69a70,82
> -- ================================================
> -- TABLE: project
> -- ================================================
> 
> create table project (
>     project_id serial not null,  
>     primary key (project_id),
>     name varchar(255) not null,
>     description varchar(255) not null,
>     constraint project_c1 unique (name)
> );
> 
> COMMENT ON TABLE project IS NULL;
409,458d421
< -- ================================================
< -- TABLE: cvprop
< -- ================================================
< create table cvprop (
<     cvprop_id serial not null,
<     primary key (cvprop_id),
<     cv_id int not null,
<     foreign key (cv_id) references cv (cv_id) INITIALLY DEFERRED,
<     type_id int not null,
<     foreign key (type_id) references cvterm (cvterm_id) INITIALLY DEFERRED,
<     value text,
<     rank int not null default 0,
<     constraint cvprop_c1 unique (cv_id,type_id,rank)
< );
< 
< COMMENT ON TABLE cvprop IS 'Additional extensible properties can be attached to a cv using this table.  A notable example would be the cv version';
< 
< COMMENT ON COLUMN cvprop.type_id IS 'The name of the property or slot is a cvterm. The meaning of the property is defined in that cvterm.';
< COMMENT ON COLUMN cvprop.value IS 'The value of the property, represented as text. Numeric values are converted to their text representation.';
< 
< COMMENT ON COLUMN cvprop.rank IS 'Property-Value ordering. Any
< cv can have multiple values for any particular property type -
< these are ordered in a list using rank, counting from zero. For
< properties that are single-valued rather than multi-valued, the
< default 0 value should be used.';
< 
< -- ================================================
< -- TABLE: chadoprop
< -- ================================================
< create table chadoprop (
<     chadoprop_id serial not null,
<     primary key (chadoprop_id),
<     type_id int not null,
<     foreign key (type_id) references cvterm (cvterm_id) INITIALLY DEFERRED,
<     value text,
<     rank int not null default 0,
<     constraint chadoprop_c1 unique (type_id,rank)
< );
< 
< COMMENT ON TABLE chadoprop IS 'This table is different from other prop tables in the database, as it is for storing information about the database itself, like schema version';
< 
< COMMENT ON COLUMN chadoprop.type_id IS 'The name of the property or slot is a cvterm. The meaning of the property is defined in that cvterm.';
< COMMENT ON COLUMN chadoprop.value IS 'The value of the property, represented as text. Numeric values are converted to their text representation.';
< 
< COMMENT ON COLUMN chadoprop.rank IS 'Property-Value ordering. Any
< cv can have multiple values for any particular property type -
< these are ordered in a list using rank, counting from zero. For
< properties that are single-valued rather than multi-valued, the
< default 0 value should be used.';
< 
1927,1928c1890
<         aa              CHAR(1) NOT NULL,
<         CONSTRAINT gencode_codon_unique UNIQUE( gencode_id, codon )
---
>         aa              CHAR(1) NOT NULL
1934,1935c1896
<         codon           CHAR(3),
<         CONSTRAINT gencode_startcodon_unique UNIQUE( gencode_id, codon )
---
>         codon           CHAR(3)
2463c2424
<   WHERE cvterm.name = 'biomaterial_region' OR cvterm.name = 'experimental_feature' OR cvterm.name = 'biological_region' OR cvterm.name = 'topologically_defined_region' OR cvterm.name = 'reagent' OR cvterm.name = 'engineered_region' OR cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ASPE_primer' OR cvterm.name = 'dCAPS_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'match_part' OR cvterm.name = 'assembly_component' OR cvterm.name = 'conserved_region' OR cvterm.name = 'match' OR cvterm.name = 'remark' OR cvterm.name = 'reading_frame' OR cvterm.name = 'consensus_region' OR cvterm.name = 'low_complexity_region' OR cvterm.name = 'assembly' OR cvterm.name = 'transcribed_fragment' OR cvterm.name = 'transcribed_cluster' OR cvterm.name = 'high_identity_region' OR cvterm.name = 'mathematically_defined_repeat' OR cvterm.name = 'experimentally_defined_binding_region' OR cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'paired_end_fragment' OR cvterm.name = 'read_pair' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'YAC_end' OR cvterm.name = 'clone_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'RR_tract' OR cvterm.name = 'homologous_region' OR cvterm.name = 'centromere_DNA_Element_I' OR cvterm.name = 'centromere_DNA_Element_II' OR cvterm.name = 'centromere_DNA_Element_III' OR cvterm.name = 'X_element' OR cvterm.name = 'U_box' OR cvterm.name = 'regional_centromere_central_core' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'nucleotide_match' OR cvterm.name = 'protein_match' OR cvterm.name = 'expressed_sequence_match' OR cvterm.name = 'cross_genome_match' OR cvterm.name = 'translated_nucleotide_match' OR cvterm.name = 'primer_match' OR cvterm.name = 'EST_match' OR cvterm.name = 'cDNA_match' OR cvterm.name = 'UST_match' OR cvterm.name = 'RST_match' OR cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'assembly_error_correction' OR cvterm.name = 'base_call_error_correction' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'contig_collection' OR cvterm.name = 'ORF' OR cvterm.name = 'blocked_reading_frame' OR cvterm.name = 'mini_gene' OR cvterm.name = 'rescue_mini_gene' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'sequence_assembly' OR cvterm.name = 'fragment_assembly' OR cvterm.name = 'supercontig' OR cvterm.name = 'contig' OR cvterm.name = 'tiling_path' OR cvterm.name = 'virtual_sequence' OR cvterm.name = 'golden_path' OR cvterm.name = 'ultracontig' OR cvterm.name = 'expressed_sequence_assembly' OR cvterm.name = 'fingerprint_map' OR cvterm.name = 'STS_map' OR cvterm.name = 'RH_map' OR cvterm.name = 'unigene_cluster' OR cvterm.name = 'CHiP_seq_region' OR cvterm.name = 'sequence_secondary_structure' OR cvterm.name = 'linkage_group' OR cvterm.name = 'polypeptide' OR cvterm.name = 'deletion' OR cvterm.name = 'origin_of_replication' OR cvterm.name = 'recombination_feature' OR cvterm.name = 'CpG_island' OR cvterm.name = 'pseudogene' OR cvterm.name = 'binding_site' OR cvterm.name = 'pseudogenic_region' OR cvterm.name = 'cap' OR cvterm.name = 'intergenic_region' OR cvterm.name = 'oligo_U_tail' OR cvterm.name = 'polyA_sequence' OR cvterm.name = 'repeat_region' OR cvterm.name = 'insertion' OR cvterm.name = 'gene' OR cvterm.name = 'repeat_unit' OR cvterm.name = 'QTL' OR cvterm.name = 'chromosome_part' OR cvterm.name = 'gene_member_region' OR cvterm.name = 'transcript_region' OR cvterm.name = 'polypeptide_region' OR cvterm.name = 'gene_component_region' OR cvterm.name = 'mobile_genetic_element' OR cvterm.name = 'replicon' OR cvterm.name = 'base' OR cvterm.name = 'amino_acid' OR cvterm.name = 'genetic_marker' OR cvterm.name = 'sequence_motif' OR cvterm.name = 'restriction_enzyme_recognition_site' OR cvterm.name = 'restriction_enzyme_single_strand_overhang' OR cvterm.name = 'epigenetically_modified_region' OR cvterm.name = 'open_chromatin_region' OR cvterm.name = 'gene_group' OR cvterm.name = 'substitution' OR cvterm.name = 'inversion' OR cvterm.name = 'retron' OR cvterm.name = 'G_quartet' OR cvterm.name = 'base_pair' OR cvterm.name = 'RNA_sequence_secondary_structure' OR cvterm.name = 'DNA_sequence_secondary_structure' OR cvterm.name = 'pseudoknot' OR cvterm.name = 'WC_base_pair' OR cvterm.name = 'sugar_edge_base_pair' OR cvterm.name = 'Hoogsteen_base_pair' OR cvterm.name = 'reverse_Hoogsteen_base_pair' OR cvterm.name = 'wobble_base_pair' OR cvterm.name = 'stem_loop' OR cvterm.name = 'tetraloop' OR cvterm.name = 'i_motif' OR cvterm.name = 'recoding_pseudoknot' OR cvterm.name = 'H_pseudoknot' OR cvterm.name = 'D_loop' OR cvterm.name = 'ARS' OR cvterm.name = 'oriT' OR cvterm.name = 'amplification_origin' OR cvterm.name = 'oriV' OR cvterm.name = 'oriC' OR cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'recombination_signal_sequence' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'processed_pseudogene' OR cvterm.name = 'non_processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'duplicated_pseudogene' OR cvterm.name = 'unitary_pseudogene' OR cvterm.name = 'protein_binding_site' OR cvterm.name = 'epitope' OR cvterm.name = 'nucleotide_binding_site' OR cvterm.name = 'metal_binding_site' OR cvterm.name = 'ligand_binding_site' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'nucleotide_to_protein_binding_site' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'X_element_combinatorial_repeat' OR cvterm.name = 'Y_prime_element' OR cvterm.name = 'telomeric_repeat' OR cvterm.name = 'nested_repeat' OR cvterm.name = 'centromeric_repeat' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'nested_tandem_repeat' OR cvterm.name = 'regional_centromere_inner_repeat_region' OR cvterm.name = 'regional_centromere_outer_repeat_region' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'duplication' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_with_non_canonical_start_codon' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'rRNA_gene' OR cvterm.name = 'piRNA_gene' OR cvterm.name = 'RNase_P_RNA_gene' OR cvterm.name = 'RNase_MRP_RNA_gene' OR cvterm.name = 'lincRNA_gene' OR cvterm.name = 'telomerase_RNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'gene_with_start_codon_CUG' OR cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'point_centromere' OR cvterm.name = 'regional_centromere' OR cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'processed_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'tasiRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'tasiRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'transcription_regulatory_region' OR cvterm.name = 'translation_regulatory_region' OR cvterm.name = 'recombination_regulatory_region' OR cvterm.name = 'replication_regulatory_region' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'intronic_regulatory_region' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'ISRE' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'attenuator' OR cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'kozak_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'codon' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'cryptic_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding_exon_coding_region' OR cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'peptide_localization_signal' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'nuclear_localization_signal' OR cvterm.name = 'endosomal_localization_signal' OR cvterm.name = 'lysosomal_localization_signal' OR cvterm.name = 'nuclear_export_signal' OR cvterm.name = 'nuclear_rim_localization_signal' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'pseudogenic_gene_segment' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'nested_transposon' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'p_element' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'arginine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'heritable_phenotypic_marker' OR cvterm.name = 'DArT_marker' OR cvterm.name = 'nucleotide_motif' OR cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'retinoic_acid_responsive_element' OR cvterm.name = 'promoter_element' OR cvterm.name = 'DCE_SI' OR cvterm.name = 'DCE_SII' OR cvterm.name = 'DCE_SIII' OR cvterm.name = 'minus_12_signal' OR cvterm.name = 'minus_24_signal' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'core_promoter_element' OR cvterm.name = 'regulatory_promoter_element' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'blunt_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'sticky_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'modified_base' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'histone_modification' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'operon' OR cvterm.name = 'mating_type_region' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'SNV' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'point_mutation' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'flanking_region' OR cvterm.name = 'repeat_component' OR cvterm.name = 'transposable_element_flanking_region' OR cvterm.name = 'five_prime_flanking_region' OR cvterm.name = 'three_prime_flanking_region' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'region';
---
>   WHERE cvterm.name = 'biomaterial_region' OR cvterm.name = 'experimental_feature' OR cvterm.name = 'biological_region' OR cvterm.name = 'topologically_defined_region' OR cvterm.name = 'reagent' OR cvterm.name = 'engineered_region' OR cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'match_part' OR cvterm.name = 'assembly_component' OR cvterm.name = 'conserved_region' OR cvterm.name = 'match' OR cvterm.name = 'remark' OR cvterm.name = 'reading_frame' OR cvterm.name = 'QTL' OR cvterm.name = 'consensus_region' OR cvterm.name = 'low_complexity_region' OR cvterm.name = 'assembly' OR cvterm.name = 'transcribed_fragment' OR cvterm.name = 'transcribed_cluster' OR cvterm.name = 'read_pair' OR cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'homologous_region' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'nucleotide_match' OR cvterm.name = 'protein_match' OR cvterm.name = 'expressed_sequence_match' OR cvterm.name = 'cross_genome_match' OR cvterm.name = 'translated_nucleotide_match' OR cvterm.name = 'primer_match' OR cvterm.name = 'EST_match' OR cvterm.name = 'cDNA_match' OR cvterm.name = 'UST_match' OR cvterm.name = 'RST_match' OR cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'ORF' OR cvterm.name = 'blocked_reading_frame' OR cvterm.name = 'mini_gene' OR cvterm.name = 'rescue_mini_gene' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'sequence_assembly' OR cvterm.name = 'fragment_assembly' OR cvterm.name = 'supercontig' OR cvterm.name = 'contig' OR cvterm.name = 'tiling_path' OR cvterm.name = 'virtual_sequence' OR cvterm.name = 'golden_path' OR cvterm.name = 'ultracontig' OR cvterm.name = 'expressed_sequence_assembly' OR cvterm.name = 'fingerprint_map' OR cvterm.name = 'STS_map' OR cvterm.name = 'RH_map' OR cvterm.name = 'unigene_cluster' OR cvterm.name = 'sequence_secondary_structure' OR cvterm.name = 'linkage_group' OR cvterm.name = 'polypeptide' OR cvterm.name = 'deletion' OR cvterm.name = 'origin_of_replication' OR cvterm.name = 'recombination_feature' OR cvterm.name = 'CpG_island' OR cvterm.name = 'binding_site' OR cvterm.name = 'pseudogenic_region' OR cvterm.name = 'cap' OR cvterm.name = 'intergenic_region' OR cvterm.name = 'oligo_U_tail' OR cvterm.name = 'polyA_sequence' OR cvterm.name = 'insertion' OR cvterm.name = 'gene' OR cvterm.name = 'nucleotide_motif' OR cvterm.name = 'chromosome_part' OR cvterm.name = 'gene_member_region' OR cvterm.name = 'transcript_region' OR cvterm.name = 'polypeptide_region' OR cvterm.name = 'gene_component_region' OR cvterm.name = 'mobile_genetic_element' OR cvterm.name = 'replicon' OR cvterm.name = 'base' OR cvterm.name = 'amino_acid' OR cvterm.name = 'gene_group' OR cvterm.name = 'substitution' OR cvterm.name = 'inversion' OR cvterm.name = 'retron' OR cvterm.name = 'G_quartet' OR cvterm.name = 'base_pair' OR cvterm.name = 'RNA_sequence_secondary_structure' OR cvterm.name = 'DNA_sequence_secondary_structure' OR cvterm.name = 'pseudoknot' OR cvterm.name = 'WC_base_pair' OR cvterm.name = 'sugar_edge_base_pair' OR cvterm.name = 'Hoogsteen_base_pair' OR cvterm.name = 'reverse_Hoogsteen_base_pair' OR cvterm.name = 'wobble_base_pair' OR cvterm.name = 'stem_loop' OR cvterm.name = 'tetraloop' OR cvterm.name = 'i_motif' OR cvterm.name = 'recoding_pseudoknot' OR cvterm.name = 'H_pseudoknot' OR cvterm.name = 'D_loop' OR cvterm.name = 'ARS' OR cvterm.name = 'oriT' OR cvterm.name = 'amplification_origin' OR cvterm.name = 'oriV' OR cvterm.name = 'oriC' OR cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'protein_binding_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'epitope' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'pseudogene' OR cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'attenuator' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'codon' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding exon_coding_region' OR cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'RR_tract' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'modified_base_site' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'argenine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'operon' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'point_mutation' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'flanking_region' OR cvterm.name = 'repeat_region' OR cvterm.name = 'repeat_unit' OR cvterm.name = 'repeat_component' OR cvterm.name = 'transposable_element_flanking_region' OR cvterm.name = 'five_prime_flanking_region' OR cvterm.name = 'three_prime_flanking_region' OR cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'region';
2557,2560c2518,2521
< --- *** One of a pair of sequencing reads in whi ***
< --- *** ch the two members of the pair are relat ***
< --- *** ed by originating at either end of a clo ***
< --- *** ne insert.                               ***
---
> --- *** A pair of sequencing reads in which the  ***
> --- *** two members of the pair are related by o ***
> --- *** riginating at either end of a clone inse ***
> --- *** rt.                                      ***
2625,2626c2586,2588
< --- *** A small non coding RNA sequence, present ***
< --- ***  in the cytoplasm.                       ***
---
> --- *** Any one of several small cytoplasmic RNA ***
> --- ***  molecules present in the cytoplasm and  ***
> --- *** sometimes nucleus of a eukaryote.        ***
2689c2651
< --- *** relation: breu_motif ***
---
> --- *** relation: bre_motif ***
2701c2663
< CREATE VIEW breu_motif AS
---
> CREATE VIEW bre_motif AS
2703c2665
<     feature_id AS breu_motif_id,
---
>     feature_id AS bre_motif_id,
2707c2669
<   WHERE cvterm.name = 'BREu_motif';
---
>   WHERE cvterm.name = 'BRE_motif';
3119c3081
< --- *** s and promoters, but often including a p ***
---
> --- *** s and promotors, but often including a p ***
3167a3130,3146
> --- *** relation: sequence_variant_affecting_regulatory_region ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** A sequence_variant_effect which changes  ***
> --- *** the regulatory region of a gene.         ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_affecting_regulatory_region AS
>   SELECT
>     feature_id AS sequence_variant_affecting_regulatory_region_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_affecting_regulatory_region';
> 
> --- ************************************************
3246,3249c3225,3226
< --- *** A binding site that, of a nucleotide mol ***
< --- *** ecule, that interacts selectively and no ***
< --- *** n-covalently with polypeptide residues o ***
< --- *** f a nuclease.                            ***
---
> --- *** A region of a molecule that binds to a n ***
> --- *** uclease.                                 ***
3280,3283c3257,3258
< --- *** A binding site that, in the nucleotide m ***
< --- *** olecule, interacts selectively and non-c ***
< --- *** ovalently with polypeptide residues of a ***
< --- ***  restriction enzyme.                     ***
---
> --- *** A region of a molecule that binds to a r ***
> --- *** estriction enzyme.                       ***
3299,3302d3273
< --- *** An intrachromosomal transposition whereb ***
< --- *** y a translocation in which one of the fo ***
< --- *** ur broken ends loses a segment before re ***
< --- *** -joining.                                ***
3318,3321d3288
< --- *** An interchromosomal transposition whereb ***
< --- *** y a translocation in which one of the fo ***
< --- *** ur broken ends loses a segment before re ***
< --- *** -joining.                                ***
3337,3339d3303
< --- *** A chromosome structure variation whereby ***
< --- ***  an arm exists as an individual chromoso ***
< --- *** me element.                              ***
3861c3825
<   WHERE cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'nested_transposon' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'p_element' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'transposable_element';
---
>   WHERE cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'RR_tract' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'transposable_element';
3979c3943
<   WHERE cvterm.name = 'region' OR cvterm.name = 'junction' OR cvterm.name = 'sequence_alteration' OR cvterm.name = 'biomaterial_region' OR cvterm.name = 'experimental_feature' OR cvterm.name = 'biological_region' OR cvterm.name = 'topologically_defined_region' OR cvterm.name = 'reagent' OR cvterm.name = 'engineered_region' OR cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ASPE_primer' OR cvterm.name = 'dCAPS_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'match_part' OR cvterm.name = 'assembly_component' OR cvterm.name = 'conserved_region' OR cvterm.name = 'match' OR cvterm.name = 'remark' OR cvterm.name = 'reading_frame' OR cvterm.name = 'consensus_region' OR cvterm.name = 'low_complexity_region' OR cvterm.name = 'assembly' OR cvterm.name = 'transcribed_fragment' OR cvterm.name = 'transcribed_cluster' OR cvterm.name = 'high_identity_region' OR cvterm.name = 'mathematically_defined_repeat' OR cvterm.name = 'experimentally_defined_binding_region' OR cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'paired_end_fragment' OR cvterm.name = 'read_pair' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'YAC_end' OR cvterm.name = 'clone_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'RR_tract' OR cvterm.name = 'homologous_region' OR cvterm.name = 'centromere_DNA_Element_I' OR cvterm.name = 'centromere_DNA_Element_II' OR cvterm.name = 'centromere_DNA_Element_III' OR cvterm.name = 'X_element' OR cvterm.name = 'U_box' OR cvterm.name = 'regional_centromere_central_core' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'nucleotide_match' OR cvterm.name = 'protein_match' OR cvterm.name = 'expressed_sequence_match' OR cvterm.name = 'cross_genome_match' OR cvterm.name = 'translated_nucleotide_match' OR cvterm.name = 'primer_match' OR cvterm.name = 'EST_match' OR cvterm.name = 'cDNA_match' OR cvterm.name = 'UST_match' OR cvterm.name = 'RST_match' OR cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'assembly_error_correction' OR cvterm.name = 'base_call_error_correction' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'contig_collection' OR cvterm.name = 'ORF' OR cvterm.name = 'blocked_reading_frame' OR cvterm.name = 'mini_gene' OR cvterm.name = 'rescue_mini_gene' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'sequence_assembly' OR cvterm.name = 'fragment_assembly' OR cvterm.name = 'supercontig' OR cvterm.name = 'contig' OR cvterm.name = 'tiling_path' OR cvterm.name = 'virtual_sequence' OR cvterm.name = 'golden_path' OR cvterm.name = 'ultracontig' OR cvterm.name = 'expressed_sequence_assembly' OR cvterm.name = 'fingerprint_map' OR cvterm.name = 'STS_map' OR cvterm.name = 'RH_map' OR cvterm.name = 'unigene_cluster' OR cvterm.name = 'CHiP_seq_region' OR cvterm.name = 'sequence_secondary_structure' OR cvterm.name = 'linkage_group' OR cvterm.name = 'polypeptide' OR cvterm.name = 'deletion' OR cvterm.name = 'origin_of_replication' OR cvterm.name = 'recombination_feature' OR cvterm.name = 'CpG_island' OR cvterm.name = 'pseudogene' OR cvterm.name = 'binding_site' OR cvterm.name = 'pseudogenic_region' OR cvterm.name = 'cap' OR cvterm.name = 'intergenic_region' OR cvterm.name = 'oligo_U_tail' OR cvterm.name = 'polyA_sequence' OR cvterm.name = 'repeat_region' OR cvterm.name = 'insertion' OR cvterm.name = 'gene' OR cvterm.name = 'repeat_unit' OR cvterm.name = 'QTL' OR cvterm.name = 'chromosome_part' OR cvterm.name = 'gene_member_region' OR cvterm.name = 'transcript_region' OR cvterm.name = 'polypeptide_region' OR cvterm.name = 'gene_component_region' OR cvterm.name = 'mobile_genetic_element' OR cvterm.name = 'replicon' OR cvterm.name = 'base' OR cvterm.name = 'amino_acid' OR cvterm.name = 'genetic_marker' OR cvterm.name = 'sequence_motif' OR cvterm.name = 'restriction_enzyme_recognition_site' OR cvterm.name = 'restriction_enzyme_single_strand_overhang' OR cvterm.name = 'epigenetically_modified_region' OR cvterm.name = 'open_chromatin_region' OR cvterm.name = 'gene_group' OR cvterm.name = 'substitution' OR cvterm.name = 'inversion' OR cvterm.name = 'retron' OR cvterm.name = 'G_quartet' OR cvterm.name = 'base_pair' OR cvterm.name = 'RNA_sequence_secondary_structure' OR cvterm.name = 'DNA_sequence_secondary_structure' OR cvterm.name = 'pseudoknot' OR cvterm.name = 'WC_base_pair' OR cvterm.name = 'sugar_edge_base_pair' OR cvterm.name = 'Hoogsteen_base_pair' OR cvterm.name = 'reverse_Hoogsteen_base_pair' OR cvterm.name = 'wobble_base_pair' OR cvterm.name = 'stem_loop' OR cvterm.name = 'tetraloop' OR cvterm.name = 'i_motif' OR cvterm.name = 'recoding_pseudoknot' OR cvterm.name = 'H_pseudoknot' OR cvterm.name = 'D_loop' OR cvterm.name = 'ARS' OR cvterm.name = 'oriT' OR cvterm.name = 'amplification_origin' OR cvterm.name = 'oriV' OR cvterm.name = 'oriC' OR cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'recombination_signal_sequence' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'processed_pseudogene' OR cvterm.name = 'non_processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'duplicated_pseudogene' OR cvterm.name = 'unitary_pseudogene' OR cvterm.name = 'protein_binding_site' OR cvterm.name = 'epitope' OR cvterm.name = 'nucleotide_binding_site' OR cvterm.name = 'metal_binding_site' OR cvterm.name = 'ligand_binding_site' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'nucleotide_to_protein_binding_site' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'X_element_combinatorial_repeat' OR cvterm.name = 'Y_prime_element' OR cvterm.name = 'telomeric_repeat' OR cvterm.name = 'nested_repeat' OR cvterm.name = 'centromeric_repeat' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'nested_tandem_repeat' OR cvterm.name = 'regional_centromere_inner_repeat_region' OR cvterm.name = 'regional_centromere_outer_repeat_region' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'duplication' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_with_non_canonical_start_codon' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'rRNA_gene' OR