttd-opensfx
Description-md5: 107eb65077f6c64d7c21a0c757480def
Description-en: sound set for use with the OpenTTD game
 OpenSFX is a replacement for the original TTD (Transport Tycoon Deluxe)
 base sounds used by OpenTTD, distributed under a restrictive license.  The
 main goal of OpenSFX therefore is to provide a set of sounds, available
 free of charge, which make it possible to play OpenTTD without requiring
 the user to pay for the original Transport Tycoon Deluxe game for its
 sound set.

Package: openzwave
Description-md5: 442706df5b6e40fa2ad015dc3c3b824c
Description-en: Sample Program for libopenzwave
 OpenZWave is an open-source, cross-platform library designed to enable
 anyone to add support for Z-Wave home-automation devices to their
 applications, without requiring any in depth knowledge of the Z-Wave
 protocol.

Package: p7zip-rar
Description-md5: db884766fbb0af653ae84909ccef976a
Description-en: transitional package
 This is a transitional package. It can be safely removed.

Package: primus-vk
Description-md5: f31384e21e05aff86907e8c0495ecc4f
Description-en: Vulkan layer for GPU offloading
 Typically you want to display an image rendered on a more powerful GPU on
 a display managed by an internal GPU. The layer in this package will
 direct rendering commands to a dedicated, more powerful GPU an when such
 an image is displayed it will be copied to the integrated CPU for
 displaying.
 .
 The user can activate offloading for individual applications by launching
 them with the "pvkrun" program.

Package: python3-django-anymail
Description-md5: acc7102a825f7f17ca83462b25225dd6
Description-en: Django email backend for multiple ESPs (Python 3)
 Anymail integrates several transactional email service providers (ESPs)
 into Django, with a consistent API that lets you use ESP-added features
 without locking your code to a particular ESP.
 .
 It currently fully supports Amazon SES (requires python3-boto3),
 MailerSend, Mailgun, Mailjet, Mandrill (MailChimp transactional), Postal
 (self-hosted ESP, requires python3-cryptography), Postmark, SendinBlue,
 SendGrid, and SparkPost.
 .
 Anymail normalizes ESP functionality so it "just works" with Django's
 built-in `django.core.mail` package. It includes:
 .
   * Support for HTML, attachments, extra headers, and other features of
     Django's built-in email
   * Extensions that make it easy to use extra ESP functionality, like tags,
     metadata, and tracking, with code that's portable between ESPs
   * Simplified inline images for HTML email
   * Normalized sent-message status and tracking notification, by connecting
     your ESP's webhooks to Django signals
   * "Batch transactional" sends using your ESP's merge and template features
 .
 This is the Python 3 version of the package.

Package: python3-sparkpost
Description-md5: 1337738f2301f622817dd90a4362c9a4
Description-en: SparkPost Python API client (Python 3)
 Super-mega-official Python package for using the SparkPost API.
 .
 Python and Python-Django integration with SparkPost's email transmission
 API.

Package: python3-vertica
Description-md5: e4fe2897df4016619c5c391f68a42c8a
Description-en: native Python client for the Vertica database (Python 3)
 HP Vertica is a commercial column-oriented database.
 .
 This package provides all the source, examples and documentation you need
 to easily connect to and interact with Vertica.
 .
 This is the Python 3 version of the package.

Package: qcomicbook
Description-md5: 5e1e59ae80d5250683bcf393eda201bc
Description-en: qt viewer for comic book archives (cbr/cbz/cba/cbg/cbb)
 QComicBook is a viewer for comic book archives containing jpeg/png images,
 which aims at convenience and simplicity. Features include: automatic
 decompression, full-screen mode, page scaling, mouse or keyboard
 navigation etc.
 .
 QComicBook for now supports archives:
  - cbr - rar-compressed
  - cbz - zip-compressed
  - cba - ace-compressed
  - cbg - targzipped
  - cbb - tarbzip2ped


