#!/bin/sh -e

pkg=tophat

if [ "$ADTTMP" = "" ] ; then
  ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
fi

cd $ADTTMP

cp -a /usr/share/doc/${pkg}/test_data/* .
gunzip -r *

tophat -r 20 test_ref reads_1.fq reads_2.fq