cvterm.name = 'piRNA_gene' OR cvterm.name = 'RNase_P_RNA_gene' OR cvterm.name = 'RNase_MRP_RNA_gene' OR cvterm.name = 'lincRNA_gene' OR cvterm.name = 'telomerase_RNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'gene_with_start_codon_CUG' OR cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'point_centromere' OR cvterm.name = 'regional_centromere' OR cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'processed_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'tasiRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'tasiRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'transcription_regulatory_region' OR cvterm.name = 'translation_regulatory_region' OR cvterm.name = 'recombination_regulatory_region' OR cvterm.name = 'replication_regulatory_region' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'intronic_regulatory_region' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'ISRE' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'attenuator' OR cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'kozak_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'codon' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'cryptic_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding_exon_coding_region' OR cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'peptide_localization_signal' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'nuclear_localization_signal' OR cvterm.name = 'endosomal_localization_signal' OR cvterm.name = 'lysosomal_localization_signal' OR cvterm.name = 'nuclear_export_signal' OR cvterm.name = 'nuclear_rim_localization_signal' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'pseudogenic_gene_segment' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'nested_transposon' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'p_element' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'arginine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'heritable_phenotypic_marker' OR cvterm.name = 'DArT_marker' OR cvterm.name = 'nucleotide_motif' OR cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'retinoic_acid_responsive_element' OR cvterm.name = 'promoter_element' OR cvterm.name = 'DCE_SI' OR cvterm.name = 'DCE_SII' OR cvterm.name = 'DCE_SIII' OR cvterm.name = 'minus_12_signal' OR cvterm.name = 'minus_24_signal' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'core_promoter_element' OR cvterm.name = 'regulatory_promoter_element' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'blunt_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'sticky_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'modified_base' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'histone_modification' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'operon' OR cvterm.name = 'mating_type_region' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'SNV' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'point_mutation' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'flanking_region' OR cvterm.name = 'repeat_component' OR cvterm.name = 'transposable_element_flanking_region' OR cvterm.name = 'five_prime_flanking_region' OR cvterm.name = 'three_prime_flanking_region' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'clone_insert_end' OR cvterm.name = 'clone_insert_start' OR cvterm.name = 'exon_junction' OR cvterm.name = 'insertion_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'deletion_junction' OR cvterm.name = 'chromosome_breakpoint' OR cvterm.name = 'splice_junction' OR cvterm.name = 'trans_splice_junction' OR cvterm.name = 'restriction_enzyme_cleavage_junction' OR cvterm.name = 'transposable_element_insertion_site' OR cvterm.name = 'inversion_breakpoint' OR cvterm.name = 'translocation_breakpoint' OR cvterm.name = 'insertion_breakpoint' OR cvterm.name = 'deletion_breakpoint' OR cvterm.name = 'blunt_end_restriction_enzyme_cleavage_junction' OR cvterm.name = 'single_strand_restriction_enzyme_cleavage_site' OR cvterm.name = 'five_prime_restriction_enzyme_junction' OR cvterm.name = 'three_prime_restriction_enzyme_junction' OR cvterm.name = 'deletion' OR cvterm.name = 'translocation' OR cvterm.name = 'insertion' OR cvterm.name = 'copy_number_variation' OR cvterm.name = 'UPD' OR cvterm.name = 'structural_alteration' OR cvterm.name = 'substitution' OR cvterm.name = 'indel' OR cvterm.name = 'inversion' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'duplication' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'copy_number_gain' OR cvterm.name = 'copy_number_loss' OR cvterm.name = 'maternal_uniparental_disomy' OR cvterm.name = 'paternal_uniparental_disomy' OR cvterm.name = 'complex_structural_alteration' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'SNV' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'point_mutation' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'sequence_feature';
---
>   WHERE cvterm.name = 'region' OR cvterm.name = 'junction' OR cvterm.name = 'sequence_alteration' OR cvterm.name = 'biomaterial_region' OR cvterm.name = 'experimental_feature' OR cvterm.name = 'biological_region' OR cvterm.name = 'topologically_defined_region' OR cvterm.name = 'reagent' OR cvterm.name = 'engineered_region' OR cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'match_part' OR cvterm.name = 'assembly_component' OR cvterm.name = 'conserved_region' OR cvterm.name = 'match' OR cvterm.name = 'remark' OR cvterm.name = 'reading_frame' OR cvterm.name = 'QTL' OR cvterm.name = 'consensus_region' OR cvterm.name = 'low_complexity_region' OR cvterm.name = 'assembly' OR cvterm.name = 'transcribed_fragment' OR cvterm.name = 'transcribed_cluster' OR cvterm.name = 'read_pair' OR cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'homologous_region' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'nucleotide_match' OR cvterm.name = 'protein_match' OR cvterm.name = 'expressed_sequence_match' OR cvterm.name = 'cross_genome_match' OR cvterm.name = 'translated_nucleotide_match' OR cvterm.name = 'primer_match' OR cvterm.name = 'EST_match' OR cvterm.name = 'cDNA_match' OR cvterm.name = 'UST_match' OR cvterm.name = 'RST_match' OR cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'ORF' OR cvterm.name = 'blocked_reading_frame' OR cvterm.name = 'mini_gene' OR cvterm.name = 'rescue_mini_gene' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'sequence_assembly' OR cvterm.name = 'fragment_assembly' OR cvterm.name = 'supercontig' OR cvterm.name = 'contig' OR cvterm.name = 'tiling_path' OR cvterm.name = 'virtual_sequence' OR cvterm.name = 'golden_path' OR cvterm.name = 'ultracontig' OR cvterm.name = 'expressed_sequence_assembly' OR cvterm.name = 'fingerprint_map' OR cvterm.name = 'STS_map' OR cvterm.name = 'RH_map' OR cvterm.name = 'unigene_cluster' OR cvterm.name = 'sequence_secondary_structure' OR cvterm.name = 'linkage_group' OR cvterm.name = 'polypeptide' OR cvterm.name = 'deletion' OR cvterm.name = 'origin_of_replication' OR cvterm.name = 'recombination_feature' OR cvterm.name = 'CpG_island' OR cvterm.name = 'binding_site' OR cvterm.name = 'pseudogenic_region' OR cvterm.name = 'cap' OR cvterm.name = 'intergenic_region' OR cvterm.name = 'oligo_U_tail' OR cvterm.name = 'polyA_sequence' OR cvterm.name = 'insertion' OR cvterm.name = 'gene' OR cvterm.name = 'nucleotide_motif' OR cvterm.name = 'chromosome_part' OR cvterm.name = 'gene_member_region' OR cvterm.name = 'transcript_region' OR cvterm.name = 'polypeptide_region' OR cvterm.name = 'gene_component_region' OR cvterm.name = 'mobile_genetic_element' OR cvterm.name = 'replicon' OR cvterm.name = 'base' OR cvterm.name = 'amino_acid' OR cvterm.name = 'gene_group' OR cvterm.name = 'substitution' OR cvterm.name = 'inversion' OR cvterm.name = 'retron' OR cvterm.name = 'G_quartet' OR cvterm.name = 'base_pair' OR cvterm.name = 'RNA_sequence_secondary_structure' OR cvterm.name = 'DNA_sequence_secondary_structure' OR cvterm.name = 'pseudoknot' OR cvterm.name = 'WC_base_pair' OR cvterm.name = 'sugar_edge_base_pair' OR cvterm.name = 'Hoogsteen_base_pair' OR cvterm.name = 'reverse_Hoogsteen_base_pair' OR cvterm.name = 'wobble_base_pair' OR cvterm.name = 'stem_loop' OR cvterm.name = 'tetraloop' OR cvterm.name = 'i_motif' OR cvterm.name = 'recoding_pseudoknot' OR cvterm.name = 'H_pseudoknot' OR cvterm.name = 'D_loop' OR cvterm.name = 'ARS' OR cvterm.name = 'oriT' OR cvterm.name = 'amplification_origin' OR cvterm.name = 'oriV' OR cvterm.name = 'oriC' OR cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'protein_binding_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'epitope' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'pseudogene' OR cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'attenuator' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'codon' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding exon_coding_region' OR cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'RR_tract' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'modified_base_site' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'argenine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'operon' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'point_mutation' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'flanking_region' OR cvterm.name = 'repeat_region' OR cvterm.name = 'repeat_unit' OR cvterm.name = 'repeat_component' OR cvterm.name = 'transposable_element_flanking_region' OR cvterm.name = 'five_prime_flanking_region' OR cvterm.name = 'three_prime_flanking_region' OR cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'clone_insert_end' OR cvterm.name = 'clone_insert_start' OR cvterm.name = 'exon_junction' OR cvterm.name = 'insertion_site' OR cvterm.name = 'deletion_junction' OR cvterm.name = 'chromosome_breakpoint' OR cvterm.name = 'splice_junction' OR cvterm.name = 'polyA_junction' OR cvterm.name = 'trans_splice_junction' OR cvterm.name = 'transposable_element_insertion_site' OR cvterm.name = 'inversion_breakpoint' OR cvterm.name = 'translocation_breakpoint' OR cvterm.name = 'insertion_breakpoint' OR cvterm.name = 'deletion_breakpoint' OR cvterm.name = 'deletion' OR cvterm.name = 'translocation' OR cvterm.name = 'insertion' OR cvterm.name = 'substitution' OR cvterm.name = 'uncharacterised_change_in_nucleotide_sequence' OR cvterm.name = 'indel' OR cvterm.name = 'inversion' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'point_mutation' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'partially_characterised_change_in_DNA_sequence' OR cvterm.name = 'nucleotide_deletion' OR cvterm.name = 'nucleotide_insertion' OR cvterm.name = 'nucleotide_duplication' OR cvterm.name = 'sequence_feature';
4004,4005c3968,3970
< --- *** An oligo to which new deoxyribonucleotid ***
< --- *** es can be added by DNA polymerase.       ***
---
> --- *** A short preexisting polynucleotide chain ***
> --- ***  to which new deoxyribonucleotides can b ***
> --- *** e added by DNA polymerase.               ***
4015c3980
<   WHERE cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ASPE_primer' OR cvterm.name = 'dCAPS_primer' OR cvterm.name = 'primer';
---
>   WHERE cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'primer';
4403,4406c4368,4371
< --- *** Allelic exclusion is a process occurring ***
< --- ***  in diploid organisms, where a gene is i ***
< --- *** nactivated and not expressed in that cel ***
< --- *** l.                                       ***
---
> --- *** Allelic exclusion is a process occuring  ***
> --- *** in diploid organisms, where a gene is in ***
> --- *** activated and not expressed in that cell ***
> --- *** .                                        ***
4449c4414
<   WHERE cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'kozak_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'ribosome_entry_site';
---
>   WHERE cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'ribosome_entry_site';
4518c4483
<   WHERE cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'paired_end_fragment' OR cvterm.name = 'read_pair' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'YAC_end' OR cvterm.name = 'clone_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'assembly_component';
---
>   WHERE cvterm.name = 'read_pair' OR cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'assembly_component';
4602c4567
< --- *** in N's from unavailable bases.           ***
---
> --- *** in N's from unvailable bases.            ***
4633c4598
<   WHERE cvterm.name = 'read_pair' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'YAC_end' OR cvterm.name = 'clone_end' OR cvterm.name = 'read';
---
>   WHERE cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'read';
4732c4697
<   WHERE cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'plasmid';
---
>   WHERE cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'plasmid';
4779c4744
< --- *** A cloning vector that utilizes the E. co ***
---
> --- *** A cloning vector that utilises the E. co ***
4796,4797c4761
< --- *** The point at which one or more contiguou ***
< --- *** s nucleotides were excised.              ***
---
> --- *** The point at which a deletion occured.   ***
4843c4807
<   WHERE cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'cryptic_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'splice_site';
---
>   WHERE cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'splice_site';
4935c4899
<   WHERE cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'promoter';
---
>   WHERE cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'promoter';
4971c4935
<   WHERE cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_II_promoter';
---
>   WHERE cvterm.name = 'RNApol_II_promoter';
5050c5014
<   WHERE cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'TATA_box';
---
>   WHERE cvterm.name = 'TATA_box';
5059,5061c5023
< --- *** ding RNA polymerase; consensus=TAtAaT. T ***
< --- *** his region is associated with sigma fact ***
< --- *** or 70.                                   ***
---
> --- *** ding RNA polymerase; consensus=TAtAaT.   ***
5080,5081c5042
< --- *** CA. This region is associated with sigma ***
< --- ***  factor 70.                              ***
---
> --- *** CA.                                      ***
5160c5121
<   WHERE cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'retrotransposon';
---
>   WHERE cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'RR_tract' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'retrotransposon';
5193c5154
<   WHERE cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'p_element' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'DNA_transposon';
---
>   WHERE cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'DNA_transposon';
5245c5206
<   WHERE cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'tasiRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'primary_transcript';
---
>   WHERE cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'primary_transcript';
5262c5223
<   WHERE cvterm.name = 'LTR_retrotransposon';
---
>   WHERE cvterm.name = 'RR_tract' OR cvterm.name = 'LTR_retrotransposon';
5268,5271c5229,5232
< --- *** A region of a primary transcript that is ***
< --- ***  transcribed, but removed from within th ***
< --- *** e transcript by splicing together the se ***
< --- *** quences (exons) on either side of it.    ***
---
> --- *** A segment of DNA that is transcribed, bu ***
> --- *** t removed from within the transcript by  ***
> --- *** splicing together the sequences (exons)  ***
> --- *** on either side of it.                    ***
5390c5351
< --- *** t of a codon (here, 'codon' is inclusive ***
---
> --- *** t of a codon (here, 'codon'nis inclusive ***
5435c5396
<   WHERE cvterm.name = 'three_prime_coding_exon_coding_region';
---
>   WHERE cvterm.name = 'three_prime_coding exon_coding_region';
6057c6018
<   WHERE cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'tasiRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'mature_transcript';
---
>   WHERE cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'mature_transcript';
6076c6037
<   WHERE cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'mRNA';
---
>   WHERE cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'mRNA';
6082,6084c6043,6044
< --- *** A region of a nucleotide molecule that b ***
< --- *** inds a Transcription Factor or Transcrip ***
< --- *** tion Factor complex [GO:0005667].        ***
---
> --- *** A region of a molecule that binds a TF c ***
> --- *** omplex [GO:0005667].                     ***
6094c6054
<   WHERE cvterm.name = 'TF_binding_site';
---
>   WHERE cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'TF_binding_site';
6100,6104c6060,6064
< --- *** The in-frame interval between the stop c ***
< --- *** odons of a reading frame which when read ***
< --- ***  as sequential triplets, has the potenti ***
< --- *** al of encoding a sequential string of am ***
< --- *** ino acids. TER(NNN)nTER.                 ***
---
> --- *** The inframe interval between the stop co ***
> --- *** dons of a reading frame which when read  ***
> --- *** as sequential triplets, has the potentia ***
> --- *** l of encoding a sequential string of ami ***
> --- *** no acids. TER(NNN)nTER.                  ***
6136c6096
< --- *** condary structure, characterized by larg ***
---
> --- *** condary structure, characterised by larg ***
6180c6140
<   WHERE cvterm.name = 'assortment_derived_variation' OR cvterm.name = 'chromosome_number_variation' OR cvterm.name = 'chromosome_structure_variation' OR cvterm.name = 'assortment_derived_duplication' OR cvterm.name = 'assortment_derived_deficiency_plus_duplication' OR cvterm.name = 'assortment_derived_deficiency' OR cvterm.name = 'assortment_derived_aneuploid' OR cvterm.name = 'aneuploid' OR cvterm.name = 'polyploid' OR cvterm.name = 'hyperploid' OR cvterm.name = 'hypoploid' OR cvterm.name = 'autopolyploid' OR cvterm.name = 'allopolyploid' OR cvterm.name = 'free_chromosome_arm' OR cvterm.name = 'chromosomal_transposition' OR cvterm.name = 'aneuploid_chromosome' OR cvterm.name = 'intrachromosomal_mutation' OR cvterm.name = 'interchromosomal_mutation' OR cvterm.name = 'chromosomal_duplication' OR cvterm.name = 'compound_chromosome' OR cvterm.name = 'autosynaptic_chromosome' OR cvterm.name = 'complex_chromosomal_mutation' OR cvterm.name = 'uncharacterised_chromosomal_mutation' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'dexstrosynaptic_chromosome' OR cvterm.name = 'laevosynaptic_chromosome' OR cvterm.name = 'partially_characterised_chromosomal_mutation' OR cvterm.name = 'chromosome_variation';
---
>   WHERE cvterm.name = 'assortment_derived_duplication' OR cvterm.name = 'assortment_derived_deficiency_plus_duplication' OR cvterm.name = 'assortment_derived_deficiency' OR cvterm.name = 'assortment_derived_aneuploid' OR cvterm.name = 'chromosome_number_variation' OR cvterm.name = 'chromosome_structure_variation' OR cvterm.name = 'aneuploid' OR cvterm.name = 'polyploid' OR cvterm.name = 'hyperploid' OR cvterm.name = 'hypoploid' OR cvterm.name = 'autopolyploid' OR cvterm.name = 'allopolyploid' OR cvterm.name = 'free_chromosome_arm' OR cvterm.name = 'transposition' OR cvterm.name = 'aneuploid_chromosome' OR cvterm.name = 'intrachromosomal_mutation' OR cvterm.name = 'interchromosomal_mutation' OR cvterm.name = 'compound_chromosome' OR cvterm.name = 'autosynaptic_chromosome' OR cvterm.name = 'complex_chromosomal_mutation' OR cvterm.name = 'uncharacterised_chromosomal_mutation' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unorientated_interchromosomal_transposition' OR cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_duplication' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unorientated_interchromosomal_transposition' OR cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'dexstrosynaptic_chromosome' OR cvterm.name = 'laevosynaptic_chromosome' OR cvterm.name = 'partially_characterised_chromosomal_mutation' OR cvterm.name = 'chromosome_variation';
6860c6820
< --- *** A transposable_element that is engineere ***
---
> --- *** A transposible_element that is engineere ***
7097c7057
<   WHERE cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'recombination_signal_sequence' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'recombination_feature';
---
>   WHERE cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'recombination_feature';
7112c7072
<   WHERE cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'recombination_signal_sequence' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'specific_recombination_site';
---
>   WHERE cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'specific_recombination_site';
7180c7140
< --- *** relation: modified_base ***
---
> --- *** relation: modified_base_site ***
7184c7144
< --- ***  other than A, T, C. G.                  ***
---
> --- ***  other than A, T, C. G or (in RNA) U.    ***
7188c7148
< CREATE VIEW modified_base AS
---
> CREATE VIEW modified_base_site AS
7190c7150
<     feature_id AS modified_base_id,
---
>     feature_id AS modified_base_site_id,
7194c7154
<   WHERE cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'modified_base';
---
>   WHERE cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'modified_base_site';
7237c7197
< --- ***  been experimentally verified.           ***
---
> --- ***  been experiemntally verified.           ***
7556c7516
<   WHERE cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'RR_tract' OR cvterm.name = 'homologous_region' OR cvterm.name = 'centromere_DNA_Element_I' OR cvterm.name = 'centromere_DNA_Element_II' OR cvterm.name = 'centromere_DNA_Element_III' OR cvterm.name = 'X_element' OR cvterm.name = 'U_box' OR cvterm.name = 'regional_centromere_central_core' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'conserved_region';
---
>   WHERE cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'homologous_region' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'conserved_region';
7671c7631
<   WHERE cvterm.name = 'processed_pseudogene' OR cvterm.name = 'non_processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'duplicated_pseudogene' OR cvterm.name = 'unitary_pseudogene' OR cvterm.name = 'pseudogene';
---
>   WHERE cvterm.name = 'processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'pseudogene';
7889c7849
<   WHERE cvterm.name = 'DNA' OR cvterm.name = 'RNA' OR cvterm.name = 'morpholino_backbone' OR cvterm.name = 'PNA' OR cvterm.name = 'LNA' OR cvterm.name = 'TNA' OR cvterm.name = 'GNA' OR cvterm.name = 'cDNA' OR cvterm.name = 'genomic_DNA' OR cvterm.name = 'single_stranded_cDNA' OR cvterm.name = 'double_stranded_cDNA' OR cvterm.name = 'R_GNA' OR cvterm.name = 'S_GNA' OR cvterm.name = 'nucleic_acid';
---
>   WHERE cvterm.name = 'DNA' OR cvterm.name = 'RNA' OR cvterm.name = 'morpholino' OR cvterm.name = 'PNA' OR cvterm.name = 'LNA' OR cvterm.name = 'TNA' OR cvterm.name = 'GNA' OR cvterm.name = 'cDNA' OR cvterm.name = 'genomic_DNA' OR cvterm.name = 'single_stranded_cDNA' OR cvterm.name = 'double_stranded_cDNA' OR cvterm.name = 'R_GNA' OR cvterm.name = 'S_GNA' OR cvterm.name = 'nucleic_acid';
7985,7986d7944
< --- *** A region of intronic nucleotide sequence ***
< --- ***  targeted by a nuclease enzyme.          ***
8040,8041c7998,7999
< --- ***  bounded either side by a particular kin ***
< --- *** d of region.                             ***
---
> --- ***  bounded either side by a paricular kind ***
> --- ***  of region.                              ***
8147c8105
< --- *** nsposable element.                       ***
---
> --- *** nsposible element.                       ***
8579c8537
< --- *** ts best characterized activity is the ge ***
---
> --- *** ts best characterised activity is the ge ***
8692c8650
< --- *** se transcriptase that synthesizes telome ***
---
> --- *** se transcriptase that synthesises telome ***
8927c8885
