From: "Michael R. Crusoe" <crusoe@debian.org>
Date: Fri, 6 Sep 2019 14:16:07 +0900
Subject: Use the Debian package of fermi-lite
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Forwarded: not-needed

Adjust for the renamed bseq1_t→fml_seq1_t
See https://github.com/lh3/fermi-lite/issues/5
---
 Makefile | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/Makefile b/Makefile
index 9761a1f..141f5b1 100644
--- a/Makefile
+++ b/Makefile
@@ -338,7 +338,6 @@ GBWTGRAPH_DIR=deps/gbwtgraph
 KFF_DIR=deps/kff-cpp-api
 PROGRESS_BAR_DIR:=deps/progress_bar
 FASTAHACK_DIR:=deps/fastahack
-FERMI_DIR:=deps/fermi-lite
 VCFLIB_DIR:=deps/vcflib
 TABIXPP_DIR:=deps/tabixpp
 HTSLIB_DIR:=deps/htslib
@@ -386,7 +385,6 @@ LIB_DEPS += $(LIB_DIR)/libgssw.a
 LIB_DEPS += $(LIB_DIR)/libvcfh.a
 LIB_DEPS += $(LIB_DIR)/libsonlib.a
 LIB_DEPS += $(LIB_DIR)/libpinchesandcacti.a
-LIB_DEPS += $(LIB_DIR)/libfml.a
 LIB_DEPS += $(LIB_DIR)/libsublinearLS.a
 LIB_DEPS += $(LIB_DIR)/libstructures.a
 LIB_DEPS += $(LIB_DIR)/libvgio.a
@@ -712,9 +710,6 @@ $(OBJ_DIR)/sha1.o: $(SHA1_DIR)/sha1.cpp $(SHA1_DIR)/sha1.hpp
 $(SHARED_OBJ_DIR)/sha1.o: $(SHA1_DIR)/sha1.cpp $(SHA1_DIR)/sha1.hpp
 	+$(CXX) $(INCLUDE_FLAGS) $(CXXFLAGS) $(CPPFLAGS) -fPIC -c -o $@ $< $(FILTER)
 
-$(LIB_DIR)/libfml.a: $(FERMI_DIR)/*.h $(FERMI_DIR)/*.c
-	. ./source_me.sh && cd $(FERMI_DIR) && $(MAKE) $(FILTER) && cp *.h $(CWD)/$(INC_DIR)/ && cp libfml.a $(CWD)/$(LIB_DIR)/
-
 # We don't need to hack the build to point at our htslib because sublinearLS gets its htslib from the include flags we set
 $(LIB_DIR)/libsublinearLS.a: $(LINLS_DIR)/src/*.cpp $(LINLS_DIR)/src/*.hpp $(LIB_DIR)/libhts.a
 	. ./source_me.sh && cd $(LINLS_DIR) && $(MAKE) clean && INCLUDE_FLAGS="-I$(CWD)/$(INC_DIR)" $(MAKE) libs $(FILTER) && cp lib/libsublinearLS.a $(CWD)/$(LIB_DIR)/ && mkdir -p $(CWD)/$(INC_DIR)/sublinearLS && cp src/*.hpp $(CWD)/$(INC_DIR)/sublinearLS/