Package: r-cran-surveillance
Description-md5: c0b0bb231313eb8bbfdc0a5bb8199755
Description-en: GNU R package for the Modeling and Monitoring of Epidemic Phenomena
 Statistical methods for the modeling and monitoring of time series of
 counts, proportions and categorical data, as well as for the modeling of
 continuous-time point processes of epidemic phenomena.
 .
 The monitoring methods focus on aberration detection in count data time
 series from public health surveillance of communicable diseases, but
 applications could just as well originate from environmetrics, reliability
 engineering, econometrics, or social sciences. The package implements many
 typical outbreak detection procedures such as the (improved) Farrington
 algorithm, or the negative binomial GLR-CUSUM method of Höhle and Paul
 (2008) <doi:10.1016/j.csda.2008.02.015>. A novel CUSUM approach combining
 logistic and multinomial logistic modeling is also included. The package
 contains several real-world data sets, the ability to simulate outbreak
 data, and to visualize the results of the monitoring in a temporal,
 spatial or spatio-temporal fashion. A recent overview of the available
 monitoring procedures is given by Salmon et al. (2016)
 <doi:10.18637/jss.v070.i10>.
 .
 For the retrospective analysis of epidemic spread, the package provides
 three endemic-epidemic modeling frameworks with tools for visualization,
 likelihood inference, and simulation. hhh4() estimates models for
 (multivariate) count time series following Paul and Held (2011)
 <doi:10.1002/sim.4177> and Meyer and Held (2014) <doi:10.1214/14-AOAS743>.
 twinSIR() models the susceptible-infectious-recovered (SIR) event history
 of a fixed population, e.g, epidemics across farms or networks, as a
 multivariate point process as proposed by Höhle (2009)
 <doi:10.1002/bimj.200900050>. twinstim() estimates self-exciting point
 process models for a spatio-temporal point pattern of infective events,
 e.g., time-stamped geo-referenced surveillance data, as proposed by Meyer
 et al. (2012) <doi:10.1111/j.1541-0420.2011.01684.x>. A recent overview of
 the implemented space-time modeling frameworks for epidemic phenomena is
 given by Meyer et al. (2017) <doi:10.18637/jss.v077.i11>.

Package: raster3d
Description-md5: 7017e40afb8a84c7aca1cff9519d06ba
Description-en: tools for generating images of proteins or other molecules
 Raster3D is a set of tools for generating high quality raster images of
 proteins or other molecules. The core program renders spheres, triangles,
 cylinders, and quadric surfaces with specular highlighting, Phong shading,
 and shadowing. It uses an efficient software Z-buffer algorithm which is
 independent of any graphics hardware. Ancillary programs process atomic
 coordinates from PDB files into rendering descriptions for pictures
 composed of ribbons, space-filling atoms, bonds, ball+stick, etc. Raster3D
 can also be used to render pictures composed in other programs such as
 Molscript in glorious 3D with highlights, shadowing, etc. Output is to
 pixel image files with 24 bits of color information per pixel.

Package: raster3d-doc
Description-md5: c1fa8477bbb4f0ad2b3ab28130533382
Description-en: documents and example files for Raster3D
 Raster3D is a set of tools for generating high quality raster images of
 proteins or other molecules. The core program renders spheres, triangles,
 cylinders, and quadric surfaces with specular highlighting, Phong shading,
 and shadowing. It uses an efficient software Z-buffer algorithm which is
 independent of any graphics hardware. Ancillary programs process atomic
 coordinates from PDB files into rendering descriptions for pictures
 composed of ribbons, space-filling atoms, bonds, ball+stick, etc. Raster3D
 can also be used to render pictures composed in other programs such as
 Molscript in glorious 3D with highlights, shadowing, etc. Output is to
 pixel image files with 24 bits of color information per pixel.
 .
 This package contains documents and example files for the raster3d
 package.

Package: ruby-pgplot
Description-md5: cf08efc3d00267462ecffbd245d9bf82
Description-en: Ruby interface to the PGPLOT graphics library
 Ruby/PGPLOT is the Ruby interface to the PGPLOT graphics library. PGPLOT
 is a FORTRAN library to draw line/scatter/histogram plot, error bar,
 contour/image/vector map, etc. Supports various output devices including
 Postscript, PNG, X-Window, etc.

Package: seaview
Description-md5: a82e7d5dbc9d5aa2cf6662e48d7aa245
Description-en: Multiplatform interface for sequence alignment and phylogeny
 SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA
 or protein sequences are positioned each in their own separate line, such
 that the nucleotide/amino acid at a particular position (column) is
 presumed to have the same biochemical property.
 .
 SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
 PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic
 trees. Alignments can be manually edited. It drives the programs Muscle or
 Clustal Omega for multiple sequence alignment, and also allows one to use
 any external alignment algorithm able to read and write FASTA-formatted
 files. It computes phylogenetic trees by parsimony using PHYLIP's
 dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a
 variety of evolutionary distances, or by maximum likelihood using the
 program PhyML 3.0.
 .
 SeaView draws phylogenetic trees on screen or PostScript files, and allows
 one to download sequences from EMBL/GenBank/UniProt using the Internet.

Package: spread-phy
Description-md5: 3adb36b53159c17b4ca86e0ba4d0f573
Description-en: analyze and visualize phylogeographic reconstructions
 SPREAD is a user-friendly application to analyze and visualize
 phylogeographic reconstructions resulting from Bayesian inference of
 spatio-temporal diffusion.
 .
 There is a tutorial for SPREAD online at http://www.kuleuven.be/aidslab/ph
 ylogeography/tutorial/spread_tutorial.html
 .
 Originally this program is named "spread".  However, there is just such a
 package inside Debian and thus a 'phy' for phylogeny was prepended.