<   WHERE cvterm.name = 'polymer_attribute' OR cvterm.name = 'feature_attribute' OR cvterm.name = 'sequence_location' OR cvterm.name = 'variant_quality' OR cvterm.name = 'nucleic_acid' OR cvterm.name = 'synthetic_sequence' OR cvterm.name = 'topology_attribute' OR cvterm.name = 'peptidyl' OR cvterm.name = 'DNA' OR cvterm.name = 'RNA' OR cvterm.name = 'morpholino_backbone' OR cvterm.name = 'PNA' OR cvterm.name = 'LNA' OR cvterm.name = 'TNA' OR cvterm.name = 'GNA' OR cvterm.name = 'cDNA' OR cvterm.name = 'genomic_DNA' OR cvterm.name = 'single_stranded_cDNA' OR cvterm.name = 'double_stranded_cDNA' OR cvterm.name = 'R_GNA' OR cvterm.name = 'S_GNA' OR cvterm.name = 'random_sequence' OR cvterm.name = 'designed_sequence' OR cvterm.name = 'linear' OR cvterm.name = 'circular' OR cvterm.name = 'transcript_attribute' OR cvterm.name = 'bound_by_factor' OR cvterm.name = 'flanked' OR cvterm.name = 'gene_attribute' OR cvterm.name = 'retrotransposed' OR cvterm.name = 'transgenic' OR cvterm.name = 'natural' OR cvterm.name = 'engineered' OR cvterm.name = 'foreign' OR cvterm.name = 'fusion' OR cvterm.name = 'rescue' OR cvterm.name = 'wild_type' OR cvterm.name = 'conserved' OR cvterm.name = 'status' OR cvterm.name = 'intermediate' OR cvterm.name = 'recombinationally_rearranged' OR cvterm.name = 'cryptic' OR cvterm.name = 'strand_attribute' OR cvterm.name = 'direction_attribute' OR cvterm.name = 'enzymatic' OR cvterm.name = 'mobile' OR cvterm.name = 'alteration_attribute' OR cvterm.name = 'experimental_feature_attribute' OR cvterm.name = 'edited' OR cvterm.name = 'capped' OR cvterm.name = 'mRNA_attribute' OR cvterm.name = 'trans_spliced' OR cvterm.name = 'alternatively_spliced' OR cvterm.name = 'monocistronic' OR cvterm.name = 'polycistronic' OR cvterm.name = 'polyadenylated' OR cvterm.name = 'exemplar' OR cvterm.name = 'frameshift' OR cvterm.name = 'recoded' OR cvterm.name = 'minus_1_frameshift' OR cvterm.name = 'minus_2_frameshift' OR cvterm.name = 'plus_1_frameshift' OR cvterm.name = 'plus_2_framshift' OR cvterm.name = 'codon_redefined' OR cvterm.name = 'recoded_by_translational_bypass' OR cvterm.name = 'translationally_frameshifted' OR cvterm.name = 'minus_1_translationally_frameshifted' OR cvterm.name = 'plus_1_translationally_frameshifted' OR cvterm.name = 'dicistronic' OR cvterm.name = 'bound_by_protein' OR cvterm.name = 'bound_by_nucleic_acid' OR cvterm.name = 'floxed' OR cvterm.name = 'FRT_flanked' OR cvterm.name = 'protein_coding' OR cvterm.name = 'non_protein_coding' OR cvterm.name = 'gene_to_gene_feature' OR cvterm.name = 'gene_array_member' OR cvterm.name = 'regulated' OR cvterm.name = 'epigenetically_modified' OR cvterm.name = 'encodes_alternately_spliced_transcripts' OR cvterm.name = 'encodes_alternate_transcription_start_sites' OR cvterm.name = 'intein_containing' OR cvterm.name = 'miRNA_encoding' OR cvterm.name = 'rRNA_encoding' OR cvterm.name = 'scRNA_encoding' OR cvterm.name = 'snoRNA_encoding' OR cvterm.name = 'snRNA_encoding' OR cvterm.name = 'SRP_RNA_encoding' OR cvterm.name = 'stRNA_encoding' OR cvterm.name = 'tmRNA_encoding' OR cvterm.name = 'tRNA_encoding' OR cvterm.name = 'gRNA_encoding' OR cvterm.name = 'C_D_box_snoRNA_encoding' OR cvterm.name = 'H_ACA_box_snoRNA_encoding' OR cvterm.name = 'overlapping' OR cvterm.name = 'inside_intron' OR cvterm.name = 'five_prime_three_prime_overlap' OR cvterm.name = 'five_prime_five_prime_overlap' OR cvterm.name = 'three_prime_three_prime_overlap' OR cvterm.name = 'three_prime_five_prime_overlap' OR cvterm.name = 'antisense' OR cvterm.name = 'inside_intron_antiparallel' OR cvterm.name = 'inside_intron_parallel' OR cvterm.name = 'operon_member' OR cvterm.name = 'gene_cassette_member' OR cvterm.name = 'gene_subarray_member' OR cvterm.name = 'member_of_regulon' OR cvterm.name = 'cassette_array_member' OR cvterm.name = 'transcriptionally_regulated' OR cvterm.name = 'post_translationally_regulated' OR cvterm.name = 'translationally_regulated' OR cvterm.name = 'imprinted' OR cvterm.name = 'transcriptionally_constitutive' OR cvterm.name = 'transcriptionally_induced' OR cvterm.name = 'transcriptionally_repressed' OR cvterm.name = 'autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'silenced' OR cvterm.name = 'silenced_by_DNA_modification' OR cvterm.name = 'silenced_by_RNA_interference' OR cvterm.name = 'silenced_by_histone_modification' OR cvterm.name = 'silenced_by_DNA_methylation' OR cvterm.name = 'silenced_by_histone_methylation' OR cvterm.name = 'silenced_by_histone_deacetylation' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'post_translationally_regulated_by_protein_stability' OR cvterm.name = 'post_translationally_regulated_by_protein_modification' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'imprinted' OR cvterm.name = 'allelically_excluded' OR cvterm.name = 'rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'encodes_1_polypeptide' OR cvterm.name = 'encodes_greater_than_1_polypeptide' OR cvterm.name = 'encodes_disjoint_polypeptides' OR cvterm.name = 'encodes_overlapping_peptides' OR cvterm.name = 'encodes_different_polypeptides_different_stop' OR cvterm.name = 'encodes_overlapping_peptides_different_start' OR cvterm.name = 'encodes_overlapping_polypeptides_different_start_and_stop' OR cvterm.name = 'homologous' OR cvterm.name = 'syntenic' OR cvterm.name = 'orthologous' OR cvterm.name = 'paralogous' OR cvterm.name = 'fragmentary' OR cvterm.name = 'predicted' OR cvterm.name = 'validated' OR cvterm.name = 'invalidated' OR cvterm.name = 'independently_known' OR cvterm.name = 'consensus' OR cvterm.name = 'low_complexity' OR cvterm.name = 'whole_genome_sequence_status' OR cvterm.name = 'supported_by_sequence_similarity' OR cvterm.name = 'orphan' OR cvterm.name = 'predicted_by_ab_initio_computation' OR cvterm.name = 'supported_by_domain_match' OR cvterm.name = 'supported_by_EST_or_cDNA' OR cvterm.name = 'experimentally_determined' OR cvterm.name = 'invalidated_by_chimeric_cDNA' OR cvterm.name = 'invalidated_by_genomic_contamination' OR cvterm.name = 'invalidated_by_genomic_polyA_primed_cDNA' OR cvterm.name = 'invalidated_by_partial_processing' OR cvterm.name = 'standard_draft' OR cvterm.name = 'high_quality_draft' OR cvterm.name = 'improved_high_quality_draft' OR cvterm.name = 'annotation_directed_improved_draft' OR cvterm.name = 'noncontiguous_finished' OR cvterm.name = 'finished_genome' OR cvterm.name = 'single' OR cvterm.name = 'double' OR cvterm.name = 'forward' OR cvterm.name = 'reverse' OR cvterm.name = 'ribozymic' OR cvterm.name = 'chromosomal_variation_attribute' OR cvterm.name = 'insertion_attribute' OR cvterm.name = 'inversion_attribute' OR cvterm.name = 'translocaton_attribute' OR cvterm.name = 'duplication_attribute' OR cvterm.name = 'intrachromosomal' OR cvterm.name = 'interchromosomal' OR cvterm.name = 'tandem' OR cvterm.name = 'direct' OR cvterm.name = 'inverted' OR cvterm.name = 'pericentric' OR cvterm.name = 'paracentric' OR cvterm.name = 'reciprocal' OR cvterm.name = 'insertional' OR cvterm.name = 'free' OR cvterm.name = 'score' OR cvterm.name = 'quality_value' OR cvterm.name = 'organelle_sequence' OR cvterm.name = 'plasmid_location' OR cvterm.name = 'proviral_location' OR cvterm.name = 'macronuclear_sequence' OR cvterm.name = 'micronuclear_sequence' OR cvterm.name = 'mitochondrial_sequence' OR cvterm.name = 'nuclear_sequence' OR cvterm.name = 'nucleomorphic_sequence' OR cvterm.name = 'plastid_sequence' OR cvterm.name = 'mitochondrial_DNA' OR cvterm.name = 'apicoplast_sequence' OR cvterm.name = 'chromoplast_sequence' OR cvterm.name = 'chloroplast_sequence' OR cvterm.name = 'cyanelle_sequence' OR cvterm.name = 'leucoplast_sequence' OR cvterm.name = 'proplastid_sequence' OR cvterm.name = 'chloroplast_DNA' OR cvterm.name = 'endogenous_retroviral_sequence' OR cvterm.name = 'variant_origin' OR cvterm.name = 'variant_frequency' OR cvterm.name = 'variant_phenotype' OR cvterm.name = 'maternal_variant' OR cvterm.name = 'paternal_variant' OR cvterm.name = 'somatic_variant' OR cvterm.name = 'germline_variant' OR cvterm.name = 'pedigree_specific_variant' OR cvterm.name = 'population_specific_variant' OR cvterm.name = 'de_novo_variant' OR cvterm.name = 'unique_variant' OR cvterm.name = 'rare_variant' OR cvterm.name = 'polymorphic_variant' OR cvterm.name = 'common_variant' OR cvterm.name = 'fixed_variant' OR cvterm.name = 'benign_variant' OR cvterm.name = 'disease_associated_variant' OR cvterm.name = 'disease_causing_variant' OR cvterm.name = 'lethal_variant' OR cvterm.name = 'quantitative_variant' OR cvterm.name = 'sequence_attribute';
---
>   WHERE cvterm.name = 'polymer_attribute' OR cvterm.name = 'feature_attribute' OR cvterm.name = 'sequence_location' OR cvterm.name = 'nucleic_acid' OR cvterm.name = 'synthetic_sequence' OR cvterm.name = 'topology_attribute' OR cvterm.name = 'peptidyl' OR cvterm.name = 'DNA' OR cvterm.name = 'RNA' OR cvterm.name = 'morpholino' OR cvterm.name = 'PNA' OR cvterm.name = 'LNA' OR cvterm.name = 'TNA' OR cvterm.name = 'GNA' OR cvterm.name = 'cDNA' OR cvterm.name = 'genomic_DNA' OR cvterm.name = 'single_stranded_cDNA' OR cvterm.name = 'double_stranded_cDNA' OR cvterm.name = 'R_GNA' OR cvterm.name = 'S_GNA' OR cvterm.name = 'random_sequence' OR cvterm.name = 'designed_sequence' OR cvterm.name = 'linear' OR cvterm.name = 'circular' OR cvterm.name = 'transcript_attribute' OR cvterm.name = 'bound_by_factor' OR cvterm.name = 'flanked' OR cvterm.name = 'gene_attribute' OR cvterm.name = 'retrotransposed' OR cvterm.name = 'transgenic' OR cvterm.name = 'natural' OR cvterm.name = 'engineered' OR cvterm.name = 'foreign' OR cvterm.name = 'fusion' OR cvterm.name = 'rescue' OR cvterm.name = 'wild_type' OR cvterm.name = 'conserved' OR cvterm.name = 'status' OR cvterm.name = 'intermediate' OR cvterm.name = 'recombinationally_rearranged' OR cvterm.name = 'cryptic' OR cvterm.name = 'strand_attribute' OR cvterm.name = 'direction_attribute' OR cvterm.name = 'enzymatic' OR cvterm.name = 'mobile' OR cvterm.name = 'edited' OR cvterm.name = 'capped' OR cvterm.name = 'mRNA_attribute' OR cvterm.name = 'trans_spliced' OR cvterm.name = 'alternatively_spliced' OR cvterm.name = 'monocistronic' OR cvterm.name = 'polycistronic' OR cvterm.name = 'polyadenylated' OR cvterm.name = 'exemplar' OR cvterm.name = 'frameshift' OR cvterm.name = 'recoded' OR cvterm.name = 'minus_1_frameshift' OR cvterm.name = 'minus_2_frameshift' OR cvterm.name = 'plus_1_frameshift' OR cvterm.name = 'plus_2_framshift' OR cvterm.name = 'codon_redefined' OR cvterm.name = 'recoded_by_translational_bypass' OR cvterm.name = 'translationally_frameshifted' OR cvterm.name = 'minus_1_translationally_frameshifted' OR cvterm.name = 'plus_1_translationally_frameshifted' OR cvterm.name = 'dicistronic' OR cvterm.name = 'bound_by_protein' OR cvterm.name = 'bound_by_nucleic_acid' OR cvterm.name = 'floxed' OR cvterm.name = 'FRT_flanked' OR cvterm.name = 'protein_coding' OR cvterm.name = 'non_protein_coding' OR cvterm.name = 'gene_to_gene_feature' OR cvterm.name = 'gene_array_member' OR cvterm.name = 'regulated' OR cvterm.name = 'epigenetically_modified' OR cvterm.name = 'encodes_alternately_spliced_transcripts' OR cvterm.name = 'encodes_alternate_transcription_start_sites' OR cvterm.name = 'intein_containing' OR cvterm.name = 'miRNA_encoding' OR cvterm.name = 'rRNA_encoding' OR cvterm.name = 'scRNA_encoding' OR cvterm.name = 'snoRNA_encoding' OR cvterm.name = 'snRNA_encoding' OR cvterm.name = 'SRP_RNA_encoding' OR cvterm.name = 'stRNA_encoding' OR cvterm.name = 'tmRNA_encoding' OR cvterm.name = 'tRNA_encoding' OR cvterm.name = 'gRNA_encoding' OR cvterm.name = 'C_D_box_snoRNA_encoding' OR cvterm.name = 'H_ACA_box_snoRNA_encoding' OR cvterm.name = 'overlapping' OR cvterm.name = 'inside_intron' OR cvterm.name = 'five_prime_three_prime_overlap' OR cvterm.name = 'five_prime_five_prime_overlap' OR cvterm.name = 'three_prime_three_prime_overlap' OR cvterm.name = 'three_prime_five_prime_overlap' OR cvterm.name = 'antisense' OR cvterm.name = 'inside_intron_antiparallel' OR cvterm.name = 'inside_intron_parallel' OR cvterm.name = 'operon_member' OR cvterm.name = 'gene_cassette_member' OR cvterm.name = 'gene_subarray_member' OR cvterm.name = 'member_of_regulon' OR cvterm.name = 'cassette_array_member' OR cvterm.name = 'transcriptionally_regulated' OR cvterm.name = 'post_translationally_regulated' OR cvterm.name = 'translationally_regulated' OR cvterm.name = 'imprinted' OR cvterm.name = 'transcriptionally_constitutive' OR cvterm.name = 'transcriptionally_induced' OR cvterm.name = 'transcriptionally_repressed' OR cvterm.name = 'autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'silenced' OR cvterm.name = 'silenced_by_DNA_modification' OR cvterm.name = 'silenced_by_RNA_interference' OR cvterm.name = 'silenced_by_histone_modification' OR cvterm.name = 'silenced_by_DNA_methylation' OR cvterm.name = 'silenced_by_histone_methylation' OR cvterm.name = 'silenced_by_histone_deacetylation' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'post_translationally_regulated_by_protein_stability' OR cvterm.name = 'post_translationally_regulated_by_protein_modification' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'imprinted' OR cvterm.name = 'allelically_excluded' OR cvterm.name = 'rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'encodes_1_polypeptide' OR cvterm.name = 'encodes_greater_than_1_polypeptide' OR cvterm.name = 'encodes_disjoint_polypeptides' OR cvterm.name = 'encodes_overlapping_peptides' OR cvterm.name = 'encodes_different_polypeptides_different_stop' OR cvterm.name = 'encodes_overlapping_peptides_different_start' OR cvterm.name = 'encodes_overlapping_polypeptides_different_start_and_stop' OR cvterm.name = 'homologous' OR cvterm.name = 'syntenic' OR cvterm.name = 'orthologous' OR cvterm.name = 'paralogous' OR cvterm.name = 'fragmentary' OR cvterm.name = 'predicted' OR cvterm.name = 'validated' OR cvterm.name = 'invalidated' OR cvterm.name = 'independently_known' OR cvterm.name = 'consensus' OR cvterm.name = 'low_complexity' OR cvterm.name = 'supported_by_sequence_similarity' OR cvterm.name = 'orphan' OR cvterm.name = 'predicted_by_ab_initio_computation' OR cvterm.name = 'supported_by_domain_match' OR cvterm.name = 'supported_by_EST_or_cDNA' OR cvterm.name = 'experimentally_determined' OR cvterm.name = 'invalidated_by_chimeric_cDNA' OR cvterm.name = 'invalidated_by_genomic_contamination' OR cvterm.name = 'invalidated_by_genomic_polyA_primed_cDNA' OR cvterm.name = 'invalidated_by_partial_processing' OR cvterm.name = 'single' OR cvterm.name = 'double' OR cvterm.name = 'forward' OR cvterm.name = 'reverse' OR cvterm.name = 'ribozymic' OR cvterm.name = 'organelle_sequence' OR cvterm.name = 'plasmid_location' OR cvterm.name = 'proviral_location' OR cvterm.name = 'macronuclear_sequence' OR cvterm.name = 'micronuclear_sequence' OR cvterm.name = 'mitochondrial_sequence' OR cvterm.name = 'nuclear_sequence' OR cvterm.name = 'nucleomorphic_sequence' OR cvterm.name = 'plastid_sequence' OR cvterm.name = 'mitochondrial_DNA' OR cvterm.name = 'apicoplast_sequence' OR cvterm.name = 'chromoplast_sequence' OR cvterm.name = 'chloroplast_sequence' OR cvterm.name = 'cyanelle_sequence' OR cvterm.name = 'leucoplast_sequence' OR cvterm.name = 'proplastid_sequence' OR cvterm.name = 'chloroplast_DNA' OR cvterm.name = 'endogenous_retroviral_sequence' OR cvterm.name = 'sequence_attribute';
9058,9067c9016,9022
< --- *** A biological_region of sequence that, in ***
< --- ***  the molecule, interacts selectively and ***
< --- ***  non-covalently with other molecules. A  ***
< --- *** region on the surface of a molecule that ***
< --- ***  may interact with another molecule. Whe ***
< --- *** n applied to polypeptides: Amino acids i ***
< --- *** nvolved in binding or interactions. It c ***
< --- *** an also apply to an amino acid bond whic ***
< --- *** h is represented by the positions of the ***
< --- ***  two flanking amino acids.               ***
---
> --- *** A region on the surface of a molecule th ***
> --- *** at may interact with another molecule. W ***
> --- *** hen applied to polypeptides: Amino acids ***
> --- ***  involved in binding or interactions. It ***
> --- ***  can also apply to an amino acid bond wh ***
> --- *** ich is represented by the positions of t ***
> --- *** he two flanking amino acids.             ***
9077c9032
<   WHERE cvterm.name = 'protein_binding_site' OR cvterm.name = 'epitope' OR cvterm.name = 'nucleotide_binding_site' OR cvterm.name = 'metal_binding_site' OR cvterm.name = 'ligand_binding_site' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'nucleotide_to_protein_binding_site' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'binding_site';
---
>   WHERE cvterm.name = 'protein_binding_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'epitope' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'binding_site';
9083,9085c9038,9039
< --- *** A binding site that, in the molecule, in ***
< --- *** teracts selectively and non-covalently w ***
< --- *** ith polypeptide molecules.               ***
---
> --- *** A region of a molecule that binds to a p ***
> --- *** rotein.                                  ***
9095c9049
<   WHERE cvterm.name = 'protein_protein_contact' OR cvterm.name = 'nucleotide_to_protein_binding_site' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'protein_binding_site';
---
>   WHERE cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'protein_binding_site';
9146c9100
<   WHERE cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'assembly_error_correction' OR cvterm.name = 'base_call_error_correction' OR cvterm.name = 'sequence_difference';
---
>   WHERE cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'sequence_difference';
9555c9509
<   WHERE cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'vector_replicon';
---
>   WHERE cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'vector_replicon';
9571c9525
<   WHERE cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ASPE_primer' OR cvterm.name = 'dCAPS_primer' OR cvterm.name = 'ss_oligo';
---
>   WHERE cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ss_oligo';
9604c9558
<   WHERE cvterm.name = 'nucleic_acid' OR cvterm.name = 'synthetic_sequence' OR cvterm.name = 'topology_attribute' OR cvterm.name = 'peptidyl' OR cvterm.name = 'DNA' OR cvterm.name = 'RNA' OR cvterm.name = 'morpholino_backbone' OR cvterm.name = 'PNA' OR cvterm.name = 'LNA' OR cvterm.name = 'TNA' OR cvterm.name = 'GNA' OR cvterm.name = 'cDNA' OR cvterm.name = 'genomic_DNA' OR cvterm.name = 'single_stranded_cDNA' OR cvterm.name = 'double_stranded_cDNA' OR cvterm.name = 'R_GNA' OR cvterm.name = 'S_GNA' OR cvterm.name = 'random_sequence' OR cvterm.name = 'designed_sequence' OR cvterm.name = 'linear' OR cvterm.name = 'circular' OR cvterm.name = 'polymer_attribute';
---
>   WHERE cvterm.name = 'nucleic_acid' OR cvterm.name = 'synthetic_sequence' OR cvterm.name = 'topology_attribute' OR cvterm.name = 'peptidyl' OR cvterm.name = 'DNA' OR cvterm.name = 'RNA' OR cvterm.name = 'morpholino' OR cvterm.name = 'PNA' OR cvterm.name = 'LNA' OR cvterm.name = 'TNA' OR cvterm.name = 'GNA' OR cvterm.name = 'cDNA' OR cvterm.name = 'genomic_DNA' OR cvterm.name = 'single_stranded_cDNA' OR cvterm.name = 'double_stranded_cDNA' OR cvterm.name = 'R_GNA' OR cvterm.name = 'S_GNA' OR cvterm.name = 'random_sequence' OR cvterm.name = 'designed_sequence' OR cvterm.name = 'linear' OR cvterm.name = 'circular' OR cvterm.name = 'polymer_attribute';
9741c9695
< --- *** relation: chromosomal_transposition ***
---
> --- *** relation: transposition ***
9744,9752d9697
< --- *** A chromosome structure variant whereby a ***
< --- ***  region of a chromosome has been transfe ***
< --- *** rred to another position. Among interchr ***
< --- *** omosomal rearrangements, the term transp ***
< --- *** osition is reserved for that class in wh ***
< --- *** ich the telomeres of the chromosomes inv ***
< --- *** olved are coupled (that is to say, form  ***
< --- *** the two ends of a single DNA molecule) a ***
< --- *** s in wild-type.                          ***
9756c9701
< CREATE VIEW chromosomal_transposition AS
---
> CREATE VIEW transposition AS
9758c9703
<     feature_id AS chromosomal_transposition_id,
---
>     feature_id AS transposition_id,
9762c9707
<   WHERE cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'chromosomal_transposition';
---
>   WHERE cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unorientated_interchromosomal_transposition' OR cvterm.name = 'transposition';
9768,9770c9713,9715
< --- *** A 17-28-nt, small interfering RNA derive ***
< --- *** d from transcripts of repetitive element ***
< --- *** s.                                       ***
---
> --- *** A small, 17-28-nt, small interfering RNA ***
> --- ***  derived from transcripts of repetitive  ***
> --- *** elements.                                ***
9887,9890c9832,9834
< --- *** A chromosomal deletion whereby a chromos ***
< --- *** ome generated by recombination between t ***
< --- *** wo inversions; has a deficiency at each  ***
< --- *** end of the inversion.                    ***
---
> --- *** A chromosome generated by recombination  ***
> --- *** between two inversions; has a deficiency ***
> --- ***  at each end of the inversion.           ***
9917c9861
<   WHERE cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'pseudogenic_region';
---
>   WHERE cvterm.name = 'pseudogene' OR cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'pseudogenic_region';
9956,9960c9900,9904
< --- *** A chromosome deletion whereby a chromoso ***
< --- *** me is generated by recombination between ***
< --- ***  two inversions; there is a deficiency a ***
< --- *** t one end of the inversion and a duplica ***
< --- *** tion at the other end of the inversion.  ***
---
> --- *** A chromosome generated by recombination  ***
> --- *** between two inversions; there is a defic ***
> --- *** iency at one end of the inversion and a  ***
> --- *** duplication at the other end of the inve ***
> --- *** rsion.                                   ***
10229,10230c10173,10174
< --- *** An inverted repeat (SO:0000294) occurrin ***
< --- *** g at the termini of a DNA transposon.    ***
---
> --- *** An inverted repeat (SO:0000294) occuring ***
> --- ***  at the termini of a DNA transposon.     ***
10272c10216
<   WHERE cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'tasiRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'nc_primary_transcript';
---
>   WHERE cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'nc_primary_transcript';
10760,10765c10704,10708
< --- *** A chromosomal deletion whereby a chromos ***
< --- *** ome generated by recombination between t ***
< --- *** wo inversions; has a deficiency at one e ***
< --- *** nd and presumed to have a deficiency or  ***
< --- *** duplication at the other end of the inve ***
< --- *** rsion.                                   ***
---
> --- *** A chromosome generated by recombination  ***
> --- *** between two inversions; has a deficiency ***
> --- ***  at one end and presumed to have a defic ***
> --- *** iency or duplication at the other end of ***
> --- ***  the inversion.                          ***
11456,11459d11398
< --- *** A chromosome structural variation whereb ***
< --- *** y either a chromosome exists in addition ***
< --- ***  to the normal chromosome complement or  ***
< --- *** is lacking.                              ***
11469c11408
<   WHERE cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'aneuploid_chromosome';
---
>   WHERE cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_duplication' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'aneuploid_chromosome';
11494,11496c11433,11434
< --- *** A region in the 5' UTR that pairs with t ***
< --- *** he 16S rRNA during formation of the prei ***
< --- *** nitiation complex.                       ***
---
> --- *** Region in 5' UTR where ribosome assemble ***
> --- *** s on mRNA.                               ***
11514,11516c11452
< --- *** anscriptional polyadenylation. The bound ***
< --- *** ary between the UTR and the polyA sequen ***
< --- *** ce.                                      ***
---
> --- *** anscriptional polyadenylation.           ***
11749,11751c11685,11687
< --- *** nation between two inversions; presumed  ***
< --- *** to have a deficiency or duplication at e ***
< --- *** ach end of the inversion.                ***
---
> --- *** nation between two inverversions; presum ***
> --- *** ed to have a deficiency or duplication a ***
> --- *** t each end of the inversion.             ***
11782,11784c11718,11720
< --- *** An attribute of a feature that occurred  ***
< --- *** as the product of a reverse transcriptas ***
< --- *** e mediated event.                        ***
---
> --- *** An attribute of a feature that occured a ***
> --- *** s the product of a reverse transcriptase ***
> --- ***  mediated event.                         ***
11935c11871
<   WHERE cvterm.name = 'point_centromere' OR cvterm.name = 'regional_centromere' OR cvterm.name = 'centromere';
---
>   WHERE cvterm.name = 'centromere';
12056c11992
< --- *** lasts but are absent from archeal and Eu ***
---
> --- *** lasts but are absent from archeal and eu ***
12106c12042
< --- *** -splicing ribozymes. They catalyze their ***
---
> --- *** -splicing ribozymes. They catalyse their ***
12572c12508
<   WHERE cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'bacterial_RNApol_promoter';
---
>   WHERE cvterm.name = 'bacterial_RNApol_promoter';
12659c12595
< --- *** n recognized by TFIIIC, with consensus s ***
---
> --- *** n recognised by TFIIIC, with consensus s ***
12670c12606
<   WHERE cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'A_box';
---
>   WHERE cvterm.name = 'A_box';
12677c12613
< --- *** n recognized by TFIIIC, with consensus s ***
---
> --- *** n recognised by TFIIIC, with consensus s ***
12793,12796c12729,12732
< --- *** A transcriptional cis regulatory region  ***
< --- *** that when located between a CM and a gen ***
< --- *** e's promoter prevents the CRM from modul ***
< --- *** ating that genes expression.             ***
---
> --- *** A trancriptional cis regulatory region t ***
> --- *** hat when located between a CM and a gene ***
> --- *** 's promoter prevents the CRM from modula ***
> --- *** ting that genes expression.              ***
12821c12757
<   WHERE cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'point_centromere' OR cvterm.name = 'regional_centromere' OR cvterm.name = 'chromosomal_structural_element';
---
>   WHERE cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'chromosomal_structural_element';
13236c13172
< --- ***  also stabilizes 5S rRNA until it is req ***
---
> --- ***  also stabilises 5S rRNA until it is req ***
13299c13235
<   WHERE cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'tasiRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ncRNA';
---
>   WHERE cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ncRNA';
13331c13267
<   WHERE cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'X_element_combinatorial_repeat' OR cvterm.name = 'Y_prime_element' OR cvterm.name = 'telomeric_repeat' OR cvterm.name = 'nested_repeat' OR cvterm.name = 'centromeric_repeat' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'nested_tandem_repeat' OR cvterm.name = 'regional_centromere_inner_repeat_region' OR cvterm.name = 'regional_centromere_outer_repeat_region' OR cvterm.name = 'repeat_region';
---
>   WHERE cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'repeat_region';
13451,13453c13387,13388
< --- *** The sequence of one or more nucleotides  ***
< --- *** added between two adjacent nucleotides i ***
< --- *** n the sequence.                          ***
---
> --- *** A region of sequence that has been inser ***
> --- *** ted.                                     ***
13463c13398
<   WHERE cvterm.name = 'transgenic_insertion' OR cvterm.name = 'duplication' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'insertion';
---
>   WHERE cvterm.name = 'transgenic_insertion' OR cvterm.name = 'insertion';
13494c13429
<   WHERE cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'recombination_signal_sequence' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'sequence_rearrangement_feature';
---
>   WHERE cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'sequence_rearrangement_feature';
13566c13501
<   WHERE cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'processed_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'tasiRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'tasiRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'transcript';
---
>   WHERE cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'transcript';
13726,13732c13661,13666
< --- *** A chromosomal translocation whereby the  ***
< --- *** chromosomes carrying non-homologous cent ***
< --- *** romeres may be recovered independently.  ***
< --- *** These chromosomes are described as trans ***
< --- *** location elements. This occurs for some  ***
< --- *** translocations, particularly but not exc ***
< --- *** lusively, reciprocal translocations.     ***
---
> --- *** For some translocations, particularly bu ***
> --- *** t not exclusively, reciprocal translocat ***
> --- *** ions, the chromosomes carrying non-homol ***
> --- *** ogous centromeres may be recovered indep ***
> --- *** endently. These chromosomes are describe ***
> --- *** d as translocation elements.             ***
13871,13874c13805,13808
< --- *** lternatives exist in normal individuals  ***
< --- *** in some population(s), wherein the least ***
< --- ***  frequent variant has an abundance of 1% ***
< --- ***  or greater.                             ***
---
> --- *** lternatives (alleles) exist in normal in ***
> --- *** dividuals in some population(s), wherein ***
> --- ***  the least frequent allele has an abunda ***
> --- *** nce of 1% or greater.                    ***
13900c13834
<   WHERE cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ASPE_primer' OR cvterm.name = 'dCAPS_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'reagent';
---
>   WHERE cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'reagent';
13918c13852
<   WHERE cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ASPE_primer' OR cvterm.name = 'dCAPS_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'oligo';
---
>   WHERE cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'oligo';
13969c13903
<   WHERE cvterm.name = 'clone_insert_end' OR cvterm.name = 'clone_insert_start' OR cvterm.name = 'exon_junction' OR cvterm.name = 'insertion_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'deletion_junction' OR cvterm.name = 'chromosome_breakpoint' OR cvterm.name = 'splice_junction' OR cvterm.name = 'trans_splice_junction' OR cvterm.name = 'restriction_enzyme_cleavage_junction' OR cvterm.name = 'transposable_element_insertion_site' OR cvterm.name = 'inversion_breakpoint' OR cvterm.name = 'translocation_breakpoint' OR cvterm.name = 'insertion_breakpoint' OR cvterm.name = 'deletion_breakpoint' OR cvterm.name = 'blunt_end_restriction_enzyme_cleavage_junction' OR cvterm.name = 'single_strand_restriction_enzyme_cleavage_site' OR cvterm.name = 'five_prime_restriction_enzyme_junction' OR cvterm.name = 'three_prime_restriction_enzyme_junction' OR cvterm.name = 'junction';
---
>   WHERE cvterm.name = 'clone_insert_end' OR cvterm.name = 'clone_insert_start' OR cvterm.name = 'exon_junction' OR cvterm.name = 'insertion_site' OR cvterm.name = 'deletion_junction' OR cvterm.name = 'chromosome_breakpoint' OR cvterm.name = 'splice_junction' OR cvterm.name = 'polyA_junction' OR cvterm.name = 'trans_splice_junction' OR cvterm.name = 'transposable_element_insertion_site' OR cvterm.name = 'inversion_breakpoint' OR cvterm.name = 'translocation_breakpoint' OR cvterm.name = 'insertion_breakpoint' OR cvterm.name = 'deletion_breakpoint' OR cvterm.name = 'junction';
13985c13919
<   WHERE cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'assembly_error_correction' OR cvterm.name = 'base_call_error_correction' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'contig_collection' OR cvterm.name = 'remark';
---
>   WHERE cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'remark';
14057c13991
<   WHERE cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_with_non_canonical_start_codon' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'rRNA_gene' OR cvterm.name = 'piRNA_gene' OR cvterm.name = 'RNase_P_RNA_gene' OR cvterm.name = 'RNase_MRP_RNA_gene' OR cvterm.name = 'lincRNA_gene' OR cvterm.name = 'telomerase_RNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'gene_with_start_codon_CUG' OR cvterm.name = 'gene';
---
>   WHERE cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'gene';
14091c14025
<   WHERE cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'trans_splice_acceptor_site';
---
>   WHERE cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'trans_splice_acceptor_site';
14114,14116d14047
< --- *** A trans_splicing_acceptor_site which app ***
< --- *** ends the 22nt SL1 RNA leader sequence to ***
< --- ***  the 5' end of most mRNAs.               ***
14132,14136d14062
< --- *** A trans_splicing_acceptor_site which app ***
< --- *** ends the 22nt SL2 RNA leader sequence to ***
< --- ***  the 5' end of mRNAs. SL2 acceptor sites ***
< --- ***  occur in genes in internal segments of  ***
< --- *** polycistronic transcripts.               ***
14146c14072
<   WHERE cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'SL2_acceptor_site';
---
>   WHERE cvterm.name = 'SL2_acceptor_site';
14214c14140
<   WHERE cvterm.name = 'PSE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'retinoic_acid_responsive_element' OR cvterm.name = 'promoter_element' OR cvterm.name = 'DCE_SI' OR cvterm.name = 'DCE_SII' OR cvterm.name = 'DCE_SIII' OR cvterm.name = 'minus_12_signal' OR cvterm.name = 'minus_24_signal' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'core_promoter_element' OR cvterm.name = 'regulatory_promoter_element' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'DNA_motif';
---
>   WHERE cvterm.name = 'PSE_motif' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'DNA_motif';
14231c14157
<   WHERE cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'retinoic_acid_responsive_element' OR cvterm.name = 'promoter_element' OR cvterm.name = 'DCE_SI' OR cvterm.name = 'DCE_SII' OR cvterm.name = 'DCE_SIII' OR cvterm.name = 'minus_12_signal' OR cvterm.name = 'minus_24_signal' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'core_promoter_element' OR cvterm.name = 'regulatory_promoter_element' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'nucleotide_motif';
---
>   WHERE cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'nucleotide_motif';
14466c14392
<   WHERE cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'CRM';
---
>   WHERE cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'CRM';
14570c14496
<   WHERE cvterm.name = 'transcript_attribute' OR cvterm.name = 'bound_by_factor' OR cvterm.name = 'flanked' OR cvterm.name = 'gene_attribute' OR cvterm.name = 'retrotransposed' OR cvterm.name = 'transgenic' OR cvterm.name = 'natural' OR cvterm.name = 'engineered' OR cvterm.name = 'foreign' OR cvterm.name = 'fusion' OR cvterm.name = 'rescue' OR cvterm.name = 'wild_type' OR cvterm.name = 'conserved' OR cvterm.name = 'status' OR cvterm.name = 'intermediate' OR cvterm.name = 'recombinationally_rearranged' OR cvterm.name = 'cryptic' OR cvterm.name = 'strand_attribute' OR cvterm.name = 'direction_attribute' OR cvterm.name = 'enzymatic' OR cvterm.name = 'mobile' OR cvterm.name = 'alteration_attribute' OR cvterm.name = 'experimental_feature_attribute' OR cvterm.name = 'edited' OR cvterm.name = 'capped' OR cvterm.name = 'mRNA_attribute' OR cvterm.name = 'trans_spliced' OR cvterm.name = 'alternatively_spliced' OR cvterm.name = 'monocistronic' OR cvterm.name = 'polycistronic' OR cvterm.name = 'polyadenylated' OR cvterm.name = 'exemplar' OR cvterm.name = 'frameshift' OR cvterm.name = 'recoded' OR cvterm.name = 'minus_1_frameshift' OR cvterm.name = 'minus_2_frameshift' OR cvterm.name = 'plus_1_frameshift' OR cvterm.name = 'plus_2_framshift' OR cvterm.name = 'codon_redefined' OR cvterm.name = 'recoded_by_translational_bypass' OR cvterm.name = 'translationally_frameshifted' OR cvterm.name = 'minus_1_translationally_frameshifted' OR cvterm.name = 'plus_1_translationally_frameshifted' OR cvterm.name = 'dicistronic' OR cvterm.name = 'bound_by_protein' OR cvterm.name = 'bound_by_nucleic_acid' OR cvterm.name = 'floxed' OR cvterm.name = 'FRT_flanked' OR cvterm.name = 'protein_coding' OR cvterm.name = 'non_protein_coding' OR cvterm.name = 'gene_to_gene_feature' OR cvterm.name = 'gene_array_member' OR cvterm.name = 'regulated' OR cvterm.name = 'epigenetically_modified' OR cvterm.name = 'encodes_alternately_spliced_transcripts' OR cvterm.name = 'encodes_alternate_transcription_start_sites' OR cvterm.name = 'intein_containing' OR cvterm.name = 'miRNA_encoding' OR cvterm.name = 'rRNA_encoding' OR cvterm.name = 'scRNA_encoding' OR cvterm.name = 'snoRNA_encoding' OR cvterm.name = 'snRNA_encoding' OR cvterm.name = 'SRP_RNA_encoding' OR cvterm.name = 'stRNA_encoding' OR cvterm.name = 'tmRNA_encoding' OR cvterm.name = 'tRNA_encoding' OR cvterm.name = 'gRNA_encoding' OR cvterm.name = 'C_D_box_snoRNA_encoding' OR cvterm.name = 'H_ACA_box_snoRNA_encoding' OR cvterm.name = 'overlapping' OR cvterm.name = 'inside_intron' OR cvterm.name = 'five_prime_three_prime_overlap' OR cvterm.name = 'five_prime_five_prime_overlap' OR cvterm.name = 'three_prime_three_prime_overlap' OR cvterm.name = 'three_prime_five_prime_overlap' OR cvterm.name = 'antisense' OR cvterm.name = 'inside_intron_antiparallel' OR cvterm.name = 'inside_intron_parallel' OR cvterm.name = 'operon_member' OR cvterm.name = 'gene_cassette_member' OR cvterm.name = 'gene_subarray_member' OR cvterm.name = 'member_of_regulon' OR cvterm.name = 'cassette_array_member' OR cvterm.name = 'transcriptionally_regulated' OR cvterm.name = 'post_translationally_regulated' OR cvterm.name = 'translationally_regulated' OR cvterm.name = 'imprinted' OR cvterm.name = 'transcriptionally_constitutive' OR cvterm.name = 'transcriptionally_induced' OR cvterm.name = 'transcriptionally_repressed' OR cvterm.name = 'autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'silenced' OR cvterm.name = 'silenced_by_DNA_modification' OR cvterm.name = 'silenced_by_RNA_interference' OR cvterm.name = 'silenced_by_histone_modification' OR cvterm.name = 'silenced_by_DNA_methylation' OR cvterm.name = 'silenced_by_histone_methylation' OR cvterm.name = 'silenced_by_histone_deacetylation' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'post_translationally_regulated_by_protein_stability' OR cvterm.name = 'post_translationally_regulated_by_protein_modification' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'imprinted' OR cvterm.name = 'allelically_excluded' OR cvterm.name = 'rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'encodes_1_polypeptide' OR cvterm.name = 'encodes_greater_than_1_polypeptide' OR cvterm.name = 'encodes_disjoint_polypeptides' OR cvterm.name = 'encodes_overlapping_peptides' OR cvterm.name = 'encodes_different_polypeptides_different_stop' OR cvterm.name = 'encodes_overlapping_peptides_different_start' OR cvterm.name = 'encodes_overlapping_polypeptides_different_start_and_stop' OR cvterm.name = 'homologous' OR cvterm.name = 'syntenic' OR cvterm.name = 'orthologous' OR cvterm.name = 'paralogous' OR cvterm.name = 'fragmentary' OR cvterm.name = 'predicted' OR cvterm.name = 'validated' OR cvterm.name = 'invalidated' OR cvterm.name = 'independently_known' OR cvterm.name = 'consensus' OR cvterm.name = 'low_complexity' OR cvterm.name = 'whole_genome_sequence_status' OR cvterm.name = 'supported_by_sequence_similarity' OR cvterm.name = 'orphan' OR cvterm.name = 'predicted_by_ab_initio_computation' OR cvterm.name = 'supported_by_domain_match' OR cvterm.name = 'supported_by_EST_or_cDNA' OR cvterm.name = 'experimentally_determined' OR cvterm.name = 'invalidated_by_chimeric_cDNA' OR cvterm.name = 'invalidated_by_genomic_contamination' OR cvterm.name = 'invalidated_by_genomic_polyA_primed_cDNA' OR cvterm.name = 'invalidated_by_partial_processing' OR cvterm.name = 'standard_draft' OR cvterm.name = 'high_quality_draft' OR cvterm.name = 'improved_high_quality_draft' OR cvterm.name = 'annotation_directed_improved_draft' OR cvterm.name = 'noncontiguous_finished' OR cvterm.name = 'finished_genome' OR cvterm.name = 'single' OR cvterm.name = 'double' OR cvterm.name = 'forward' OR cvterm.name = 'reverse' OR cvterm.name = 'ribozymic' OR cvterm.name = 'chromosomal_variation_attribute' OR cvterm.name = 'insertion_attribute' OR cvterm.name = 'inversion_attribute' OR cvterm.name = 'translocaton_attribute' OR cvterm.name = 'duplication_attribute' OR cvterm.name = 'intrachromosomal' OR cvterm.name = 'interchromosomal' OR cvterm.name = 'tandem' OR cvterm.name = 'direct' OR cvterm.name = 'inverted' OR cvterm.name = 'pericentric' OR cvterm.name = 'paracentric' OR cvterm.name = 'reciprocal' OR cvterm.name = 'insertional' OR cvterm.name = 'free' OR cvterm.name = 'score' OR cvterm.name = 'quality_value' OR cvterm.name = 'feature_attribute';
---
>   WHERE cvterm.name = 'transcript_attribute' OR cvterm.name = 'bound_by_factor' OR cvterm.name = 'flanked' OR cvterm.name = 'gene_attribute' OR cvterm.name = 'retrotransposed' OR cvterm.name = 'transgenic' OR cvterm.name = 'natural' OR cvterm.name = 'engineered' OR cvterm.name = 'foreign' OR cvterm.name = 'fusion' OR cvterm.name = 'rescue' OR cvterm.name = 'wild_type' OR cvterm.name = 'conserved' OR cvterm.name = 'status' OR cvterm.name = 'intermediate' OR cvterm.name = 'recombinationally_rearranged' OR cvterm.name = 'cryptic' OR cvterm.name = 'strand_attribute' OR cvterm.name = 'direction_attribute' OR cvterm.name = 'enzymatic' OR cvterm.name = 'mobile' OR cvterm.name = 'edited' OR cvterm.name = 'capped' OR cvterm.name = 'mRNA_attribute' OR cvterm.name = 'trans_spliced' OR cvterm.name = 'alternatively_spliced' OR cvterm.name = 'monocistronic' OR cvterm.name = 'polycistronic' OR cvterm.name = 'polyadenylated' OR cvterm.name = 'exemplar' OR cvterm.name = 'frameshift' OR cvterm.name = 'recoded' OR cvterm.name = 'minus_1_frameshift' OR cvterm.name = 'minus_2_frameshift' OR cvterm.name = 'plus_1_frameshift' OR cvterm.name = 'plus_2_framshift' OR cvterm.name = 'codon_redefined' OR cvterm.name = 'recoded_by_translational_bypass' OR cvterm.name = 'translationally_frameshifted' OR cvterm.name = 'minus_1_translationally_frameshifted' OR cvterm.name = 'plus_1_translationally_frameshifted' OR cvterm.name = 'dicistronic' OR cvterm.name = 'bound_by_protein' OR cvterm.name = 'bound_by_nucleic_acid' OR cvterm.name = 'floxed' OR cvterm.name = 'FRT_flanked' OR cvterm.name = 'protein_coding' OR cvterm.name = 'non_protein_coding' OR cvterm.name = 'gene_to_gene_feature' OR cvterm.name = 'gene_array_member' OR cvterm.name = 'regulated' OR cvterm.name = 'epigenetically_modified' OR cvterm.name = 'encodes_alternately_spliced_transcripts' OR cvterm.name = 'encodes_alternate_transcription_start_sites' OR cvterm.name = 'intein_containing' OR cvterm.name = 'miRNA_encoding' OR cvterm.name = 'rRNA_encoding' OR cvterm.name = 'scRNA_encoding' OR cvterm.name = 'snoRNA_encoding' OR cvterm.name = 'snRNA_encoding' OR cvterm.name = 'SRP_RNA_encoding' OR cvterm.name = 'stRNA_encoding' OR cvterm.name = 'tmRNA_encoding' OR cvterm.name = 'tRNA_encoding' OR cvterm.name = 'gRNA_encoding' OR cvterm.name = 'C_D_box_snoRNA_encoding' OR cvterm.name = 'H_ACA_box_snoRNA_encoding' OR cvterm.name = 'overlapping' OR cvterm.name = 'inside_intron' OR cvterm.name = 'five_prime_three_prime_overlap' OR cvterm.name = 'five_prime_five_prime_overlap' OR cvterm.name = 'three_prime_three_prime_overlap' OR cvterm.name = 'three_prime_five_prime_overlap' OR cvterm.name = 'antisense' OR cvterm.name = 'inside_intron_antiparallel' OR cvterm.name = 'inside_intron_parallel' OR cvterm.name = 'operon_member' OR cvterm.name = 'gene_cassette_member' OR cvterm.name = 'gene_subarray_member' OR cvterm.name = 'member_of_regulon' OR cvterm.name = 'cassette_array_member' OR cvterm.name = 'transcriptionally_regulated' OR cvterm.name = 'post_translationally_regulated' OR cvterm.name = 'translationally_regulated' OR cvterm.name = 'imprinted' OR cvterm.name = 'transcriptionally_constitutive' OR cvterm.name = 'transcriptionally_induced' OR cvterm.name = 'transcriptionally_repressed' OR cvterm.name = 'autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'silenced' OR cvterm.name = 'silenced_by_DNA_modification' OR cvterm.name = 'silenced_by_RNA_interference' OR cvterm.name = 'silenced_by_histone_modification' OR cvterm.name = 'silenced_by_DNA_methylation' OR cvterm.name = 'silenced_by_histone_methylation' OR cvterm.name = 'silenced_by_histone_deacetylation' OR cvterm.name = 'negatively_autoregulated' OR cvterm.name = 'positively_autoregulated' OR cvterm.name = 'post_translationally_regulated_by_protein_stability' OR cvterm.name = 'post_translationally_regulated_by_protein_modification' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'imprinted' OR cvterm.name = 'allelically_excluded' OR cvterm.name = 'rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted' OR cvterm.name = 'paternally_imprinted' OR cvterm.name = 'encodes_1_polypeptide' OR cvterm.name = 'encodes_greater_than_1_polypeptide' OR cvterm.name = 'encodes_disjoint_polypeptides' OR cvterm.name = 'encodes_overlapping_peptides' OR cvterm.name = 'encodes_different_polypeptides_different_stop' OR cvterm.name = 'encodes_overlapping_peptides_different_start' OR cvterm.name = 'encodes_overlapping_polypeptides_different_start_and_stop' OR cvterm.name = 'homologous' OR cvterm.name = 'syntenic' OR cvterm.name = 'orthologous' OR cvterm.name = 'paralogous' OR cvterm.name = 'fragmentary' OR cvterm.name = 'predicted' OR cvterm.name = 'validated' OR cvterm.name = 'invalidated' OR cvterm.name = 'independently_known' OR cvterm.name = 'consensus' OR cvterm.name = 'low_complexity' OR cvterm.name = 'supported_by_sequence_similarity' OR cvterm.name = 'orphan' OR cvterm.name = 'predicted_by_ab_initio_computation' OR cvterm.name = 'supported_by_domain_match' OR cvterm.name = 'supported_by_EST_or_cDNA' OR cvterm.name = 'experimentally_determined' OR cvterm.name = 'invalidated_by_chimeric_cDNA' OR cvterm.name = 'invalidated_by_genomic_contamination' OR cvterm.name = 'invalidated_by_genomic_polyA_primed_cDNA' OR cvterm.name = 'invalidated_by_partial_processing' OR cvterm.name = 'single' OR cvterm.name = 'double' OR cvterm.name = 'forward' OR cvterm.name = 'reverse' OR cvterm.name = 'ribozymic' OR cvterm.name = 'feature_attribute';
14872c14798
<   WHERE cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'gene_group_regulatory_region';
---
>   WHERE cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'gene_group_regulatory_region';
14879c14805
< --- *** erted and is being propagated by the clo ***
---
> --- *** erted and is being propogated by the clo ***
15532c15458
<   WHERE cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_region';
---
>   WHERE cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_region';
15946c15872
<   WHERE cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'point_centromere' OR cvterm.name = 'regional_centromere' OR cvterm.name = 'chromosome_part';
---
>   WHERE cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'chromosome_part';
15962c15888
<   WHERE cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'processed_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'tasiRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'tasiRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'transcription_regulatory_region' OR cvterm.name = 'translation_regulatory_region' OR cvterm.name = 'recombination_regulatory_region' OR cvterm.name = 'replication_regulatory_region' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'intronic_regulatory_region' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'ISRE' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'attenuator' OR cvterm.name = 'gene_member_region';
---
>   WHERE cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'attenuator' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'gene_member_region';
15978c15904
<   WHERE cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'kozak_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'codon' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'cryptic_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding_exon_coding_region' OR cvterm.name = 'transcript_region';
---
>   WHERE cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'codon' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding exon_coding_region' OR cvterm.name = 'transcript_region';
15994c15920
<   WHERE cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'kozak_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'codon' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'mature_transcript_region';
---
>   WHERE cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'codon' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'mature_transcript_region';
16010c15936
<   WHERE cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'cryptic_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'primary_transcript_region';
---
>   WHERE cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'primary_transcript_region';
16026c15952
<   WHERE cvterm.name = 'riboswitch' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'kozak_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'codon' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'mRNA_region';
---
>   WHERE cvterm.name = 'riboswitch' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'codon' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'mRNA_region';
16042c15968
<   WHERE cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'UTR_region';
---
>   WHERE cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'UTR_region';
16076c16002
<   WHERE cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'peptide_localization_signal' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'nuclear_localization_signal' OR cvterm.name = 'endosomal_localization_signal' OR cvterm.name = 'lysosomal_localization_signal' OR cvterm.name = 'nuclear_export_signal' OR cvterm.name = 'nuclear_rim_localization_signal' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_region';
---
>   WHERE cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_region';
16092c16018
<   WHERE cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'repeat_component';
---
>   WHERE cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'repeat_component';
16123c16049
<   WHERE cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'pseudogenic_gene_segment' OR cvterm.name = 'gene_component_region';
---
>   WHERE cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'gene_component_region';
16200c16126
<   WHERE cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'codon' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'CDS_region';
---
>   WHERE cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'CDS_region';
16216c16142
<   WHERE cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding_exon_coding_region' OR cvterm.name = 'exon_region';
---
>   WHERE cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding exon_coding_region' OR cvterm.name = 'exon_region';
16571c16497
<   WHERE cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'edited_transcript';
---
>   WHERE cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_transcript';
17004,17007c16930
< --- *** A transgene is a gene that has been tran ***
< --- *** sferred naturally or by any of a number  ***
< --- *** of genetic engineering techniques from o ***
< --- *** ne organism to another.                  ***
---
> --- *** A gene that is transgenic.               ***
17067c16990
<   WHERE cvterm.name = 'fragmentary' OR cvterm.name = 'predicted' OR cvterm.name = 'validated' OR cvterm.name = 'invalidated' OR cvterm.name = 'independently_known' OR cvterm.name = 'consensus' OR cvterm.name = 'low_complexity' OR cvterm.name = 'whole_genome_sequence_status' OR cvterm.name = 'supported_by_sequence_similarity' OR cvterm.name = 'orphan' OR cvterm.name = 'predicted_by_ab_initio_computation' OR cvterm.name = 'supported_by_domain_match' OR cvterm.name = 'supported_by_EST_or_cDNA' OR cvterm.name = 'experimentally_determined' OR cvterm.name = 'invalidated_by_chimeric_cDNA' OR cvterm.name = 'invalidated_by_genomic_contamination' OR cvterm.name = 'invalidated_by_genomic_polyA_primed_cDNA' OR cvterm.name = 'invalidated_by_partial_processing' OR cvterm.name = 'standard_draft' OR cvterm.name = 'high_quality_draft' OR cvterm.name = 'improved_high_quality_draft' OR cvterm.name = 'annotation_directed_improved_draft' OR cvterm.name = 'noncontiguous_finished' OR cvterm.name = 'finished_genome' OR cvterm.name = 'status';
---
>   WHERE cvterm.name = 'fragmentary' OR cvterm.name = 'predicted' OR cvterm.name = 'validated' OR cvterm.name = 'invalidated' OR cvterm.name = 'independently_known' OR cvterm.name = 'consensus' OR cvterm.name = 'low_complexity' OR cvterm.name = 'supported_by_sequence_similarity' OR cvterm.name = 'orphan' OR cvterm.name = 'predicted_by_ab_initio_computation' OR cvterm.name = 'supported_by_domain_match' OR cvterm.name = 'supported_by_EST_or_cDNA' OR cvterm.name = 'experimentally_determined' OR cvterm.name = 'invalidated_by_chimeric_cDNA' OR cvterm.name = 'invalidated_by_genomic_contamination' OR cvterm.name = 'invalidated_by_genomic_polyA_primed_cDNA' OR cvterm.name = 'invalidated_by_partial_processing' OR cvterm.name = 'status';
17255c17178
<   WHERE cvterm.name = 'edited_mRNA';
---
>   WHERE cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA';
18635,18640d18557
< --- *** A sequence variant that does not affect  ***
< --- *** protein function. Silent mutations may o ***
< --- *** ccur in genic ( CDS, UTR, intron etc) an ***
< --- *** d intergenic regions. Silent mutations m ***
< --- *** ay have affects on processes such as spl ***
< --- *** icing and regulation.                    ***
18656,18658c18573,18574
< --- *** A binding site that, in the molecule, in ***
< --- *** teracts selectively and non-covalently w ***
< --- *** ith antibodies, B cells or T cells.      ***
---
> --- *** A region of a macromolecule that is reco ***
> --- *** gnized by the immune system.             ***
18685c18601,18616
<   WHERE cvterm.name = 'copy_number_gain' OR cvterm.name = 'copy_number_loss' OR cvterm.name = 'copy_number_variation';
---
>   WHERE cvterm.name = 'copy_number_variation';
> 
> --- ************************************************
> --- *** relation: sequence_variant_affecting_copy_number ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_affecting_copy_number AS
>   SELECT
>     feature_id AS sequence_variant_affecting_copy_number_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_affecting_copy_number';