Package: steam-devices
Description-md5: 6e1ded1865dd1db8576298bcff81247f
Description-en: Device support for Steam-related hardware
 Installing this package configures udev to allow logged-in local users to
 access various gaming-related hardware devices, such as:
 .
  - Valve devices such as the Steam Controller and Steam Deck
  - Microsoft Xbox gamepads (Xbox 360 or newer)
  - Sony Playstation gamepads (Playstation 3 or newer)
  - Nintendo Switch gamepads
  - third-party "clone" gamepads compatible with those devices
  - virtual reality and XR peripherals such as the HTC Vive
 .
 It also allows input device emulation via /dev/uinput, which is required
 by some Steam features such as Steam Input and Steam Remote Play.
 .
 These udev rules represent a trade-off between functionality and security,
 and this package should not be installed on systems that are expected to
 have malicious local users. The security risks and mitigations are
 discussed in more detail in <file:///usr/share/doc/steam-
 devices/README.Debian.gz>.

Package: svtools
Description-md5: deac8602c0e79a29c2e6d6709a026ec8
Description-en: utilities for daemontools and multilog
 This package provides some convenient utilities to handle multilog log
 files and maintain supervised services:
 .
  mlcat - output concatenated multilog files;
  mlhead - output the first part of multilog files;
  mltail - output the last part of multilog files;
  svdir - find the daemontools service directory;
  svinfo - get information about a supervised process;
  svinitd - wrap init.d commands for daemontools services;
  svinitd-create - create an init.d script for a supervised process;
  svsetup - set up a service for daemontools.


Package: tightvnc-java
Description-md5: 40a38acc917ddb191772cd544459f689
Description-en: TightVNC java applet and command line program
 VNC stands for Virtual Network Computing. It is, in essence, a remote
 display system which allows you to view a computing `desktop' environment
 not only on the machine where it is running, but from anywhere on the
 Internet and from a wide variety of machine architectures.
 .
 This is the vnc java applet file that the tightvncserver can distribute to
 the client. In addition a command line program that starts the java based
 vnc viewer locally is included.

Package: treeview
Description-md5: ba1871fdfc7832e4ff41cecdd4a32563
Description-en: Java re-implementation of Michael Eisen's TreeView
 TreeView creates a matrix-like display of expression data, known as Eisen
 clustering. The original implementation was a Windows program named
 TreeView by Michael Eisen. This TreeView package, sometimes also referred
 to as jTreeView, was rewritten in Java under a free license.
 .
 Java TreeView is an extensible viewer for microarray data in PCL or CDT
 format.

Package: ugene
Description-md5: 9a10717d68a69dfaff1354fa2282b503
Description-en: integrated bioinformatics toolkit
 Unipro UGENE is a cross-platform visual environment for DNA and protein
 sequence analysis. UGENE integrates the most important bioinformatics
 computational algorithms and provides an easy-to-use GUI for performing
 complex analysis of the genomic data. One of the main features of UGENE is
 a designer for custom bioinformatics workflows.

Package: ugene-data
Description-md5: a0c0756b3f7b317ece195fedee3dde50
Description-en: required data for UGENE - integrated bioinformatics toolkit
 Unipro UGENE is a cross-platform visual environment for DNA and protein
 sequence analysis.
 .
 This package contains various data and example files for UGENE.

Package: videotrans
Description-md5: e1f89ca2dddfd4e1fb8361b8e9ee4150
Description-en: DVD authoring utilities
 A collection of utilities and scripts designed to help with DVD authoring:
  * movie-to-dvd - convert video to MPEG2 + MP2 or AC3
  * movie-title - combine video and title sequence into a menu
  * movie-make-title - create background video for DVD menu
  * movie-make-title-simple - create background image+audio for DVD menu
  * movie-rip-tv.com - gather information about TV series from tv.com
  * movie-rip-epg.data - convert EPG to .info for movie-title
  * movie-compare-dvd - verify if DVD was burned correctly


Package: weirdx
Description-md5: efd18efb16cda856c70bd010ee0ab87c
Description-en: X server in Java
 A complete X server implementation in Java which can run standalone or as
 an applet. It supports remote X and (using libjsch-java) X forwarded over
 SSH.
 .
 Also includes a library for embedding WeirdX in other Java programs or
 Applets.

Package: xsnow
Description-md5: 50f83ae2081d9d64cb36576ded637c7a
Description-en: brings Christmas to your desktop
 Xsnow is a X Window application that will snow on the desktop background.
 Santa and his reindeer will complete your festive-season feeling. Xsnow
 runs in GNOME, KDE, FVWM and desktops that are derived from those.