18734c18665
<   WHERE cvterm.name = 'polymorphic_sequence_variant' OR cvterm.name = 'allele';
---
>   WHERE cvterm.name = 'allele';
18787c18718
<   WHERE cvterm.name = 'kinetoplast' OR cvterm.name = 'reference_genome' OR cvterm.name = 'variant_genome' OR cvterm.name = 'chromosomally_aberrant_genome' OR cvterm.name = 'genome';
---
>   WHERE cvterm.name = 'genome';
18790c18721
< --- *** relation: so_genotype ***
---
> --- *** relation: genotype ***
18798c18729
< CREATE VIEW so_genotype AS
---
> CREATE VIEW genotype AS
18800c18731
<     feature_id AS so_genotype_id,
---
>     feature_id AS genotype_id,
18804c18735
<   WHERE cvterm.name = 'genotype';
---
>   WHERE cvterm.name = 'diplotype' OR cvterm.name = 'genotype';
18910,18913c18841,18844
< --- *** A de-branched intron which mimics the st ***
< --- *** ructure of pre-miRNA and enters the miRN ***
< --- *** A processing pathway without Drosha medi ***
< --- *** ated cleavage.                           ***
---
> --- *** A debranched intron which mimics the str ***
> --- *** ucture of pre-miRNA and enters the miRNA ***
> --- ***  processing pathway without Drosha media ***
> --- *** ted cleavage.                            ***
18979c18910
<   WHERE cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'nested_transposon' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'p_element' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'mobile_genetic_element';
---
>   WHERE cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'RR_tract' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'mobile_genetic_element';
18996c18927
<   WHERE cvterm.name = 'natural_transposable_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'extrachromosomal_mobile_genetic_element';
---
>   WHERE cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'extrachromosomal_mobile_genetic_element';
19013c18944
<   WHERE cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'nested_transposon' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'p_element' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'integrated_mobile_genetic_element';
---
>   WHERE cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'RR_tract' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'integrated_mobile_genetic_element';
19090,19092c19021,19022
< --- *** A nuclear pseudogene of either coding or ***
< --- ***  non-coding mitochondria derived sequenc ***
< --- *** e.                                       ***
---
> --- *** A nuclear pseudogene of a mitochndrial g ***
> --- *** ene.                                     ***
19217,19218d19146
< --- *** A portion of a transposon, interrupted b ***
< --- *** y the insertion of another element.      ***
19245c19173
<   WHERE cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'ISRE' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'transcriptional_cis_regulatory_region';
---
>   WHERE cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'transcriptional_cis_regulatory_region';
19301c19229
<   WHERE cvterm.name = 'deletion' OR cvterm.name = 'translocation' OR cvterm.name = 'insertion' OR cvterm.name = 'copy_number_variation' OR cvterm.name = 'UPD' OR cvterm.name = 'structural_alteration' OR cvterm.name = 'substitution' OR cvterm.name = 'indel' OR cvterm.name = 'inversion' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'duplication' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'copy_number_gain' OR cvterm.name = 'copy_number_loss' OR cvterm.name = 'maternal_uniparental_disomy' OR cvterm.name = 'paternal_uniparental_disomy' OR cvterm.name = 'complex_structural_alteration' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'SNV' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'point_mutation' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'sequence_alteration';
---
>   WHERE cvterm.name = 'deletion' OR cvterm.name = 'translocation' OR cvterm.name = 'insertion' OR cvterm.name = 'substitution' OR cvterm.name = 'uncharacterised_change_in_nucleotide_sequence' OR cvterm.name = 'indel' OR cvterm.name = 'inversion' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'point_mutation' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'partially_characterised_change_in_DNA_sequence' OR cvterm.name = 'nucleotide_deletion' OR cvterm.name = 'nucleotide_insertion' OR cvterm.name = 'nucleotide_duplication' OR cvterm.name = 'sequence_alteration';
19319c19247
<   WHERE cvterm.name = 'functional_variant' OR cvterm.name = 'structural_variant' OR cvterm.name = 'loss_of_heterozygosity' OR cvterm.name = 'transcript_function_variant' OR cvterm.name = 'translational_product_function_variant' OR cvterm.name = 'level_of_transcript_variant' OR cvterm.name = 'transcript_processing_variant' OR cvterm.name = 'transcript_stability_variant' OR cvterm.name = 'transcription_variant' OR cvterm.name = 'decreased_transcript_level_variant' OR cvterm.name = 'increased_transcript_level_variant' OR cvterm.name = 'editing_variant' OR cvterm.name = 'polyadenylation_variant' OR cvterm.name = 'increased_polyadenylation_variant' OR cvterm.name = 'decreased_polyadenylation_variant' OR cvterm.name = 'decreased_transcript_stability_variant' OR cvterm.name = 'increased_transcript_stability_variant' OR cvterm.name = 'rate_of_transcription_variant' OR cvterm.name = 'increased_transcription_rate_variant' OR cvterm.name = 'decreased_transcription_rate_variant' OR cvterm.name = 'translational_product_level_variant' OR cvterm.name = 'polypeptide_function_variant' OR cvterm.name = 'decreased_translational_product_level' OR cvterm.name = 'increased_translational_product_level' OR cvterm.name = 'polypeptide_gain_of_function_variant' OR cvterm.name = 'polypeptide_localization_variant' OR cvterm.name = 'polypeptide_loss_of_function_variant' OR cvterm.name = 'polypeptide_post_translational_processing_variant' OR cvterm.name = 'inactive_ligand_binding_site' OR cvterm.name = 'polypeptide_partial_loss_of_function' OR cvterm.name = 'inactive_catalytic_site' OR cvterm.name = 'silent_mutation' OR cvterm.name = 'copy_number_change' OR cvterm.name = 'gene_variant' OR cvterm.name = 'regulatory_region_variant' OR cvterm.name = 'intergenic_variant' OR cvterm.name = 'upstream_gene_variant' OR cvterm.name = 'downstream_gene_variant' OR cvterm.name = 'gene_fusion' OR cvterm.name = 'splicing_variant' OR cvterm.name = 'transcript_variant' OR cvterm.name = 'translational_product_structure_variant' OR cvterm.name = 'cryptic_splice_site_variant' OR cvterm.name = 'exon_loss' OR cvterm.name = 'intron_gain' OR cvterm.name = 'splice_region_variant' OR cvterm.name = 'cryptic_splice_acceptor' OR cvterm.name = 'cryptic_splice_donor' OR cvterm.name = 'complex_change_in_transcript' OR cvterm.name = 'transcript_secondary_structure_variant' OR cvterm.name = 'nc_transcript_variant' OR cvterm.name = 'NMD_transcript_variant' OR cvterm.name = 'UTR_variant' OR cvterm.name = 'intron_variant' OR cvterm.name = 'exon_variant' OR cvterm.name = 'compensatory_transcript_secondary_structure_variant' OR cvterm.name = 'mature_miRNA_variant' OR cvterm.name = '5_prime_UTR_variant' OR cvterm.name = '3_prime_UTR_variant' OR cvterm.name = 'splice_site_variant' OR cvterm.name = 'splice_acceptor_variant' OR cvterm.name = 'splice_donor_variant' OR cvterm.name = 'splice_donor_5th_base_variant' OR cvterm.name = 'coding_sequence_variant' OR cvterm.name = 'non_coding_exon_variant' OR cvterm.name = 'codon_variant' OR cvterm.name = 'frameshift_variant' OR cvterm.name = 'inframe_variant' OR cvterm.name = 'initiator_codon_change' OR cvterm.name = 'non_synonymous_codon' OR cvterm.name = 'synonymous_codon' OR cvterm.name = 'terminal_codon_variant' OR cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'frame_restoring_variant' OR cvterm.name = 'minus_1_frameshift_variant' OR cvterm.name = 'minus_2_frameshift_variant' OR cvterm.name = 'plus_1_frameshift_variant' OR cvterm.name = 'plus_2_frameshift variant' OR cvterm.name = 'inframe_codon_gain' OR cvterm.name = 'inframe_codon_loss' OR cvterm.name = '3D_polypeptide_structure_variant' OR cvterm.name = 'complex_change_of_translational_product_variant' OR cvterm.name = 'polypeptide_sequence_variant' OR cvterm.name = 'complex_3D_structural_variant' OR cvterm.name = 'conformational_change_variant' OR cvterm.name = 'amino_acid_deletion' OR cvterm.name = 'amino_acid_insertion' OR cvterm.name = 'amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide' OR cvterm.name = 'polypeptide_fusion' OR cvterm.name = 'polypeptide_truncation' OR cvterm.name = 'conservative_amino_acid_substitution' OR cvterm.name = 'non_conservative_amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide_C_terminal' OR cvterm.name = 'elongated_polypeptide_N_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal' OR cvterm.name = 'TF_binding_site_variant' OR cvterm.name = '5KB_upstream_variant' OR cvterm.name = '2KB_upstream_variant' OR cvterm.name = '5KB_downstream_variant' OR cvterm.name = '500B_downstream_variant' OR cvterm.name = 'sequence_variant';
---
>   WHERE cvterm.name = 'copy_number_variation' OR cvterm.name = 'allele' OR cvterm.name = 'haplotype' OR cvterm.name = 'polymorphic_sequence_variant' OR cvterm.name = 'genotype' OR cvterm.name = 'diplotype' OR cvterm.name = 'sequence_variant';
19432c19360
<   WHERE cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_motif';
---
>   WHERE cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_motif';
19678c19606
<   WHERE cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'contig_collection' OR cvterm.name = 'polypeptide_sequencing_information';
---
>   WHERE cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'polypeptide_sequencing_information';
19732c19660
<   WHERE cvterm.name = 'contig_collection' OR cvterm.name = 'sequence_conflict';
---
>   WHERE cvterm.name = 'sequence_conflict';
19770c19698
<   WHERE cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'post_translationally_modified_region';
---
>   WHERE cvterm.name = 'post_translationally_modified_region';
19776,19778c19704,19705
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with metal ions.              ***
---
> --- *** Residue is part of a binding site for a  ***
> --- *** metal ion.                               ***
19794,19796c19721,19722
< --- *** A binding site that, in the protein mole ***
< --- *** cule, interacts selectively and non-cova ***
< --- *** lently with polypeptide residues.        ***
---
> --- *** Residues involved in protein-protein int ***
> --- *** eractions.                               ***
19812,19814c19738,19739
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with calcium ions.            ***
---
> --- *** Residue involved in contact with calcium ***
> --- *** .                                        ***
19830,19832c19755
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with cobalt ions.             ***
---
> --- *** Residue involved in contact with cobalt. ***
19848,19850c19771
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with copper ions.             ***
---
> --- *** Residue involved in contact with copper. ***
19866,19868c19787
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with iron ions.               ***
---
> --- *** Residue involved in contact with iron.   ***
19884,19886c19803,19804
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with magnesium ions.          ***
---
> --- *** Residue involved in contact with magnesi ***
> --- *** um.                                      ***
19902,19904c19820,19821
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with manganese ions.          ***
---
> --- *** Residue involved in contact with mangane ***
> --- *** se.                                      ***
19920,19922c19837,19838
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with molybdenum ions.         ***
---
> --- *** Residue involved in contact with molybde ***
> --- *** num.                                     ***
19938,19940c19854
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with nickel ions.             ***
---
> --- *** Residue involved in contact with nickel. ***
19956,19958c19870,19871
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with tungsten ions.           ***
---
> --- *** Residue involved in contact with tungste ***
> --- *** n.                                       ***
19974,19976c19887
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with zinc ions.               ***
---
> --- *** Residue involved in contact with zinc.   ***
20746,20750c20657,20661
< --- *** Gamma turns, defined for 3 residues i,(  ***
< --- *** i+1),( i+2) if a hydrogen bond exists be ***
< --- *** tween residues i and i+2 and the phi and ***
< --- ***  psi angles of residue i+1 fall within 4 ***
< --- *** 0 degrees.                               ***
---
> --- *** Gamma turns, defined for 3 residues i, i ***
> --- *** +1, i+2 if a hydrogen bond exists betwee ***
> --- *** n residues i and i+2 and the phi and psi ***
> --- ***  angles of residue i+1 fall within 40 de ***
> --- *** grees.                                   ***
21646c21557
< --- *** relation: morpholino_backbone ***
---
> --- *** relation: morpholino ***
21657c21568
< CREATE VIEW morpholino_backbone AS
---
> CREATE VIEW morpholino AS
21659c21570
<     feature_id AS morpholino_backbone_id,
---
>     feature_id AS morpholino_id,
21663c21574
<   WHERE cvterm.name = 'morpholino_backbone';
---
>   WHERE cvterm.name = 'morpholino';
22032c21943
<   WHERE cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'RNA_polymerase_promoter';
---
>   WHERE cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'RNA_polymerase_promoter';
22252c22163
<   WHERE cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding_exon_coding_region' OR cvterm.name = 'coding_region_of_exon';
---
>   WHERE cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding exon_coding_region' OR cvterm.name = 'coding_region_of_exon';
22291,22293d22201
< --- *** An insertion that derives from another o ***
< --- *** rganism, via the use of recombinant DNA  ***
< --- *** technology.                              ***
22597c22505
<   WHERE cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'replicon';
---
>   WHERE cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'replicon';
22615c22523
<   WHERE cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'base';
---
>   WHERE cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'modified_base_site' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'base';
22633c22541
<   WHERE cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'arginine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'amino_acid';
---
>   WHERE cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'argenine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'amino_acid';
23014c22922
<   WHERE cvterm.name = 'kinetoplast' OR cvterm.name = 'genome' OR cvterm.name = 'contig_collection' OR cvterm.name = 'peptide_collection' OR cvterm.name = 'variant_collection' OR cvterm.name = 'kinetoplast' OR cvterm.name = 'reference_genome' OR cvterm.name = 'variant_genome' OR cvterm.name = 'chromosomally_aberrant_genome' OR cvterm.name = 'chromosome_variation' OR cvterm.name = 'allele' OR cvterm.name = 'haplotype' OR cvterm.name = 'genotype' OR cvterm.name = 'diplotype' OR cvterm.name = 'assortment_derived_variation' OR cvterm.name = 'chromosome_number_variation' OR cvterm.name = 'chromosome_structure_variation' OR cvterm.name = 'assortment_derived_duplication' OR cvterm.name = 'assortment_derived_deficiency_plus_duplication' OR cvterm.name = 'assortment_derived_deficiency' OR cvterm.name = 'assortment_derived_aneuploid' OR cvterm.name = 'aneuploid' OR cvterm.name = 'polyploid' OR cvterm.name = 'hyperploid' OR cvterm.name = 'hypoploid' OR cvterm.name = 'autopolyploid' OR cvterm.name = 'allopolyploid' OR cvterm.name = 'free_chromosome_arm' OR cvterm.name = 'chromosomal_transposition' OR cvterm.name = 'aneuploid_chromosome' OR cvterm.name = 'intrachromosomal_mutation' OR cvterm.name = 'interchromosomal_mutation' OR cvterm.name = 'chromosomal_duplication' OR cvterm.name = 'compound_chromosome' OR cvterm.name = 'autosynaptic_chromosome' OR cvterm.name = 'complex_chromosomal_mutation' OR cvterm.name = 'uncharacterised_chromosomal_mutation' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'dexstrosynaptic_chromosome' OR cvterm.name = 'laevosynaptic_chromosome' OR cvterm.name = 'partially_characterised_chromosomal_mutation' OR cvterm.name = 'polymorphic_sequence_variant' OR cvterm.name = 'sequence_collection';
---
>   WHERE cvterm.name = 'kinetoplast' OR cvterm.name = 'genome' OR cvterm.name = 'contig_collection' OR cvterm.name = 'sequence_collection';
23066c22974
<   WHERE cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'rRNA_gene' OR cvterm.name = 'piRNA_gene' OR cvterm.name = 'RNase_P_RNA_gene' OR cvterm.name = 'RNase_MRP_RNA_gene' OR cvterm.name = 'lincRNA_gene' OR cvterm.name = 'telomerase_RNA_gene' OR cvterm.name = 'ncRNA_gene';
---
>   WHERE cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'ncRNA_gene';
25071,25074c24979,24980
< --- *** A binding site that, in the nucleotide m ***
< --- *** olecule, interacts selectively and non-c ***
< --- *** ovalently with polypeptide residues of a ***
< --- ***  histone.                                ***
---
> --- *** A region of a DNA molecule that is bound ***
> --- ***  by a histone.                           ***
25524c25430
<   WHERE cvterm.name = 'reagent' OR cvterm.name = 'engineered_region' OR cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'ASPE_primer' OR cvterm.name = 'dCAPS_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'biomaterial_region';
---
>   WHERE cvterm.name = 'reagent' OR cvterm.name = 'engineered_region' OR cvterm.name = 'PCR_product' OR cvterm.name = 'clone' OR cvterm.name = 'rescue_region' OR cvterm.name = 'oligo' OR cvterm.name = 'clone_insert' OR cvterm.name = 'cloned_region' OR cvterm.name = 'databank_entry' OR cvterm.name = 'RAPD' OR cvterm.name = 'genomic_clone' OR cvterm.name = 'cDNA_clone' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'validated_cDNA_clone' OR cvterm.name = 'invalidated_cDNA_clone' OR cvterm.name = 'three_prime_RACE_clone' OR cvterm.name = 'chimeric_cDNA_clone' OR cvterm.name = 'genomically_contaminated_cDNA_clone' OR cvterm.name = 'polyA_primed_cDNA_clone' OR cvterm.name = 'partially_processed_cDNA_clone' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'aptamer' OR cvterm.name = 'probe' OR cvterm.name = 'tag' OR cvterm.name = 'ss_oligo' OR cvterm.name = 'ds_oligo' OR cvterm.name = 'DNAzyme' OR cvterm.name = 'synthetic_oligo' OR cvterm.name = 'DNA_aptamer' OR cvterm.name = 'RNA_aptamer' OR cvterm.name = 'microarray_oligo' OR cvterm.name = 'SAGE_tag' OR cvterm.name = 'STS' OR cvterm.name = 'EST' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'five_prime_EST' OR cvterm.name = 'three_prime_EST' OR cvterm.name = 'UST' OR cvterm.name = 'RST' OR cvterm.name = 'three_prime_UST' OR cvterm.name = 'five_prime_UST' OR cvterm.name = 'three_prime_RST' OR cvterm.name = 'five_prime_RST' OR cvterm.name = 'primer' OR cvterm.name = 'sequencing_primer' OR cvterm.name = 'forward_primer' OR cvterm.name = 'reverse_primer' OR cvterm.name = 'RNAi_reagent' OR cvterm.name = 'DNA_constraint_sequence' OR cvterm.name = 'morpholino_oligo' OR cvterm.name = 'PNA_oligo' OR cvterm.name = 'LNA_oligo' OR cvterm.name = 'TNA_oligo' OR cvterm.name = 'GNA_oligo' OR cvterm.name = 'R_GNA_oligo' OR cvterm.name = 'S_GNA_oligo' OR cvterm.name = 'cloned_cDNA_insert' OR cvterm.name = 'cloned_genomic_insert' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'BAC_cloned_genomic_insert' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'engineered_rescue_region' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'engineered_foreign_region' OR cvterm.name = 'engineered_tag' OR cvterm.name = 'engineered_insert' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'biomaterial_region';
25543c25449
<   WHERE cvterm.name = 'match_part' OR cvterm.name = 'assembly_component' OR cvterm.name = 'conserved_region' OR cvterm.name = 'match' OR cvterm.name = 'remark' OR cvterm.name = 'reading_frame' OR cvterm.name = 'consensus_region' OR cvterm.name = 'low_complexity_region' OR cvterm.name = 'assembly' OR cvterm.name = 'transcribed_fragment' OR cvterm.name = 'transcribed_cluster' OR cvterm.name = 'high_identity_region' OR cvterm.name = 'mathematically_defined_repeat' OR cvterm.name = 'experimentally_defined_binding_region' OR cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'paired_end_fragment' OR cvterm.name = 'read_pair' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'YAC_end' OR cvterm.name = 'clone_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'RR_tract' OR cvterm.name = 'homologous_region' OR cvterm.name = 'centromere_DNA_Element_I' OR cvterm.name = 'centromere_DNA_Element_II' OR cvterm.name = 'centromere_DNA_Element_III' OR cvterm.name = 'X_element' OR cvterm.name = 'U_box' OR cvterm.name = 'regional_centromere_central_core' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'nucleotide_match' OR cvterm.name = 'protein_match' OR cvterm.name = 'expressed_sequence_match' OR cvterm.name = 'cross_genome_match' OR cvterm.name = 'translated_nucleotide_match' OR cvterm.name = 'primer_match' OR cvterm.name = 'EST_match' OR cvterm.name = 'cDNA_match' OR cvterm.name = 'UST_match' OR cvterm.name = 'RST_match' OR cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'assembly_error_correction' OR cvterm.name = 'base_call_error_correction' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'contig_collection' OR cvterm.name = 'ORF' OR cvterm.name = 'blocked_reading_frame' OR cvterm.name = 'mini_gene' OR cvterm.name = 'rescue_mini_gene' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'sequence_assembly' OR cvterm.name = 'fragment_assembly' OR cvterm.name = 'supercontig' OR cvterm.name = 'contig' OR cvterm.name = 'tiling_path' OR cvterm.name = 'virtual_sequence' OR cvterm.name = 'golden_path' OR cvterm.name = 'ultracontig' OR cvterm.name = 'expressed_sequence_assembly' OR cvterm.name = 'fingerprint_map' OR cvterm.name = 'STS_map' OR cvterm.name = 'RH_map' OR cvterm.name = 'unigene_cluster' OR cvterm.name = 'CHiP_seq_region' OR cvterm.name = 'experimental_feature';
---
>   WHERE cvterm.name = 'match_part' OR cvterm.name = 'assembly_component' OR cvterm.name = 'conserved_region' OR cvterm.name = 'match' OR cvterm.name = 'remark' OR cvterm.name = 'reading_frame' OR cvterm.name = 'QTL' OR cvterm.name = 'consensus_region' OR cvterm.name = 'low_complexity_region' OR cvterm.name = 'assembly' OR cvterm.name = 'transcribed_fragment' OR cvterm.name = 'transcribed_cluster' OR cvterm.name = 'read_pair' OR cvterm.name = 'contig' OR cvterm.name = 'read' OR cvterm.name = 'restriction_fragment' OR cvterm.name = 'golden_path_fragment' OR cvterm.name = 'tiling_path_fragment' OR cvterm.name = 'gap' OR cvterm.name = 'sonicate_fragment' OR cvterm.name = 'contig_read' OR cvterm.name = 'BAC_end' OR cvterm.name = 'dye_terminator_read' OR cvterm.name = 'pyrosequenced_read' OR cvterm.name = 'ligation_based_read' OR cvterm.name = 'polymerase_synthesis_read' OR cvterm.name = 'PAC_end' OR cvterm.name = 'RFLP_fragment' OR cvterm.name = 'tiling_path_clone' OR cvterm.name = 'coding_conserved_region' OR cvterm.name = 'nc_conserved_region' OR cvterm.name = 'homologous_region' OR cvterm.name = 'syntenic_region' OR cvterm.name = 'paralogous_region' OR cvterm.name = 'orthologous_region' OR cvterm.name = 'nucleotide_match' OR cvterm.name = 'protein_match' OR cvterm.name = 'expressed_sequence_match' OR cvterm.name = 'cross_genome_match' OR cvterm.name = 'translated_nucleotide_match' OR cvterm.name = 'primer_match' OR cvterm.name = 'EST_match' OR cvterm.name = 'cDNA_match' OR cvterm.name = 'UST_match' OR cvterm.name = 'RST_match' OR cvterm.name = 'sequence_difference' OR cvterm.name = 'experimental_result_region' OR cvterm.name = 'polypeptide_sequencing_information' OR cvterm.name = 'possible_base_call_error' OR cvterm.name = 'possible_assembly_error' OR cvterm.name = 'overlapping_feature_set' OR cvterm.name = 'no_output' OR cvterm.name = 'overlapping_EST_set' OR cvterm.name = 'non_adjacent_residues' OR cvterm.name = 'non_terminal_residue' OR cvterm.name = 'sequence_conflict' OR cvterm.name = 'sequence_uncertainty' OR cvterm.name = 'ORF' OR cvterm.name = 'blocked_reading_frame' OR cvterm.name = 'mini_gene' OR cvterm.name = 'rescue_mini_gene' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'sequence_assembly' OR cvterm.name = 'fragment_assembly' OR cvterm.name = 'supercontig' OR cvterm.name = 'contig' OR cvterm.name = 'tiling_path' OR cvterm.name = 'virtual_sequence' OR cvterm.name = 'golden_path' OR cvterm.name = 'ultracontig' OR cvterm.name = 'expressed_sequence_assembly' OR cvterm.name = 'fingerprint_map' OR cvterm.name = 'STS_map' OR cvterm.name = 'RH_map' OR cvterm.name = 'unigene_cluster' OR cvterm.name = 'experimental_feature';
25560c25466
<   WHERE cvterm.name = 'sequence_secondary_structure' OR cvterm.name = 'linkage_group' OR cvterm.name = 'polypeptide' OR cvterm.name = 'deletion' OR cvterm.name = 'origin_of_replication' OR cvterm.name = 'recombination_feature' OR cvterm.name = 'CpG_island' OR cvterm.name = 'pseudogene' OR cvterm.name = 'binding_site' OR cvterm.name = 'pseudogenic_region' OR cvterm.name = 'cap' OR cvterm.name = 'intergenic_region' OR cvterm.name = 'oligo_U_tail' OR cvterm.name = 'polyA_sequence' OR cvterm.name = 'repeat_region' OR cvterm.name = 'insertion' OR cvterm.name = 'gene' OR cvterm.name = 'repeat_unit' OR cvterm.name = 'QTL' OR cvterm.name = 'chromosome_part' OR cvterm.name = 'gene_member_region' OR cvterm.name = 'transcript_region' OR cvterm.name = 'polypeptide_region' OR cvterm.name = 'gene_component_region' OR cvterm.name = 'mobile_genetic_element' OR cvterm.name = 'replicon' OR cvterm.name = 'base' OR cvterm.name = 'amino_acid' OR cvterm.name = 'genetic_marker' OR cvterm.name = 'sequence_motif' OR cvterm.name = 'restriction_enzyme_recognition_site' OR cvterm.name = 'restriction_enzyme_single_strand_overhang' OR cvterm.name = 'epigenetically_modified_region' OR cvterm.name = 'open_chromatin_region' OR cvterm.name = 'gene_group' OR cvterm.name = 'substitution' OR cvterm.name = 'inversion' OR cvterm.name = 'retron' OR cvterm.name = 'G_quartet' OR cvterm.name = 'base_pair' OR cvterm.name = 'RNA_sequence_secondary_structure' OR cvterm.name = 'DNA_sequence_secondary_structure' OR cvterm.name = 'pseudoknot' OR cvterm.name = 'WC_base_pair' OR cvterm.name = 'sugar_edge_base_pair' OR cvterm.name = 'Hoogsteen_base_pair' OR cvterm.name = 'reverse_Hoogsteen_base_pair' OR cvterm.name = 'wobble_base_pair' OR cvterm.name = 'stem_loop' OR cvterm.name = 'tetraloop' OR cvterm.name = 'i_motif' OR cvterm.name = 'recoding_pseudoknot' OR cvterm.name = 'H_pseudoknot' OR cvterm.name = 'D_loop' OR cvterm.name = 'ARS' OR cvterm.name = 'oriT' OR cvterm.name = 'amplification_origin' OR cvterm.name = 'oriV' OR cvterm.name = 'oriC' OR cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'recombination_signal_sequence' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'processed_pseudogene' OR cvterm.name = 'non_processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'duplicated_pseudogene' OR cvterm.name = 'unitary_pseudogene' OR cvterm.name = 'protein_binding_site' OR cvterm.name = 'epitope' OR cvterm.name = 'nucleotide_binding_site' OR cvterm.name = 'metal_binding_site' OR cvterm.name = 'ligand_binding_site' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'nucleotide_to_protein_binding_site' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'X_element_combinatorial_repeat' OR cvterm.name = 'Y_prime_element' OR cvterm.name = 'telomeric_repeat' OR cvterm.name = 'nested_repeat' OR cvterm.name = 'centromeric_repeat' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'nested_tandem_repeat' OR cvterm.name = 'regional_centromere_inner_repeat_region' OR cvterm.name = 'regional_centromere_outer_repeat_region' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'duplication' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_with_non_canonical_start_codon' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'rRNA_gene' OR cvterm.name = 'piRNA_gene' OR cvterm.name = 'RNase_P_RNA_gene' OR cvterm.name = 'RNase_MRP_RNA_gene' OR cvterm.name = 'lincRNA_gene' OR cvterm.name = 'telomerase_RNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'gene_with_start_codon_CUG' OR cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'point_centromere' OR cvterm.name = 'regional_centromere' OR cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'processed_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'tasiRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'tasiRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'transcription_regulatory_region' OR cvterm.name = 'translation_regulatory_region' OR cvterm.name = 'recombination_regulatory_region' OR cvterm.name = 'replication_regulatory_region' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'intronic_regulatory_region' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'ISRE' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'attenuator' OR cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'kozak_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'codon' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'cryptic_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding_exon_coding_region' OR cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'peptide_localization_signal' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'nuclear_localization_signal' OR cvterm.name = 'endosomal_localization_signal' OR cvterm.name = 'lysosomal_localization_signal' OR cvterm.name = 'nuclear_export_signal' OR cvterm.name = 'nuclear_rim_localization_signal' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'pseudogenic_gene_segment' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'nested_transposon' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'p_element' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'targeting_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'arginine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'heritable_phenotypic_marker' OR cvterm.name = 'DArT_marker' OR cvterm.name = 'nucleotide_motif' OR cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'retinoic_acid_responsive_element' OR cvterm.name = 'promoter_element' OR cvterm.name = 'DCE_SI' OR cvterm.name = 'DCE_SII' OR cvterm.name = 'DCE_SIII' OR cvterm.name = 'minus_12_signal' OR cvterm.name = 'minus_24_signal' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'core_promoter_element' OR cvterm.name = 'regulatory_promoter_element' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'blunt_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'sticky_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'modified_base' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'histone_modification' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'operon' OR cvterm.name = 'mating_type_region' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'SNV' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'point_mutation' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'biological_region';
---
>   WHERE cvterm.name = 'sequence_secondary_structure' OR cvterm.name = 'linkage_group' OR cvterm.name = 'polypeptide' OR cvterm.name = 'deletion' OR cvterm.name = 'origin_of_replication' OR cvterm.name = 'recombination_feature' OR cvterm.name = 'CpG_island' OR cvterm.name = 'binding_site' OR cvterm.name = 'pseudogenic_region' OR cvterm.name = 'cap' OR cvterm.name = 'intergenic_region' OR cvterm.name = 'oligo_U_tail' OR cvterm.name = 'polyA_sequence' OR cvterm.name = 'insertion' OR cvterm.name = 'gene' OR cvterm.name = 'nucleotide_motif' OR cvterm.name = 'chromosome_part' OR cvterm.name = 'gene_member_region' OR cvterm.name = 'transcript_region' OR cvterm.name = 'polypeptide_region' OR cvterm.name = 'gene_component_region' OR cvterm.name = 'mobile_genetic_element' OR cvterm.name = 'replicon' OR cvterm.name = 'base' OR cvterm.name = 'amino_acid' OR cvterm.name = 'gene_group' OR cvterm.name = 'substitution' OR cvterm.name = 'inversion' OR cvterm.name = 'retron' OR cvterm.name = 'G_quartet' OR cvterm.name = 'base_pair' OR cvterm.name = 'RNA_sequence_secondary_structure' OR cvterm.name = 'DNA_sequence_secondary_structure' OR cvterm.name = 'pseudoknot' OR cvterm.name = 'WC_base_pair' OR cvterm.name = 'sugar_edge_base_pair' OR cvterm.name = 'Hoogsteen_base_pair' OR cvterm.name = 'reverse_Hoogsteen_base_pair' OR cvterm.name = 'wobble_base_pair' OR cvterm.name = 'stem_loop' OR cvterm.name = 'tetraloop' OR cvterm.name = 'i_motif' OR cvterm.name = 'recoding_pseudoknot' OR cvterm.name = 'H_pseudoknot' OR cvterm.name = 'D_loop' OR cvterm.name = 'ARS' OR cvterm.name = 'oriT' OR cvterm.name = 'amplification_origin' OR cvterm.name = 'oriV' OR cvterm.name = 'oriC' OR cvterm.name = 'recombination_hotspot' OR cvterm.name = 'haplotype_block' OR cvterm.name = 'sequence_rearrangement_feature' OR cvterm.name = 'iDNA' OR cvterm.name = 'specific_recombination_site' OR cvterm.name = 'chromosome_breakage_sequence' OR cvterm.name = 'internal_eliminated_sequence' OR cvterm.name = 'macronucleus_destined_segment' OR cvterm.name = 'recombination_feature_of_rearranged_gene' OR cvterm.name = 'site_specific_recombination_target_region' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_feature' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_spacer' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment' OR cvterm.name = 'vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster' OR cvterm.name = 'vertebrate_immune_system_gene_recombination_signal_feature' OR cvterm.name = 'D_gene' OR cvterm.name = 'V_gene' OR cvterm.name = 'J_gene' OR cvterm.name = 'C_gene' OR cvterm.name = 'D_J_C_cluster' OR cvterm.name = 'J_C_cluster' OR cvterm.name = 'J_cluster' OR cvterm.name = 'V_cluster' OR cvterm.name = 'V_J_cluster' OR cvterm.name = 'V_J_C_cluster' OR cvterm.name = 'C_cluster' OR cvterm.name = 'D_cluster' OR cvterm.name = 'D_J_cluster' OR cvterm.name = 'three_prime_D_spacer' OR cvterm.name = 'five_prime_D_spacer' OR cvterm.name = 'J_spacer' OR cvterm.name = 'V_spacer' OR cvterm.name = 'VD_gene' OR cvterm.name = 'DJ_gene' OR cvterm.name = 'VDJ_gene' OR cvterm.name = 'VJ_gene' OR cvterm.name = 'DJ_J_cluster' OR cvterm.name = 'VDJ_J_C_cluster' OR cvterm.name = 'VDJ_J_cluster' OR cvterm.name = 'VJ_C_cluster' OR cvterm.name = 'VJ_J_C_cluster' OR cvterm.name = 'VJ_J_cluster' OR cvterm.name = 'D_DJ_C_cluster' OR cvterm.name = 'D_DJ_cluster' OR cvterm.name = 'D_DJ_J_C_cluster' OR cvterm.name = 'D_DJ_J_cluster' OR cvterm.name = 'V_DJ_cluster' OR cvterm.name = 'V_DJ_J_cluster' OR cvterm.name = 'V_VDJ_C_cluster' OR cvterm.name = 'V_VDJ_cluster' OR cvterm.name = 'V_VDJ_J_cluster' OR cvterm.name = 'V_VJ_C_cluster' OR cvterm.name = 'V_VJ_cluster' OR cvterm.name = 'V_VJ_J_cluster' OR cvterm.name = 'V_D_DJ_C_cluster' OR cvterm.name = 'V_D_DJ_cluster' OR cvterm.name = 'V_D_DJ_J_C_cluster' OR cvterm.name = 'V_D_DJ_J_cluster' OR cvterm.name = 'V_D_J_C_cluster' OR cvterm.name = 'V_D_J_cluster' OR cvterm.name = 'DJ_C_cluster' OR cvterm.name = 'DJ_J_C_cluster' OR cvterm.name = 'VDJ_C_cluster' OR cvterm.name = 'V_DJ_C_cluster' OR cvterm.name = 'V_DJ_J_C_cluster' OR cvterm.name = 'V_VDJ_J_C_cluster' OR cvterm.name = 'V_VJ_J_C_cluster' OR cvterm.name = 'J_gene_recombination_feature' OR cvterm.name = 'D_gene_recombination_feature' OR cvterm.name = 'V_gene_recombination_feature' OR cvterm.name = 'heptamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'nonamer_of_recombination_feature_of_vertebrate_immune_system_gene' OR cvterm.name = 'five_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_recombination_signal_sequence' OR cvterm.name = 'three_prime_D_heptamer' OR cvterm.name = 'five_prime_D_heptamer' OR cvterm.name = 'J_heptamer' OR cvterm.name = 'V_heptamer' OR cvterm.name = 'three_prime_D_nonamer' OR cvterm.name = 'five_prime_D_nonamer' OR cvterm.name = 'J_nonamer' OR cvterm.name = 'V_nonamer' OR cvterm.name = 'integration_excision_site' OR cvterm.name = 'resolution_site' OR cvterm.name = 'inversion_site' OR cvterm.name = 'inversion_site_part' OR cvterm.name = 'attI_site' OR cvterm.name = 'attP_site' OR cvterm.name = 'attB_site' OR cvterm.name = 'attL_site' OR cvterm.name = 'attR_site' OR cvterm.name = 'attC_site' OR cvterm.name = 'attCtn_site' OR cvterm.name = 'loxP_site' OR cvterm.name = 'dif_site' OR cvterm.name = 'FRT_site' OR cvterm.name = 'IRLinv_site' OR cvterm.name = 'IRRinv_site' OR cvterm.name = 'protein_binding_site' OR cvterm.name = 'miRNA_target_site' OR cvterm.name = 'epitope' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'pseudogene' OR cvterm.name = 'decayed_exon' OR cvterm.name = 'pseudogenic_exon' OR cvterm.name = 'pseudogenic_transcript' OR cvterm.name = 'pseudogenic_rRNA' OR cvterm.name = 'pseudogenic_tRNA' OR cvterm.name = 'processed_pseudogene' OR cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'transgenic_insertion' OR cvterm.name = 'nuclear_gene' OR cvterm.name = 'mt_gene' OR cvterm.name = 'plastid_gene' OR cvterm.name = 'nucleomorph_gene' OR cvterm.name = 'plasmid_gene' OR cvterm.name = 'proviral_gene' OR cvterm.name = 'transposable_element_gene' OR cvterm.name = 'silenced_gene' OR cvterm.name = 'engineered_gene' OR cvterm.name = 'foreign_gene' OR cvterm.name = 'fusion_gene' OR cvterm.name = 'recombinationally_rearranged_gene' OR cvterm.name = 'gene_with_trans_spliced_transcript' OR cvterm.name = 'gene_with_polycistronic_transcript' OR cvterm.name = 'rescue_gene' OR cvterm.name = 'post_translationally_regulated_gene' OR cvterm.name = 'negatively_autoregulated_gene' OR cvterm.name = 'positively_autoregulated_gene' OR cvterm.name = 'translationally_regulated_gene' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'transgene' OR cvterm.name = 'predicted_gene' OR cvterm.name = 'protein_coding_gene' OR cvterm.name = 'retrogene' OR cvterm.name = 'ncRNA_gene' OR cvterm.name = 'cryptic_gene' OR cvterm.name = 'gene_cassette' OR cvterm.name = 'kinetoplast_gene' OR cvterm.name = 'maxicircle_gene' OR cvterm.name = 'minicircle_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'apicoplast_gene' OR cvterm.name = 'ct_gene' OR cvterm.name = 'chromoplast_gene' OR cvterm.name = 'cyanelle_gene' OR cvterm.name = 'leucoplast_gene' OR cvterm.name = 'proplastid_gene' OR cvterm.name = 'endogenous_retroviral_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'gene_silenced_by_DNA_modification' OR cvterm.name = 'gene_silenced_by_RNA_interference' OR cvterm.name = 'gene_silenced_by_histone_modification' OR cvterm.name = 'gene_silenced_by_DNA_methylation' OR cvterm.name = 'gene_silenced_by_histone_methylation' OR cvterm.name = 'gene_silenced_by_histone_deacetylation' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_foreign_gene' OR cvterm.name = 'engineered_foreign_transposable_element_gene' OR cvterm.name = 'engineered_fusion_gene' OR cvterm.name = 'recombinationally_inverted_gene' OR cvterm.name = 'recombinationally_rearranged_vertebrate_immune_system_gene' OR cvterm.name = 'gene_with_dicistronic_transcript' OR cvterm.name = 'gene_with_dicistronic_primary_transcript' OR cvterm.name = 'gene_with_dicistronic_mRNA' OR cvterm.name = 'wild_type_rescue_gene' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'floxed_gene' OR cvterm.name = 'gene_with_polyadenylated_mRNA' OR cvterm.name = 'gene_with_mRNA_with_frameshift' OR cvterm.name = 'gene_with_edited_transcript' OR cvterm.name = 'gene_with_recoded_mRNA' OR cvterm.name = 'gene_with_stop_codon_read_through' OR cvterm.name = 'gene_with_mRNA_recoded_by_translational_bypass' OR cvterm.name = 'gene_with_transcript_with_translational_frameshift' OR cvterm.name = 'gene_with_stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'gene_with_stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'gRNA_gene' OR cvterm.name = 'miRNA_gene' OR cvterm.name = 'scRNA_gene' OR cvterm.name = 'snoRNA_gene' OR cvterm.name = 'snRNA_gene' OR cvterm.name = 'SRP_RNA_gene' OR cvterm.name = 'stRNA_gene' OR cvterm.name = 'tmRNA_gene' OR cvterm.name = 'tRNA_gene' OR cvterm.name = 'cryptogene' OR cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'chromosome_arm' OR cvterm.name = 'chromosome_band' OR cvterm.name = 'interband' OR cvterm.name = 'chromosomal_regulatory_element' OR cvterm.name = 'chromosomal_structural_element' OR cvterm.name = 'introgressed_chromosome_region' OR cvterm.name = 'matrix_attachment_site' OR cvterm.name = 'centromere' OR cvterm.name = 'telomere' OR cvterm.name = 'transcript' OR cvterm.name = 'regulatory_region' OR cvterm.name = 'polycistronic_transcript' OR cvterm.name = 'transcript_with_translational_frameshift' OR cvterm.name = 'primary_transcript' OR cvterm.name = 'mature_transcript' OR cvterm.name = 'transcript_bound_by_nucleic_acid' OR cvterm.name = 'transcript_bound_by_protein' OR cvterm.name = 'enzymatic_RNA' OR cvterm.name = 'trans_spliced_transcript' OR cvterm.name = 'monocistronic_transcript' OR cvterm.name = 'aberrant_processed_transcript' OR cvterm.name = 'edited_transcript' OR cvterm.name = 'alternatively_spliced_transcript' OR cvterm.name = 'dicistronic_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'protein_coding_primary_transcript' OR cvterm.name = 'nc_primary_transcript' OR cvterm.name = 'polycistronic_primary_transcript' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'mini_exon_donor_RNA' OR cvterm.name = 'antisense_primary_transcript' OR cvterm.name = 'capped_primary_transcript' OR cvterm.name = 'pre_edited_mRNA' OR cvterm.name = 'scRNA_primary_transcript' OR cvterm.name = 'rRNA_primary_transcript' OR cvterm.name = 'tRNA_primary_transcript' OR cvterm.name = 'snRNA_primary_transcript' OR cvterm.name = 'snoRNA_primary_transcript' OR cvterm.name = 'tmRNA_primary_transcript' OR cvterm.name = 'SRP_RNA_primary_transcript' OR cvterm.name = 'miRNA_primary_transcript' OR cvterm.name = 'rRNA_small_subunit_primary_transcript' OR cvterm.name = 'rRNA_large_subunit_primary_transcript' OR cvterm.name = 'alanine_tRNA_primary_transcript' OR cvterm.name = 'arginine_tRNA_primary_transcript' OR cvterm.name = 'asparagine_tRNA_primary_transcript' OR cvterm.name = 'aspartic_acid_tRNA_primary_transcript' OR cvterm.name = 'cysteine_tRNA_primary_transcript' OR cvterm.name = 'glutamic_acid_tRNA_primary_transcript' OR cvterm.name = 'glutamine_tRNA_primary_transcript' OR cvterm.name = 'glycine_tRNA_primary_transcript' OR cvterm.name = 'histidine_tRNA_primary_transcript' OR cvterm.name = 'isoleucine_tRNA_primary_transcript' OR cvterm.name = 'leucine_tRNA_primary_transcript' OR cvterm.name = 'lysine_tRNA_primary_transcript' OR cvterm.name = 'methionine_tRNA_primary_transcript' OR cvterm.name = 'phenylalanine_tRNA_primary_transcript' OR cvterm.name = 'proline_tRNA_primary_transcript' OR cvterm.name = 'serine_tRNA_primary_transcript' OR cvterm.name = 'threonine_tRNA_primary_transcript' OR cvterm.name = 'tryptophan_tRNA_primary_transcript' OR cvterm.name = 'tyrosine_tRNA_primary_transcript' OR cvterm.name = 'valine_tRNA_primary_transcript' OR cvterm.name = 'pyrrolysine_tRNA_primary_transcript' OR cvterm.name = 'selenocysteine_tRNA_primary_transcript' OR cvterm.name = 'methylation_guide_snoRNA_primary_transcript' OR cvterm.name = 'rRNA_cleavage_snoRNA_primary_transcript' OR cvterm.name = 'C_D_box_snoRNA_primary_transcript' OR cvterm.name = 'H_ACA_box_snoRNA_primary_transcript' OR cvterm.name = 'U14_snoRNA_primary_transcript' OR cvterm.name = 'stRNA_primary_transcript' OR cvterm.name = 'dicistronic_primary_transcript' OR cvterm.name = 'mRNA' OR cvterm.name = 'ncRNA' OR cvterm.name = 'mRNA_with_frameshift' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'polycistronic_mRNA' OR cvterm.name = 'exemplar_mRNA' OR cvterm.name = 'capped_mRNA' OR cvterm.name = 'polyadenylated_mRNA' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'consensus_mRNA' OR cvterm.name = 'recoded_mRNA' OR cvterm.name = 'mRNA_with_minus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_1_frameshift' OR cvterm.name = 'mRNA_with_plus_2_frameshift' OR cvterm.name = 'mRNA_with_minus_2_frameshift' OR cvterm.name = 'dicistronic_mRNA' OR cvterm.name = 'mRNA_recoded_by_translational_bypass' OR cvterm.name = 'mRNA_recoded_by_codon_redefinition' OR cvterm.name = 'scRNA' OR cvterm.name = 'rRNA' OR cvterm.name = 'tRNA' OR cvterm.name = 'snRNA' OR cvterm.name = 'snoRNA' OR cvterm.name = 'small_regulatory_ncRNA' OR cvterm.name = 'RNase_MRP_RNA' OR cvterm.name = 'RNase_P_RNA' OR cvterm.name = 'telomerase_RNA' OR cvterm.name = 'vault_RNA' OR cvterm.name = 'Y_RNA' OR cvterm.name = 'rasiRNA' OR cvterm.name = 'SRP_RNA' OR cvterm.name = 'guide_RNA' OR cvterm.name = 'antisense_RNA' OR cvterm.name = 'siRNA' OR cvterm.name = 'stRNA' OR cvterm.name = 'class_II_RNA' OR cvterm.name = 'class_I_RNA' OR cvterm.name = 'piRNA' OR cvterm.name = 'lincRNA' OR cvterm.name = 'rRNA_cleavage_RNA' OR cvterm.name = 'small_subunit_rRNA' OR cvterm.name = 'large_subunit_rRNA' OR cvterm.name = 'rRNA_18S' OR cvterm.name = 'rRNA_16S' OR cvterm.name = 'rRNA_5_8S' OR cvterm.name = 'rRNA_5S' OR cvterm.name = 'rRNA_28S' OR cvterm.name = 'rRNA_23S' OR cvterm.name = 'rRNA_25S' OR cvterm.name = 'rRNA_21S' OR cvterm.name = 'alanyl_tRNA' OR cvterm.name = 'asparaginyl_tRNA' OR cvterm.name = 'aspartyl_tRNA' OR cvterm.name = 'cysteinyl_tRNA' OR cvterm.name = 'glutaminyl_tRNA' OR cvterm.name = 'glutamyl_tRNA' OR cvterm.name = 'glycyl_tRNA' OR cvterm.name = 'histidyl_tRNA' OR cvterm.name = 'isoleucyl_tRNA' OR cvterm.name = 'leucyl_tRNA' OR cvterm.name = 'lysyl_tRNA' OR cvterm.name = 'methionyl_tRNA' OR cvterm.name = 'phenylalanyl_tRNA' OR cvterm.name = 'prolyl_tRNA' OR cvterm.name = 'seryl_tRNA' OR cvterm.name = 'threonyl_tRNA' OR cvterm.name = 'tryptophanyl_tRNA' OR cvterm.name = 'tyrosyl_tRNA' OR cvterm.name = 'valyl_tRNA' OR cvterm.name = 'pyrrolysyl_tRNA' OR cvterm.name = 'arginyl_tRNA' OR cvterm.name = 'selenocysteinyl_tRNA' OR cvterm.name = 'U1_snRNA' OR cvterm.name = 'U2_snRNA' OR cvterm.name = 'U4_snRNA' OR cvterm.name = 'U4atac_snRNA' OR cvterm.name = 'U5_snRNA' OR cvterm.name = 'U6_snRNA' OR cvterm.name = 'U6atac_snRNA' OR cvterm.name = 'U11_snRNA' OR cvterm.name = 'U12_snRNA' OR cvterm.name = 'C_D_box_snoRNA' OR cvterm.name = 'H_ACA_box_snoRNA' OR cvterm.name = 'U14_snoRNA' OR cvterm.name = 'U3_snoRNA' OR cvterm.name = 'methylation_guide_snoRNA' OR cvterm.name = 'pseudouridylation_guide_snoRNA' OR cvterm.name = 'miRNA' OR cvterm.name = 'RNA_6S' OR cvterm.name = 'CsrB_RsmB_RNA' OR cvterm.name = 'DsrA_RNA' OR cvterm.name = 'OxyS_RNA' OR cvterm.name = 'RprA_RNA' OR cvterm.name = 'RRE_RNA' OR cvterm.name = 'spot_42_RNA' OR cvterm.name = 'tmRNA' OR cvterm.name = 'GcvB_RNA' OR cvterm.name = 'MicF_RNA' OR cvterm.name = 'ribozyme' OR cvterm.name = 'trans_spliced_mRNA' OR cvterm.name = 'monocistronic_primary_transcript' OR cvterm.name = 'monocistronic_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'edited_mRNA' OR cvterm.name = 'edited_transcript_by_A_to_I_substitution' OR cvterm.name = 'attenuator' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'exon' OR cvterm.name = 'edited_transcript_feature' OR cvterm.name = 'mature_transcript_region' OR cvterm.name = 'primary_transcript_region' OR cvterm.name = 'exon_region' OR cvterm.name = 'anchor_binding_site' OR cvterm.name = 'coding_exon' OR cvterm.name = 'noncoding_exon' OR cvterm.name = 'interior_exon' OR cvterm.name = 'exon_of_single_exon_gene' OR cvterm.name = 'interior_coding_exon' OR cvterm.name = 'five_prime_coding_exon' OR cvterm.name = 'three_prime_coding_exon' OR cvterm.name = 'three_prime_noncoding_exon' OR cvterm.name = 'five_prime_noncoding_exon' OR cvterm.name = 'pre_edited_region' OR cvterm.name = 'editing_block' OR cvterm.name = 'editing_domain' OR cvterm.name = 'unedited_region' OR cvterm.name = 'mRNA_region' OR cvterm.name = 'tmRNA_region' OR cvterm.name = 'guide_RNA_region' OR cvterm.name = 'tRNA_region' OR cvterm.name = 'riboswitch' OR cvterm.name = 'UTR' OR cvterm.name = 'CDS' OR cvterm.name = 'codon' OR cvterm.name = 'five_prime_open_reading_frame' OR cvterm.name = 'UTR_region' OR cvterm.name = 'CDS_region' OR cvterm.name = 'translational_frameshift' OR cvterm.name = 'recoding_stimulatory_region' OR cvterm.name = 'five_prime_UTR' OR cvterm.name = 'three_prime_UTR' OR cvterm.name = 'internal_UTR' OR cvterm.name = 'untranslated_region_polycistronic_mRNA' OR cvterm.name = 'edited_CDS' OR cvterm.name = 'CDS_fragment' OR cvterm.name = 'CDS_independently_known' OR cvterm.name = 'CDS_predicted' OR cvterm.name = 'orphan_CDS' OR cvterm.name = 'CDS_supported_by_sequence_similarity_data' OR cvterm.name = 'CDS_supported_by_domain_match_data' OR cvterm.name = 'CDS_supported_by_EST_or_cDNA_data' OR cvterm.name = 'recoded_codon' OR cvterm.name = 'start_codon' OR cvterm.name = 'stop_codon' OR cvterm.name = 'stop_codon_read_through' OR cvterm.name = 'stop_codon_redefined_as_pyrrolysine' OR cvterm.name = 'stop_codon_redefined_as_selenocysteine' OR cvterm.name = 'non_canonical_start_codon' OR cvterm.name = 'four_bp_start_codon' OR cvterm.name = 'CTG_start_codon' OR cvterm.name = 'ribosome_entry_site' OR cvterm.name = 'polyA_site' OR cvterm.name = 'upstream_AUG_codon' OR cvterm.name = 'AU_rich_element' OR cvterm.name = 'Bruno_response_element' OR cvterm.name = 'iron_responsive_element' OR cvterm.name = 'internal_ribosome_entry_site' OR cvterm.name = 'Shine_Dalgarno_sequence' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'coding_start' OR cvterm.name = 'coding_end' OR cvterm.name = 'plus_1_translational_frameshift' OR cvterm.name = 'plus_2_translational_frameshift' OR cvterm.name = 'internal_Shine_Dalgarno_sequence' OR cvterm.name = 'SECIS_element' OR cvterm.name = 'three_prime_recoding_site' OR cvterm.name = 'five_prime_recoding_site' OR cvterm.name = 'stop_codon_signal' OR cvterm.name = 'three_prime_stem_loop_structure' OR cvterm.name = 'flanking_three_prime_quadruplet_recoding_signal' OR cvterm.name = 'three_prime_repeat_recoding_signal' OR cvterm.name = 'distant_three_prime_recoding_signal' OR cvterm.name = 'UAG_stop_codon_signal' OR cvterm.name = 'UAA_stop_codon_signal' OR cvterm.name = 'UGA_stop_codon_signal' OR cvterm.name = 'tmRNA_coding_piece' OR cvterm.name = 'tmRNA_acceptor_piece' OR cvterm.name = 'anchor_region' OR cvterm.name = 'template_region' OR cvterm.name = 'anticodon_loop' OR cvterm.name = 'anticodon' OR cvterm.name = 'CCA_tail' OR cvterm.name = 'DHU_loop' OR cvterm.name = 'T_loop' OR cvterm.name = 'splice_site' OR cvterm.name = 'intron' OR cvterm.name = 'clip' OR cvterm.name = 'TSS' OR cvterm.name = 'transcription_end_site' OR cvterm.name = 'spliced_leader_RNA' OR cvterm.name = 'rRNA_primary_transcript_region' OR cvterm.name = 'spliceosomal_intron_region' OR cvterm.name = 'intron_domain' OR cvterm.name = 'miRNA_primary_transcript_region' OR cvterm.name = 'outron' OR cvterm.name = 'cis_splice_site' OR cvterm.name = 'trans_splice_site' OR cvterm.name = 'five_prime_cis_splice_site' OR cvterm.name = 'three_prime_cis_splice_site' OR cvterm.name = 'recursive_splice_site' OR cvterm.name = 'canonical_five_prime_splice_site' OR cvterm.name = 'non_canonical_five_prime_splice_site' OR cvterm.name = 'canonical_three_prime_splice_site' OR cvterm.name = 'non_canonical_three_prime_splice_site' OR cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'five_prime_intron' OR cvterm.name = 'interior_intron' OR cvterm.name = 'three_prime_intron' OR cvterm.name = 'twintron' OR cvterm.name = 'UTR_intron' OR cvterm.name = 'autocatalytically_spliced_intron' OR cvterm.name = 'spliceosomal_intron' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'endonuclease_spliced_intron' OR cvterm.name = 'five_prime_UTR_intron' OR cvterm.name = 'three_prime_UTR_intron' OR cvterm.name = 'group_I_intron' OR cvterm.name = 'group_II_intron' OR cvterm.name = 'group_III_intron' OR cvterm.name = 'group_IIA_intron' OR cvterm.name = 'group_IIB_intron' OR cvterm.name = 'U2_intron' OR cvterm.name = 'U12_intron' OR cvterm.name = 'archaeal_intron' OR cvterm.name = 'tRNA_intron' OR cvterm.name = 'five_prime_clip' OR cvterm.name = 'three_prime_clip' OR cvterm.name = 'major_TSS' OR cvterm.name = 'minor_TSS' OR cvterm.name = 'transcribed_spacer_region' OR cvterm.name = 'internal_transcribed_spacer_region' OR cvterm.name = 'external_transcribed_spacer_region' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'branch_site' OR cvterm.name = 'polypyrimidine_tract' OR cvterm.name = 'internal_guide_sequence' OR cvterm.name = 'mirtron' OR cvterm.name = 'pre_miRNA' OR cvterm.name = 'miRNA_stem' OR cvterm.name = 'miRNA_loop' OR cvterm.name = 'miRNA_antiguide' OR cvterm.name = 'noncoding_region_of_exon' OR cvterm.name = 'coding_region_of_exon' OR cvterm.name = 'three_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_noncoding_region' OR cvterm.name = 'five_prime_coding_exon_coding_region' OR cvterm.name = 'three_prime_coding exon_coding_region' OR cvterm.name = 'mature_protein_region' OR cvterm.name = 'immature_peptide_region' OR cvterm.name = 'compositionally_biased_region_of_peptide' OR cvterm.name = 'polypeptide_structural_region' OR cvterm.name = 'polypeptide_variation_site' OR cvterm.name = 'cleaved_peptide_region' OR cvterm.name = 'hydrophobic_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_region' OR cvterm.name = 'active_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'membrane_structure' OR cvterm.name = 'extramembrane_polypeptide_region' OR cvterm.name = 'intramembrane_polypeptide_region' OR cvterm.name = 'polypeptide_secondary_structure' OR cvterm.name = 'polypeptide_structural_motif' OR cvterm.name = 'intrinsically_unstructured_polypeptide_region' OR cvterm.name = 'cytoplasmic_polypeptide_region' OR cvterm.name = 'non_cytoplasmic_polypeptide_region' OR cvterm.name = 'membrane_peptide_loop' OR cvterm.name = 'transmembrane_polypeptide_region' OR cvterm.name = 'asx_motif' OR cvterm.name = 'beta_bulge' OR cvterm.name = 'beta_bulge_loop' OR cvterm.name = 'beta_strand' OR cvterm.name = 'peptide_helix' OR cvterm.name = 'polypeptide_nest_motif' OR cvterm.name = 'schellmann_loop' OR cvterm.name = 'serine_threonine_motif' OR cvterm.name = 'serine_threonine_staple_motif' OR cvterm.name = 'polypeptide_turn_motif' OR cvterm.name = 'catmat_left_handed_three' OR cvterm.name = 'catmat_left_handed_four' OR cvterm.name = 'catmat_right_handed_three' OR cvterm.name = 'catmat_right_handed_four' OR cvterm.name = 'alpha_beta_motif' OR cvterm.name = 'peptide_coil' OR cvterm.name = 'beta_bulge_loop_five' OR cvterm.name = 'beta_bulge_loop_six' OR cvterm.name = 'antiparallel_beta_strand' OR cvterm.name = 'parallel_beta_strand' OR cvterm.name = 'left_handed_peptide_helix' OR cvterm.name = 'right_handed_peptide_helix' OR cvterm.name = 'alpha_helix' OR cvterm.name = 'pi_helix' OR cvterm.name = 'three_ten_helix' OR cvterm.name = 'polypeptide_nest_left_right_motif' OR cvterm.name = 'polypeptide_nest_right_left_motif' OR cvterm.name = 'schellmann_loop_seven' OR cvterm.name = 'schellmann_loop_six' OR cvterm.name = 'asx_turn' OR cvterm.name = 'beta_turn' OR cvterm.name = 'gamma_turn' OR cvterm.name = 'serine_threonine_turn' OR cvterm.name = 'asx_turn_left_handed_type_one' OR cvterm.name = 'asx_turn_left_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_two' OR cvterm.name = 'asx_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_one' OR cvterm.name = 'beta_turn_left_handed_type_two' OR cvterm.name = 'beta_turn_right_handed_type_one' OR cvterm.name = 'beta_turn_right_handed_type_two' OR cvterm.name = 'beta_turn_type_six' OR cvterm.name = 'beta_turn_type_eight' OR cvterm.name = 'beta_turn_type_six_a' OR cvterm.name = 'beta_turn_type_six_b' OR cvterm.name = 'beta_turn_type_six_a_one' OR cvterm.name = 'beta_turn_type_six_a_two' OR cvterm.name = 'gamma_turn_classic' OR cvterm.name = 'gamma_turn_inverse' OR cvterm.name = 'st_turn_left_handed_type_one' OR cvterm.name = 'st_turn_left_handed_type_two' OR cvterm.name = 'st_turn_right_handed_type_one' OR cvterm.name = 'st_turn_right_handed_type_two' OR cvterm.name = 'coiled_coil' OR cvterm.name = 'helix_turn_helix' OR cvterm.name = 'natural_variant_site' OR cvterm.name = 'mutated_variant_site' OR cvterm.name = 'alternate_sequence_site' OR cvterm.name = 'signal_peptide' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'non_transcribed_region' OR cvterm.name = 'gene_fragment' OR cvterm.name = 'TSS_region' OR cvterm.name = 'gene_segment' OR cvterm.name = 'mobile_intron' OR cvterm.name = 'extrachromosomal_mobile_genetic_element' OR cvterm.name = 'integrated_mobile_genetic_element' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'transposable_element' OR cvterm.name = 'proviral_region' OR cvterm.name = 'integron' OR cvterm.name = 'genomic_island' OR cvterm.name = 'integrated_plasmid' OR cvterm.name = 'cointegrated_plasmid' OR cvterm.name = 'retrotransposon' OR cvterm.name = 'DNA_transposon' OR cvterm.name = 'foreign_transposable_element' OR cvterm.name = 'transgenic_transposable_element' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'engineered_transposable_element' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'LTR_retrotransposon' OR cvterm.name = 'non_LTR_retrotransposon' OR cvterm.name = 'RR_tract' OR cvterm.name = 'LINE_element' OR cvterm.name = 'SINE_element' OR cvterm.name = 'terminal_inverted_repeat_element' OR cvterm.name = 'foldback_element' OR cvterm.name = 'conjugative_transposon' OR cvterm.name = 'helitron' OR cvterm.name = 'MITE' OR cvterm.name = 'insertion_sequence' OR cvterm.name = 'polinton' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'engineered_foreign_transposable_element' OR cvterm.name = 'prophage' OR cvterm.name = 'pathogenic_island' OR cvterm.name = 'metabolic_island' OR cvterm.name = 'adaptive_island' OR cvterm.name = 'symbiosis_island' OR cvterm.name = 'cryptic_prophage' OR cvterm.name = 'defective_conjugative_transposon' OR cvterm.name = 'plasmid' OR cvterm.name = 'chromosome' OR cvterm.name = 'vector_replicon' OR cvterm.name = 'maxicircle' OR cvterm.name = 'minicircle' OR cvterm.name = 'viral_sequence' OR cvterm.name = 'engineered_plasmid' OR cvterm.name = 'episome' OR cvterm.name = 'natural_plasmid' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'gene_trap_construct' OR cvterm.name = 'promoter_trap_construct' OR cvterm.name = 'enhancer_trap_construct' OR cvterm.name = 'engineered_episome' OR cvterm.name = 'natural_transposable_element' OR cvterm.name = 'mitochondrial_chromosome' OR cvterm.name = 'chloroplast_chromosome' OR cvterm.name = 'chromoplast_chromosome' OR cvterm.name = 'cyanelle_chromosome' OR cvterm.name = 'leucoplast_chromosome' OR cvterm.name = 'macronuclear_chromosome' OR cvterm.name = 'micronuclear_chromosome' OR cvterm.name = 'nuclear_chromosome' OR cvterm.name = 'nucleomorphic_chromosome' OR cvterm.name = 'DNA_chromosome' OR cvterm.name = 'RNA_chromosome' OR cvterm.name = 'apicoplast_chromosome' OR cvterm.name = 'double_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_DNA_chromosome' OR cvterm.name = 'linear_double_stranded_DNA_chromosome' OR cvterm.name = 'circular_double_stranded_DNA_chromosome' OR cvterm.name = 'linear_single_stranded_DNA_chromosome' OR cvterm.name = 'circular_single_stranded_DNA_chromosome' OR cvterm.name = 'single_stranded_RNA_chromosome' OR cvterm.name = 'double_stranded_RNA_chromosome' OR cvterm.name = 'linear_single_stranded_RNA_chromosome' OR cvterm.name = 'circular_single_stranded_RNA_chromosome' OR cvterm.name = 'linear_double_stranded_RNA_chromosome' OR cvterm.name = 'circular_double_stranded_RNA_chromosome' OR cvterm.name = 'YAC' OR cvterm.name = 'BAC' OR cvterm.name = 'PAC' OR cvterm.name = 'cosmid' OR cvterm.name = 'phagemid' OR cvterm.name = 'fosmid' OR cvterm.name = 'lambda_vector' OR cvterm.name = 'plasmid_vector' OR cvterm.name = 'phage_sequence' OR cvterm.name = 'ds_RNA_viral_sequence' OR cvterm.name = 'ds_DNA_viral_sequence' OR cvterm.name = 'ss_RNA_viral_sequence' OR cvterm.name = 'negative_sense_ssRNA_viral_sequence' OR cvterm.name = 'positive_sense_ssRNA_viral_sequence' OR cvterm.name = 'ambisense_ssRNA_viral_sequence' OR cvterm.name = 'modified_RNA_base_feature' OR cvterm.name = 'modified_base_site' OR cvterm.name = 'inosine' OR cvterm.name = 'seven_methylguanine' OR cvterm.name = 'ribothymidine' OR cvterm.name = 'modified_adenosine' OR cvterm.name = 'modified_cytidine' OR cvterm.name = 'modified_guanosine' OR cvterm.name = 'modified_uridine' OR cvterm.name = 'modified_inosine' OR cvterm.name = 'methylinosine' OR cvterm.name = 'one_methylinosine' OR cvterm.name = 'one_two_prime_O_dimethylinosine' OR cvterm.name = 'two_prime_O_methylinosine' OR cvterm.name = 'one_methyladenosine' OR cvterm.name = 'two_methyladenosine' OR cvterm.name = 'N6_methyladenosine' OR cvterm.name = 'two_prime_O_methyladenosine' OR cvterm.name = 'two_methylthio_N6_methyladenosine' OR cvterm.name = 'N6_isopentenyladenosine' OR cvterm.name = 'two_methylthio_N6_isopentenyladenosine' OR cvterm.name = 'N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'two_methylthio_N6_cis_hydroxyisopentenyl_adenosine' OR cvterm.name = 'N6_glycinylcarbamoyladenosine' OR cvterm.name = 'N6_threonylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_threonyl_carbamoyladenosine' OR cvterm.name = 'N6_methyl_N6_threonylcarbamoyladenosine' OR cvterm.name = 'N6_hydroxynorvalylcarbamoyladenosine' OR cvterm.name = 'two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine' OR cvterm.name = 'two_prime_O_ribosyladenosine_phosphate' OR cvterm.name = 'N6_N6_dimethyladenosine' OR cvterm.name = 'N6_2_prime_O_dimethyladenosine' OR cvterm.name = 'N6_N6_2_prime_O_trimethyladenosine' OR cvterm.name = 'one_two_prime_O_dimethyladenosine' OR cvterm.name = 'N6_acetyladenosine' OR cvterm.name = 'three_methylcytidine' OR cvterm.name = 'five_methylcytidine' OR cvterm.name = 'two_prime_O_methylcytidine' OR cvterm.name = 'two_thiocytidine' OR cvterm.name = 'N4_acetylcytidine' OR cvterm.name = 'five_formylcytidine' OR cvterm.name = 'five_two_prime_O_dimethylcytidine' OR cvterm.name = 'N4_acetyl_2_prime_O_methylcytidine' OR cvterm.name = 'lysidine' OR cvterm.name = 'N4_methylcytidine' OR cvterm.name = 'N4_2_prime_O_dimethylcytidine' OR cvterm.name = 'five_hydroxymethylcytidine' OR cvterm.name = 'five_formyl_two_prime_O_methylcytidine' OR cvterm.name = 'N4_N4_2_prime_O_trimethylcytidine' OR cvterm.name = 'seven_deazaguanosine' OR cvterm.name = 'one_methylguanosine' OR cvterm.name = 'N2_methylguanosine' OR cvterm.name = 'seven_methylguanosine' OR cvterm.name = 'two_prime_O_methylguanosine' OR cvterm.name = 'N2_N2_dimethylguanosine' OR cvterm.name = 'N2_2_prime_O_dimethylguanosine' OR cvterm.name = 'N2_N2_2_prime_O_trimethylguanosine' OR cvterm.name = 'two_prime_O_ribosylguanosine_phosphate' OR cvterm.name = 'wybutosine' OR cvterm.name = 'peroxywybutosine' OR cvterm.name = 'hydroxywybutosine' OR cvterm.name = 'undermodified_hydroxywybutosine' OR cvterm.name = 'wyosine' OR cvterm.name = 'methylwyosine' OR cvterm.name = 'N2_7_dimethylguanosine' OR cvterm.name = 'N2_N2_7_trimethylguanosine' OR cvterm.name = 'one_two_prime_O_dimethylguanosine' OR cvterm.name = 'four_demethylwyosine' OR cvterm.name = 'isowyosine' OR cvterm.name = 'N2_7_2prirme_O_trimethylguanosine' OR cvterm.name = 'queuosine' OR cvterm.name = 'epoxyqueuosine' OR cvterm.name = 'galactosyl_queuosine' OR cvterm.name = 'mannosyl_queuosine' OR cvterm.name = 'seven_cyano_seven_deazaguanosine' OR cvterm.name = 'seven_aminomethyl_seven_deazaguanosine' OR cvterm.name = 'archaeosine' OR cvterm.name = 'dihydrouridine' OR cvterm.name = 'pseudouridine' OR cvterm.name = 'five_methyluridine' OR cvterm.name = 'two_prime_O_methyluridine' OR cvterm.name = 'five_two_prime_O_dimethyluridine' OR cvterm.name = 'one_methylpseudouridine' OR cvterm.name = 'two_prime_O_methylpseudouridine' OR cvterm.name = 'two_thiouridine' OR cvterm.name = 'four_thiouridine' OR cvterm.name = 'five_methyl_2_thiouridine' OR cvterm.name = 'two_thio_two_prime_O_methyluridine' OR cvterm.name = 'three_three_amino_three_carboxypropyl_uridine' OR cvterm.name = 'five_hydroxyuridine' OR cvterm.name = 'five_methoxyuridine' OR cvterm.name = 'uridine_five_oxyacetic_acid' OR cvterm.name = 'uridine_five_oxyacetic_acid_methyl_ester' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine' OR cvterm.name = 'five_carboxyhydroxymethyl_uridine_methyl_ester' OR cvterm.name = 'five_methoxycarbonylmethyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_methoxycarbonylmethyl_two_thiouridine' OR cvterm.name = 'five_aminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyluridine' OR cvterm.name = 'five_methylaminomethyl_two_thiouridine' OR cvterm.name = 'five_methylaminomethyl_two_selenouridine' OR cvterm.name = 'five_carbamoylmethyluridine' OR cvterm.name = 'five_carbamoylmethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'five_carboxymethylaminomethyl_two_thiouridine' OR cvterm.name = 'three_methyluridine' OR cvterm.name = 'one_methyl_three_three_amino_three_carboxypropyl_pseudouridine' OR cvterm.name = 'five_carboxymethyluridine' OR cvterm.name = 'three_two_prime_O_dimethyluridine' OR cvterm.name = 'five_methyldihydrouridine' OR cvterm.name = 'three_methylpseudouridine' OR cvterm.name = 'five_taurinomethyluridine' OR cvterm.name = 'five_taurinomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_uridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_thiouridine' OR cvterm.name = 'five_isopentenylaminomethyl_two_prime_O_methyluridine' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'catalytic_residue' OR cvterm.name = 'modified_amino_acid_feature' OR cvterm.name = 'alanine' OR cvterm.name = 'valine' OR cvterm.name = 'leucine' OR cvterm.name = 'isoleucine' OR cvterm.name = 'proline' OR cvterm.name = 'tryptophan' OR cvterm.name = 'phenylalanine' OR cvterm.name = 'methionine' OR cvterm.name = 'glycine' OR cvterm.name = 'serine' OR cvterm.name = 'threonine' OR cvterm.name = 'tyrosine' OR cvterm.name = 'cysteine' OR cvterm.name = 'glutamine' OR cvterm.name = 'asparagine' OR cvterm.name = 'lysine' OR cvterm.name = 'argenine' OR cvterm.name = 'histidine' OR cvterm.name = 'aspartic_acid' OR cvterm.name = 'glutamic_acid' OR cvterm.name = 'selenocysteine' OR cvterm.name = 'pyrrolysine' OR cvterm.name = 'modified_glycine' OR cvterm.name = 'modified_L_alanine' OR cvterm.name = 'modified_L_asparagine' OR cvterm.name = 'modified_L_aspartic_acid' OR cvterm.name = 'modified_L_cysteine' OR cvterm.name = 'modified_L_glutamic_acid' OR cvterm.name = 'modified_L_threonine' OR cvterm.name = 'modified_L_tryptophan' OR cvterm.name = 'modified_L_glutamine' OR cvterm.name = 'modified_L_methionine' OR cvterm.name = 'modified_L_isoleucine' OR cvterm.name = 'modified_L_phenylalanine' OR cvterm.name = 'modified_L_histidine' OR cvterm.name = 'modified_L_serine' OR cvterm.name = 'modified_L_lysine' OR cvterm.name = 'modified_L_leucine' OR cvterm.name = 'modified_L_selenocysteine' OR cvterm.name = 'modified_L_valine' OR cvterm.name = 'modified_L_proline' OR cvterm.name = 'modified_L_tyrosine' OR cvterm.name = 'modified_L_arginine' OR cvterm.name = 'operon' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'point_mutation' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'biological_region';
25578c25484
<   WHERE cvterm.name = 'flanking_region' OR cvterm.name = 'repeat_component' OR cvterm.name = 'transposable_element_flanking_region' OR cvterm.name = 'five_prime_flanking_region' OR cvterm.name = 'three_prime_flanking_region' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'transposon_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'topologically_defined_region';
---
>   WHERE cvterm.name = 'flanking_region' OR cvterm.name = 'repeat_region' OR cvterm.name = 'repeat_unit' OR cvterm.name = 'repeat_component' OR cvterm.name = 'transposable_element_flanking_region' OR cvterm.name = 'five_prime_flanking_region' OR cvterm.name = 'three_prime_flanking_region' OR cvterm.name = 'long_terminal_repeat' OR cvterm.name = 'engineered_foreign_repetitive_element' OR cvterm.name = 'inverted_repeat' OR cvterm.name = 'direct_repeat' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'dispersed_repeat' OR cvterm.name = 'tandem_repeat' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'five_prime_LTR' OR cvterm.name = 'three_prime_LTR' OR cvterm.name = 'solo_LTR' OR cvterm.name = 'terminal_inverted_repeat' OR cvterm.name = 'five_prime_terminal_inverted_repeat' OR cvterm.name = 'three_prime_terminal_inverted_repeat' OR cvterm.name = 'target_site_duplication' OR cvterm.name = 'CRISPR' OR cvterm.name = 'satellite_DNA' OR cvterm.name = 'microsatellite' OR cvterm.name = 'minisatellite' OR cvterm.name = 'dinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'trinucleotide_repeat_microsatellite_feature' OR cvterm.name = 'tetranucleotide_repeat_microsatellite_feature' OR cvterm.name = 'non_LTR_retrotransposon_polymeric_tract' OR cvterm.name = 'LTR_component' OR cvterm.name = 'repeat_fragment' OR cvterm.name = 'U5_LTR_region' OR cvterm.name = 'R_LTR_region' OR cvterm.name = 'U3_LTR_region' OR cvterm.name = 'three_prime_LTR_component' OR cvterm.name = 'five_prime_LTR_component' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'R_three_prime_LTR_region' OR cvterm.name = 'U3_three_prime_LTR_region' OR cvterm.name = 'U5_three_prime_LTR_region' OR cvterm.name = 'R_five_prime_LTR_region' OR cvterm.name = 'U5_five_prime_LTR_region' OR cvterm.name = 'U3_five_prime_LTR_region' OR cvterm.name = 'topologically_defined_region';
25716c25622
<   WHERE cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'SL3_acceptor_site' OR cvterm.name = 'SL4_acceptor_site' OR cvterm.name = 'SL5_acceptor_site' OR cvterm.name = 'SL6_acceptor_site' OR cvterm.name = 'SL7_acceptor_site' OR cvterm.name = 'SL8_acceptor_site' OR cvterm.name = 'SL9_acceptor_site' OR cvterm.name = 'SL10_accceptor_site' OR cvterm.name = 'SL11_acceptor_site' OR cvterm.name = 'SL12_acceptor_site' OR cvterm.name = 'trans_splice_site';
---
>   WHERE cvterm.name = 'trans_splice_acceptor_site' OR cvterm.name = 'trans_splice_donor_site' OR cvterm.name = 'SL1_acceptor_site' OR cvterm.name = 'SL2_acceptor_site' OR cvterm.name = 'trans_splice_site';
25860,25862c25766,25767
< --- *** A binding site that, in the molecule, in ***
< --- *** teracts selectively and non-covalently w ***
< --- *** ith DNA.                                 ***
---
> --- *** A region of a molecule that binds to DNA ***
> --- *** .                                        ***
25872c25777,25794
<   WHERE cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'DNA_binding_site';
---
>   WHERE cvterm.name = 'DNA_binding_site';
> 
> --- ************************************************
> --- *** relation: polya_junction ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** The boundary between the UTR and the pol ***
> --- *** yA sequence.                             ***
> --- ************************************************
> ---
> 
> CREATE VIEW polya_junction AS
>   SELECT
>     feature_id AS polya_junction_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'polyA_junction';
25892a25815,25829
> --- *** relation: sequence_variant_affecting_polyadenylation ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_affecting_polyadenylation AS
>   SELECT
>     feature_id AS sequence_variant_affecting_polyadenylation_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_affecting_polyadenylation';
> 
> --- ************************************************
25919,25921c25856,25858
< --- *** in an inactive form which may recombine  ***
< --- *** at a telomeric locus to form a functiona ***
< --- *** l copy.                                  ***
---
> --- *** in an innactive form which may recombine ***
> --- ***  at a telomeric locus to form a function ***
> --- *** al copy.                                 ***
26174c26111
< --- *** relation: arginine ***
---
> --- *** relation: argenine ***
26180c26117
< CREATE VIEW arginine AS
---
> CREATE VIEW argenine AS
26182c26119
<     feature_id AS arginine_id,
---
>     feature_id AS argenine_id,
26186c26123
<   WHERE cvterm.name = 'arginine';
---
>   WHERE cvterm.name = 'argenine';
26321,26324c26258,26259
< --- *** A binding site that, in an insulator reg ***
< --- *** ion of a nucleotide molecule, interacts  ***
< --- *** selectively and non-covalently with poly ***
< --- *** peptide residues.                        ***
---
> --- *** A protein_binding_site located within an ***
> --- ***  insulator.                              ***
26340,26343c26275,26276
< --- *** A binding site that, in the enhancer reg ***
< --- *** ion of a nucleotide molecule, interacts  ***
< --- *** selectively and non-covalently with poly ***
< --- *** peptide residues.                        ***
---
> --- *** A protein_binding_site located within an ***
> --- ***  enhancer.                               ***
26607c26540
<   WHERE cvterm.name = 'natural_plasmid';
---
>   WHERE cvterm.name = 'natural_transposable_element' OR cvterm.name = 'natural_plasmid';
26685c26618
< --- *** AC clone that may provide a highly speci ***
---
> --- *** AC clone that may provide anhighly speci ***
26732c26665
< --- *** relation: snv ***
---
> --- *** relation: regulatory_region ***
26735,26737c26668,26669
< --- *** SNVs are single nucleotide positions in  ***
< --- *** genomic DNA at which different sequence  ***
< --- *** alternatives exist.                      ***
---
> --- *** A DNA sequence that controls the express ***
> --- *** ion of a gene.                           ***
26741c26673
< CREATE VIEW snv AS
---
> CREATE VIEW regulatory_region AS
26743c26675
<     feature_id AS snv_id,
---
>     feature_id AS regulatory_region_id,
26747c26679
<   WHERE cvterm.name = 'SNP' OR cvterm.name = 'point_mutation' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'SNV';
---
>   WHERE cvterm.name = 'attenuator' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BRE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'MTE' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'regulatory_region';
26750c26682
< --- *** relation: x_element_combinatorial_repeat ***
---
> --- *** relation: u14_snorna_primary_transcript ***
26753,26756c26685,26689
< --- *** An X element combinatorial repeat is a r ***
< --- *** epeat region located between the X eleme ***
< --- *** nt and the telomere or adjacent Y' eleme ***
< --- *** nt.                                      ***
---
> --- *** The primary transcript of an evolutionar ***
> --- *** ily conserved eukaryotic low molecular w ***
> --- *** eight RNA capable of intermolecular hybr ***
> --- *** idization with both homologous and heter ***
> --- *** ologous 18S rRNA.                        ***
26760c26693
< CREATE VIEW x_element_combinatorial_repeat AS
---
> CREATE VIEW u14_snorna_primary_transcript AS
26762c26695
<     feature_id AS x_element_combinatorial_repeat_id,
---
>     feature_id AS u14_snorna_primary_transcript_id,
26766c26699
<   WHERE cvterm.name = 'X_element_combinatorial_repeat';
---
>   WHERE cvterm.name = 'U14_snoRNA_primary_transcript';
26769c26702
< --- *** relation: y_prime_element ***
---
> --- *** relation: methylation_guide_snorna ***
26772,26776c26705,26708
< --- *** A Y' element is a repeat region (SO:0000 ***
< --- *** 657) located adjacent to telomeric repea ***
< --- *** ts or X element combinatorial repeats, e ***
< --- *** ither as a single copy or tandem repeat  ***
< --- *** of two to four copies.                   ***
---
> --- *** A snoRNA that specifies the site of 2'-O ***
> --- *** -ribose methylation in an RNA molecule b ***
> --- *** y base pairing with a short sequence aro ***
> --- *** und the target residue.                  ***
26780c26712
< CREATE VIEW y_prime_element AS
---
> CREATE VIEW methylation_guide_snorna AS
26782c26714
<     feature_id AS y_prime_element_id,
---
>     feature_id AS methylation_guide_snorna_id,
26786c26718
<   WHERE cvterm.name = 'Y_prime_element';
---
>   WHERE cvterm.name = 'methylation_guide_snoRNA';
26789c26721
< --- *** relation: standard_draft ***
---
> --- *** relation: rrna_cleavage_rna ***
26792,26798c26724,26727
< --- *** The status of a whole genome sequence, w ***
< --- *** here the data is minimally filtered or u ***
< --- *** n-filtered, from any number of sequencin ***
< --- *** g platforms, and is assembled into conti ***
< --- *** gs. Genome sequence of this quality may  ***
< --- *** harbour regions of poor quality and can  ***
< --- *** be relatively incomplete.                ***
---
> --- *** An ncRNA that is part of a ribonucleopro ***
> --- *** tein that cleaves the primary pre-rRNA t ***
> --- *** ranscript in the process of producing ma ***
> --- *** ture rRNA molecules.                     ***
26802c26731
< CREATE VIEW standard_draft AS
---
> CREATE VIEW rrna_cleavage_rna AS
26804c26733
<     feature_id AS standard_draft_id,
---
>     feature_id AS rrna_cleavage_rna_id,
26808c26737
<   WHERE cvterm.name = 'standard_draft';
---
>   WHERE cvterm.name = 'rRNA_cleavage_RNA';
26811c26740
< --- *** relation: high_quality_draft ***
---
> --- *** relation: exon_of_single_exon_gene ***
26814,26816c26743
< --- *** The status of a whole genome sequence, w ***
< --- *** here overall coverage represents at leas ***
< --- *** t 90 percent of the genome.              ***
---
> --- *** An exon that is the only exon in a gene. ***
26820c26747
< CREATE VIEW high_quality_draft AS
---
> CREATE VIEW exon_of_single_exon_gene AS
26822c26749
<     feature_id AS high_quality_draft_id,
---
>     feature_id AS exon_of_single_exon_gene_id,
26826c26753
<   WHERE cvterm.name = 'high_quality_draft';
---
>   WHERE cvterm.name = 'exon_of_single_exon_gene';
26829c26756
< --- *** relation: improved_high_quality_draft ***
---
> --- *** relation: cassette_array_member ***
26832,26835d26758
< --- *** The status of a whole genome sequence, w ***
< --- *** here additional work has been performed, ***
< --- ***  using either manual or automated method ***
< --- *** s, such as gap resolution.               ***
26839c26762
< CREATE VIEW improved_high_quality_draft AS
---
> CREATE VIEW cassette_array_member AS
26841c26764
<     feature_id AS improved_high_quality_draft_id,
---
>     feature_id AS cassette_array_member_id,
26845c26768
<   WHERE cvterm.name = 'improved_high_quality_draft';
---
>   WHERE cvterm.name = 'cassette_array_member';
26848c26771
< --- *** relation: annotation_directed_improved_draft ***
---
> --- *** relation: gene_cassette_member ***
26851,26853d26773
< --- *** The status of a whole genome sequence,wh ***
< --- *** ere annotation, and verification of codi ***
< --- *** ng regions has occurred.                 ***
26857c26777
< CREATE VIEW annotation_directed_improved_draft AS
---
> CREATE VIEW gene_cassette_member AS
26859c26779
<     feature_id AS annotation_directed_improved_draft_id,
---
>     feature_id AS gene_cassette_member_id,
26863c26783
<   WHERE cvterm.name = 'annotation_directed_improved_draft';
---
>   WHERE cvterm.name = 'cassette_array_member' OR cvterm.name = 'gene_cassette_member';
26866c26786
< --- *** relation: noncontiguous_finished ***
---
> --- *** relation: gene_subarray_member ***
26869,26873d26788
< --- *** The status of a whole genome sequence, w ***
< --- *** here the assembly is high quality, closu ***
< --- *** re approaches have been successful for m ***
< --- *** ost gaps, misassemblies and low quality  ***
< --- *** regions.                                 ***
26877c26792
< CREATE VIEW noncontiguous_finished AS
---
> CREATE VIEW gene_subarray_member AS
26879c26794
<     feature_id AS noncontiguous_finished_id,
---
>     feature_id AS gene_subarray_member_id,
26883c26798
<   WHERE cvterm.name = 'noncontiguous_finished';
---
>   WHERE cvterm.name = 'gene_subarray_member';
26886c26801
< --- *** relation: finished_genome ***
---
> --- *** relation: primer_binding_site ***
26889,26891c26804,26806
< --- *** The status of a whole genome sequence, w ***
< --- *** ith less than 1 error per 100,000 base p ***
< --- *** airs.                                    ***
---
> --- *** Non-covalent primer binding site for ini ***
> --- *** tiation of replication, transcription, o ***
> --- *** r reverse transcription.                 ***
26895c26810
< CREATE VIEW finished_genome AS
---
> CREATE VIEW primer_binding_site AS
26897c26812
<     feature_id AS finished_genome_id,
---
>     feature_id AS primer_binding_site_id,
26901c26816
<   WHERE cvterm.name = 'finished_genome';
---
>   WHERE cvterm.name = 'primer_binding_site';
26904c26819
< --- *** relation: intronic_regulatory_region ***
---
> --- *** relation: gene_array ***
26907,26908c26822,26826
< --- *** A regulatory region that is part of an i ***
< --- *** ntron.                                   ***
---
> --- *** An array includes two or more genes, or  ***
> --- *** two or more gene subarrays, contiguously ***
> --- ***  arranged where the individual genes, or ***
> --- ***  subarrays, are either identical in sequ ***
> --- *** ence, or essentially so.                 ***
26912c26830
< CREATE VIEW intronic_regulatory_region AS
---
> CREATE VIEW gene_array AS
26914c26832
<     feature_id AS intronic_regulatory_region_id,
---
>     feature_id AS gene_array_id,
26918c26836
<   WHERE cvterm.name = 'intronic_regulatory_region';
---
>   WHERE cvterm.name = 'gene_array';
26921c26839
< --- *** relation: centromere_dna_element_i ***
---
> --- *** relation: gene_subarray ***
26924,26928c26842,26846
< --- *** A centromere DNA Element I (CDEI) is a c ***
< --- *** onserved region, part of the centromere, ***
< --- ***  consisting of a consensus region compos ***
< --- *** ed of 8-11bp which enables binding by th ***
< --- *** e centromere binding factor 1(Cbf1p).    ***
---
> --- *** A subarray is, by defintition, a member  ***
> --- *** of a gene array (SO:0005851); the member ***
> --- *** s of a subarray may differ substantially ***
> --- ***  in sequence, but are closely related in ***
> --- ***  function.                               ***
26932c26850
< CREATE VIEW centromere_dna_element_i AS
---
> CREATE VIEW gene_subarray AS
26934c26852
<     feature_id AS centromere_dna_element_i_id,
---
>     feature_id AS gene_subarray_id,
26938c26856
<   WHERE cvterm.name = 'centromere_DNA_Element_I';
---
>   WHERE cvterm.name = 'gene_subarray';
26941c26859
< --- *** relation: centromere_dna_element_ii ***
---
> --- *** relation: gene_cassette ***
26944,26947c26862,26864
< --- *** A centromere DNA Element II (CDEII) is p ***
< --- *** art a conserved region of the centromere ***
< --- *** , consisting of a consensus region that  ***
< --- *** is AT-rich and ~ 75-100 bp in length.    ***
---
> --- *** A gene that can be substituted for a rel ***
> --- *** ated gene at a different site in the gen ***
> --- *** ome.                                     ***
26951c26868
< CREATE VIEW centromere_dna_element_ii AS
---
> CREATE VIEW gene_cassette AS
26953c26870
<     feature_id AS centromere_dna_element_ii_id,
---
>     feature_id AS gene_cassette_id,
26957c26874
<   WHERE cvterm.name = 'centromere_DNA_Element_II';
---
>   WHERE cvterm.name = 'gene_cassette';
26960c26877
< --- *** relation: centromere_dna_element_iii ***
---
> --- *** relation: gene_cassette_array ***
26963,26968c26880,26882
< --- *** A centromere DNA Element I (CDEI) is a c ***
< --- *** onserved region, part of the centromere, ***
< --- ***  consisting of a consensus region that c ***
< --- *** onsists of a 25-bp which enables binding ***
< --- ***  by the centromere DNA binding factor 3  ***
< --- *** (CBF3) complex.                          ***
---
> --- *** An array of non-functional genes whose m ***
> --- *** embers, when captured by recombination f ***
> --- *** orm functional genes.                    ***
26972c26886
< CREATE VIEW centromere_dna_element_iii AS
---
> CREATE VIEW gene_cassette_array AS
26974c26888
<     feature_id AS centromere_dna_element_iii_id,
---
>     feature_id AS gene_cassette_array_id,
26978c26892
<   WHERE cvterm.name = 'centromere_DNA_Element_III';
---
>   WHERE cvterm.name = 'gene_cassette_array';
26981c26895
< --- *** relation: telomeric_repeat ***
---
> --- *** relation: gene_group ***
26984,26988c26898
< --- *** The telomeric repeat is a repeat region, ***
< --- ***  part of the chromosome, which in yeast, ***
< --- ***  is a G-rich terminal sequence of the fo ***
< --- *** rm (TG(1-3))n or more precisely ((TG)(1- ***
< --- *** 6)TG(2-3))n.                             ***
---
> --- *** A collection of related genes.           ***
26992c26902
< CREATE VIEW telomeric_repeat AS
---
> CREATE VIEW gene_group AS
26994c26904
<     feature_id AS telomeric_repeat_id,
---
>     feature_id AS gene_group_id,
26998c26908
<   WHERE cvterm.name = 'telomeric_repeat';
---
>   WHERE cvterm.name = 'operon' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'gene_group';
27001c26911
< --- *** relation: x_element ***
---
> --- *** relation: selenocysteine_trna_primary_transcript ***
27004,27007c26914,26915
< --- *** The X element is a conserved region, of  ***
< --- *** the telomere, of ~475 bp that contains a ***
< --- *** n ARS sequence and in most cases an Abf1 ***
< --- *** p binding site.                          ***
---
> --- *** A primary transcript encoding seryl tRNA ***
> --- ***  (SO:000269).                            ***
27011c26919
< CREATE VIEW x_element AS
---
> CREATE VIEW selenocysteine_trna_primary_transcript AS
27013c26921
<     feature_id AS x_element_id,
---
>     feature_id AS selenocysteine_trna_primary_transcript_id,
27017c26925
<   WHERE cvterm.name = 'X_element';
---
>   WHERE cvterm.name = 'selenocysteine_tRNA_primary_transcript';
27020c26928
< --- *** relation: yac_end ***
---
> --- *** relation: selenocysteinyl_trna ***
27023,27025c26931,26933
< --- *** A region of sequence from the end of a Y ***
< --- *** AC clone that may provide a highly speci ***
< --- *** fic marker.                              ***
---
> --- *** A tRNA sequence that has a selenocystein ***
> --- *** e anticodon, and a 3' selenocysteine bin ***
> --- *** ding region.                             ***
27029c26937
< CREATE VIEW yac_end AS
---
> CREATE VIEW selenocysteinyl_trna AS
27031c26939
<     feature_id AS yac_end_id,
---
>     feature_id AS selenocysteinyl_trna_id,
27035c26943
<   WHERE cvterm.name = 'YAC_end';
---
>   WHERE cvterm.name = 'selenocysteinyl_tRNA';
27038c26946
< --- *** relation: whole_genome_sequence_status ***
---
> --- *** relation: syntenic_region ***
27041c26949,26951
< --- *** The status of whole genome sequence.     ***
---
> --- *** A region in which two or more pairs of h ***
> --- *** omologous markers occur on the same chro ***
> --- *** mosome in two or more species.           ***
27045c26955
< CREATE VIEW whole_genome_sequence_status AS
---
> CREATE VIEW syntenic_region AS
27047c26957
<     feature_id AS whole_genome_sequence_status_id,
---
>     feature_id AS syntenic_region_id,
27051c26961
<   WHERE cvterm.name = 'standard_draft' OR cvterm.name = 'high_quality_draft' OR cvterm.name = 'improved_high_quality_draft' OR cvterm.name = 'annotation_directed_improved_draft' OR cvterm.name = 'noncontiguous_finished' OR cvterm.name = 'finished_genome' OR cvterm.name = 'whole_genome_sequence_status';
---
>   WHERE cvterm.name = 'syntenic_region';
27054c26964
< --- *** relation: heritable_phenotypic_marker ***
---
> --- *** relation: biochemical_region_of_peptide ***
27057,27062c26967,26968
< --- *** A biological_region characterized as a s ***
< --- *** ingle heritable trait in a phenotype scr ***
< --- *** een. The heritable phenotype may be mapp ***
< --- *** ed to a chromosome but generally has not ***
< --- ***  been characterized to a specific gene l ***
< --- *** ocus.                                    ***
---
> --- *** A region of a peptide that is involved i ***
> --- *** n a biochemical function.                ***
27066c26972
< CREATE VIEW heritable_phenotypic_marker AS
---
> CREATE VIEW biochemical_region_of_peptide AS
27068c26974
<     feature_id AS heritable_phenotypic_marker_id,
---
>     feature_id AS biochemical_region_of_peptide_id,
27072c26978
<   WHERE cvterm.name = 'heritable_phenotypic_marker';
---
>   WHERE cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'biochemical_region_of_peptide';
27075c26981
< --- *** relation: peptide_collection ***
---
> --- *** relation: molecular_contact_region ***
27078c26984,26985
< --- *** A collection of peptide sequences.       ***
---
> --- *** A region that is involved a contact with ***
> --- ***  another molecule.                       ***
27082c26989
< CREATE VIEW peptide_collection AS
---
> CREATE VIEW molecular_contact_region AS
27084c26991
<     feature_id AS peptide_collection_id,
---
>     feature_id AS molecular_contact_region_id,
27088c26995
<   WHERE cvterm.name = 'peptide_collection';
---
>   WHERE cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'molecular_contact_region';
27091c26998
< --- *** relation: high_identity_region ***
---
> --- *** relation: intrinsically_unstructured_polypeptide_region ***
27094,27095c27001,27002
< --- *** An experimental feature with high sequen ***
< --- *** ce identity to another sequence.         ***
---
> --- *** A region of polypeptide chain with high  ***
> --- *** conformational flexibility.              ***
27099c27006
< CREATE VIEW high_identity_region AS
---
> CREATE VIEW intrinsically_unstructured_polypeptide_region AS
27101c27008
<     feature_id AS high_identity_region_id,
---
>     feature_id AS intrinsically_unstructured_polypeptide_region_id,
27105c27012
<   WHERE cvterm.name = 'high_identity_region';
---
>   WHERE cvterm.name = 'intrinsically_unstructured_polypeptide_region';
27108c27015
< --- *** relation: processed_transcript ***
---
> --- *** relation: catmat_left_handed_three ***
27111,27113c27018,27028
< --- *** A transcript for which no open reading f ***
< --- *** rame has been identified and for which n ***
< --- *** o other function has been determined.    ***
---
> --- *** A motif of 3 consecutive residues with d ***
> --- *** ihedral angles as follows: res i: phi -9 ***
> --- *** 0 bounds -120 to -60, res i: psi -10 bou ***
> --- *** nds -50 to 30, res i+1: phi -75 bounds - ***
> --- *** 100 to -50, res i+1: psi 140 bounds 110  ***
> --- *** to 170. An extra restriction of the leng ***
> --- *** th of the O to O distance would be usefu ***
> --- *** l, that it be less than 5 Angstrom. More ***
> --- ***  precisely these two oxygens are the mai ***
> --- *** n chain carbonyl oxygen atoms of residue ***
> --- *** s i-1 and i+1.                           ***
27117c27032
< CREATE VIEW processed_transcript AS
---
> CREATE VIEW catmat_left_handed_three AS
27119c27034
<     feature_id AS processed_transcript_id,
---
>     feature_id AS catmat_left_handed_three_id,
27123c27038
<   WHERE cvterm.name = 'processed_transcript';
---
>   WHERE cvterm.name = 'catmat_left_handed_three';
27126c27041
< --- *** relation: assortment_derived_variation ***
---
> --- *** relation: catmat_left_handed_four ***
27129,27130c27044,27056
< --- *** A chromosome variation derived from an e ***
< --- *** vent during meiosis.                     ***
---
> --- *** A motif of 4 consecutive residues with d ***
> --- *** ihedral angles as follows: res i: phi -9 ***
> --- *** 0 bounds -120 to -60, res i psi -10 boun ***
> --- *** ds -50 to 30, res i+1: phi -90 bounds -1 ***
> --- *** 20 to -60, res i+1: psi -10 bounds -50 t ***
> --- *** o 30, res i+2: phi -75 bounds -100 to -5 ***
> --- *** 0, res i+2: psi 140 bounds 110 to 170.   ***
> --- *** The extra restriction of the length of t ***
> --- *** he O to O distance is similar, that it b ***
> --- *** e less than 5 Angstrom. In this case the ***
> --- *** se two Oxygen atoms are the main chain c ***
> --- *** arbonyl oxygen atoms of residues i-1 and ***
> --- ***  i+2.                                    ***
27134c27060
< CREATE VIEW assortment_derived_variation AS
---
> CREATE VIEW catmat_left_handed_four AS
27136c27062
<     feature_id AS assortment_derived_variation_id,
---
>     feature_id AS catmat_left_handed_four_id,
27140c27066
<   WHERE cvterm.name = 'assortment_derived_duplication' OR cvterm.name = 'assortment_derived_deficiency_plus_duplication' OR cvterm.name = 'assortment_derived_deficiency' OR cvterm.name = 'assortment_derived_aneuploid' OR cvterm.name = 'assortment_derived_variation';
---
>   WHERE cvterm.name = 'catmat_left_handed_four';
27143c27069
< --- *** relation: reference_genome ***
---
> --- *** relation: catmat_right_handed_three ***
27146,27148c27072,27082
< --- *** A collection of sequences (often chromos ***
< --- *** omes) taken as the standard for a given  ***
< --- *** organism and genome assembly.            ***
---
> --- *** A motif of 3 consecutive residues with d ***
> --- *** ihedral angles as follows: res i: phi -9 ***
> --- *** 0 bounds -120 to -60, res i: psi -10 bou ***
> --- *** nds -50 to 30, res i+1: phi -75 bounds - ***
> --- *** 100 to -50, res i+1: psi 140 bounds 110  ***
> --- *** to 170. An extra restriction of the leng ***
> --- *** th of the O to O distance would be usefu ***
> --- *** l, that it be less than 5 Angstrom. More ***
> --- ***  precisely these two oxygens are the mai ***
> --- *** n chain carbonyl oxygen atoms of residue ***
> --- *** s i-1 and i+1.                           ***
27152c27086
< CREATE VIEW reference_genome AS
---
> CREATE VIEW catmat_right_handed_three AS
27154c27088
<     feature_id AS reference_genome_id,
---
>     feature_id AS catmat_right_handed_three_id,
27158c27092
<   WHERE cvterm.name = 'reference_genome';
---
>   WHERE cvterm.name = 'catmat_right_handed_three';
27161c27095
< --- *** relation: variant_genome ***
---
> --- *** relation: catmat_right_handed_four ***
27164,27165c27098,27110
< --- *** A collection of sequences (often chromos ***
< --- *** omes) of an individual.                  ***
---
> --- *** A motif of 4 consecutive residues with d ***
> --- *** ihedral angles as follows: res i: phi -9 ***
> --- *** 0 bounds -120 to -60, res i: psi -10 bou ***
> --- *** nds -50 to 30, res i+1: phi -90 bounds - ***
> --- *** 120 to -60, res i+1: psi -10 bounds -50  ***
> --- *** to 30, res i+2: phi -75 bounds -100 to - ***
> --- *** 50, res i+2: psi 140 bounds 110 to 170.  ***
> --- *** The extra restriction of the length of t ***
> --- *** he O to O distance is similar, that it b ***
> --- *** e less than 5 Angstrom. In this case the ***
> --- *** se two Oxygen atoms are the main chain c ***
> --- *** arbonyl oxygen atoms of residues i-1 and ***
> --- ***  i+2.                                    ***
27169c27114
< CREATE VIEW variant_genome AS
---
> CREATE VIEW catmat_right_handed_four AS
27171c27116
<     feature_id AS variant_genome_id,
---
>     feature_id AS catmat_right_handed_four_id,
27175c27120
<   WHERE cvterm.name = 'chromosomally_aberrant_genome' OR cvterm.name = 'variant_genome';
---
>   WHERE cvterm.name = 'catmat_right_handed_four';
27178c27123
< --- *** relation: variant_collection ***
---
> --- *** relation: alpha_beta_motif ***
27181,27182c27126,27131
< --- *** A collection of one or more sequences of ***
< --- ***  an individual.                          ***
---
> --- *** A motif of five consecutive residues and ***
> --- ***  two H-bonds in which: H-bond between CO ***
> --- ***  of residue(i) and NH of residue(i+4), H ***
> --- *** -bond between CO of residue(i) and NH of ***
> --- ***  residue(i+3),Phi angles of residues(i+1 ***
> --- *** ), (i+2) and (i+3) are negative.         ***
27186c27135
< CREATE VIEW variant_collection AS
---
> CREATE VIEW alpha_beta_motif AS
27188c27137
<     feature_id AS variant_collection_id,
---
>     feature_id AS alpha_beta_motif_id,
27192c27141
<   WHERE cvterm.name = 'chromosome_variation' OR cvterm.name = 'allele' OR cvterm.name = 'haplotype' OR cvterm.name = 'genotype' OR cvterm.name = 'diplotype' OR cvterm.name = 'assortment_derived_variation' OR cvterm.name = 'chromosome_number_variation' OR cvterm.name = 'chromosome_structure_variation' OR cvterm.name = 'assortment_derived_duplication' OR cvterm.name = 'assortment_derived_deficiency_plus_duplication' OR cvterm.name = 'assortment_derived_deficiency' OR cvterm.name = 'assortment_derived_aneuploid' OR cvterm.name = 'aneuploid' OR cvterm.name = 'polyploid' OR cvterm.name = 'hyperploid' OR cvterm.name = 'hypoploid' OR cvterm.name = 'autopolyploid' OR cvterm.name = 'allopolyploid' OR cvterm.name = 'free_chromosome_arm' OR cvterm.name = 'chromosomal_transposition' OR cvterm.name = 'aneuploid_chromosome' OR cvterm.name = 'intrachromosomal_mutation' OR cvterm.name = 'interchromosomal_mutation' OR cvterm.name = 'chromosomal_duplication' OR cvterm.name = 'compound_chromosome' OR cvterm.name = 'autosynaptic_chromosome' OR cvterm.name = 'complex_chromosomal_mutation' OR cvterm.name = 'uncharacterised_chromosomal_mutation' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'dexstrosynaptic_chromosome' OR cvterm.name = 'laevosynaptic_chromosome' OR cvterm.name = 'partially_characterised_chromosomal_mutation' OR cvterm.name = 'polymorphic_sequence_variant' OR cvterm.name = 'variant_collection';
---
>   WHERE cvterm.name = 'alpha_beta_motif';
27195c27144
< --- *** relation: alteration_attribute ***
---
> --- *** relation: lipoprotein_signal_peptide ***
27197a27147,27149
> --- *** A peptide that acts as a signal for both ***
> --- ***  membrane translocation and lipid attach ***
> --- *** ment in prokaryotes.                     ***
27201c27153
< CREATE VIEW alteration_attribute AS
---
> CREATE VIEW lipoprotein_signal_peptide AS
27203c27155
<     feature_id AS alteration_attribute_id,
---
>     feature_id AS lipoprotein_signal_peptide_id,
27207c27159
<   WHERE cvterm.name = 'chromosomal_variation_attribute' OR cvterm.name = 'insertion_attribute' OR cvterm.name = 'inversion_attribute' OR cvterm.name = 'translocaton_attribute' OR cvterm.name = 'duplication_attribute' OR cvterm.name = 'intrachromosomal' OR cvterm.name = 'interchromosomal' OR cvterm.name = 'tandem' OR cvterm.name = 'direct' OR cvterm.name = 'inverted' OR cvterm.name = 'pericentric' OR cvterm.name = 'paracentric' OR cvterm.name = 'reciprocal' OR cvterm.name = 'insertional' OR cvterm.name = 'free' OR cvterm.name = 'alteration_attribute';
---
>   WHERE cvterm.name = 'lipoprotein_signal_peptide';
27210c27162
< --- *** relation: chromosomal_variation_attribute ***
---
> --- *** relation: no_output ***
27212a27165,27167
> --- *** An experimental region wherean analysis  ***
> --- *** has been run and not produced any annota ***
> --- *** tion.                                    ***
27216c27171
< CREATE VIEW chromosomal_variation_attribute AS
---
> CREATE VIEW no_output AS
27218c27173
<     feature_id AS chromosomal_variation_attribute_id,
---
>     feature_id AS no_output_id,
27222c27177
<   WHERE cvterm.name = 'intrachromosomal' OR cvterm.name = 'interchromosomal' OR cvterm.name = 'chromosomal_variation_attribute';
---
>   WHERE cvterm.name = 'no_output';
27225c27180
< --- *** relation: intrachromosomal ***
---
> --- *** relation: cleaved_peptide_region ***
27227a27183,27185
> --- *** The cleaved_peptide_regon is the a regio ***
> --- *** n of peptide sequence that is cleaved du ***
> --- *** ring maturation.                         ***
27231c27189
< CREATE VIEW intrachromosomal AS
---
> CREATE VIEW cleaved_peptide_region AS
27233c27191
<     feature_id AS intrachromosomal_id,
---
>     feature_id AS cleaved_peptide_region_id,
27237c27195
<   WHERE cvterm.name = 'intrachromosomal';
---
>   WHERE cvterm.name = 'signal_peptide' OR cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'cleaved_peptide_region';
27240c27198
< --- *** relation: interchromosomal ***
---
> --- *** relation: peptide_coil ***
27242a27201,27205
> --- *** Irregular, unstructured regions of a pro ***
> --- *** tein's backbone, as distinct from the re ***
> --- *** gular region (namely alpha helix and bet ***
> --- *** a strand - characterised by specific pat ***
> --- *** terns of main-chain hydrogen bonds).     ***
27246c27209
< CREATE VIEW interchromosomal AS
---
> CREATE VIEW peptide_coil AS
27248c27211
<     feature_id AS interchromosomal_id,
---
>     feature_id AS peptide_coil_id,
27252c27215
<   WHERE cvterm.name = 'interchromosomal';
---
>   WHERE cvterm.name = 'peptide_coil';
27255c27218
< --- *** relation: insertion_attribute ***
---
> --- *** relation: hydrophobic_region_of_peptide ***
27258c27221,27222
< --- *** A quality of a chromosomal insertion,.   ***
---
> --- *** Hydrophobic regions are regions with a l ***
> --- *** ow affinity for water.                   ***
27262c27226
< CREATE VIEW insertion_attribute AS
---
> CREATE VIEW hydrophobic_region_of_peptide AS
27264c27228
<     feature_id AS insertion_attribute_id,
---
>     feature_id AS hydrophobic_region_of_peptide_id,
27268c27232
<   WHERE cvterm.name = 'tandem' OR cvterm.name = 'direct' OR cvterm.name = 'inverted' OR cvterm.name = 'insertion_attribute';
---
>   WHERE cvterm.name = 'hydrophobic_region_of_peptide';
27271c27235
< --- *** relation: tandem ***
---
> --- *** relation: n_terminal_region ***
27273a27238,27240
> --- *** The amino-terminal positively-charged re ***
> --- *** gion of a signal peptide (approx 1-5 aa) ***
> --- *** .                                        ***
27277c27244
< CREATE VIEW tandem AS
---
> CREATE VIEW n_terminal_region AS
27279c27246
<     feature_id AS tandem_id,
---
>     feature_id AS n_terminal_region_id,
27283c27250
<   WHERE cvterm.name = 'tandem';
---
>   WHERE cvterm.name = 'n_terminal_region';
27286c27253
< --- *** relation: direct ***
---
> --- *** relation: c_terminal_region ***
27289,27291c27256,27257
< --- *** A quality of an insertion where the inse ***
< --- *** rt is not in a cytologically inverted or ***
< --- *** ientation.                               ***
---
> --- *** The more polar, carboxy-terminal region  ***
> --- *** of the signal peptide (approx 3-7 aa).   ***
27295c27261
< CREATE VIEW direct AS
---
> CREATE VIEW c_terminal_region AS
27297c27263
<     feature_id AS direct_id,
---
>     feature_id AS c_terminal_region_id,
27301c27267
<   WHERE cvterm.name = 'direct';
---
>   WHERE cvterm.name = 'c_terminal_region';
27304c27270
< --- *** relation: inverted ***
---
> --- *** relation: central_hydrophobic_region_of_signal_peptide ***
27307,27309c27273,27274
< --- *** A quality of an insertion where the inse ***
< --- *** rt is in a cytologically inverted orient ***
< --- *** ation.                                   ***
---
> --- *** The central, hydrophobic region of the s ***
> --- *** ignal peptide (approx 7-15 aa).          ***
27313c27278
< CREATE VIEW inverted AS
---
> CREATE VIEW central_hydrophobic_region_of_signal_peptide AS
27315c27280
<     feature_id AS inverted_id,
---
>     feature_id AS central_hydrophobic_region_of_signal_peptide_id,
27319c27284
<   WHERE cvterm.name = 'inverted';
---
>   WHERE cvterm.name = 'central_hydrophobic_region_of_signal_peptide';
27322c27287
< --- *** relation: free ***
---
> --- *** relation: polypeptide_conserved_motif ***
27325,27327c27290,27295
< --- *** The quality of a duplication where the n ***
< --- *** ew region exists independently of the or ***
< --- *** iginal.                                  ***
---
> --- *** A conserved motif is a short (up to 20 a ***
> --- *** mino acids) region of biological interes ***
> --- *** t that is conserved in different protein ***
> --- *** s. They may or may not have functional o ***
> --- *** r structural significance within the pro ***
> --- *** teins in which they are found.           ***
27331c27299
< CREATE VIEW free AS
---
> CREATE VIEW polypeptide_conserved_motif AS
27333c27301
<     feature_id AS free_id,
---
>     feature_id AS polypeptide_conserved_motif_id,
27337c27305
<   WHERE cvterm.name = 'free';
---
>   WHERE cvterm.name = 'polypeptide_conserved_motif';
27340c27308
< --- *** relation: inversion_attribute ***
---
> --- *** relation: polypeptide_binding_motif ***
27342a27311,27315
> --- *** A polypeptide binding motif is a short ( ***
> --- *** up to 20 amino acids) polypeptide region ***
> --- ***  of biological interest that contains on ***
> --- *** e or more amino acids experimentally sho ***
> --- *** wn to bind to a ligand.                  ***
27346c27319
< CREATE VIEW inversion_attribute AS
---
> CREATE VIEW polypeptide_binding_motif AS
27348c27321
<     feature_id AS inversion_attribute_id,
---
>     feature_id AS polypeptide_binding_motif_id,
27352c27325
<   WHERE cvterm.name = 'pericentric' OR cvterm.name = 'paracentric' OR cvterm.name = 'inversion_attribute';
---
>   WHERE cvterm.name = 'polypeptide_binding_motif';
27355c27328
< --- *** relation: pericentric ***
---
> --- *** relation: polypeptide_catalytic_motif ***
27357a27331,27334
> --- *** A polypeptide catalytic motif is a short ***
> --- ***  (up to 20 amino acids) polypeptide regi ***
> --- *** on that contains one or more active site ***
> --- ***  residues.                               ***
27361c27338
< CREATE VIEW pericentric AS
---
> CREATE VIEW polypeptide_catalytic_motif AS
27363c27340
<     feature_id AS pericentric_id,
---
>     feature_id AS polypeptide_catalytic_motif_id,
27367c27344
<   WHERE cvterm.name = 'pericentric';
---
>   WHERE cvterm.name = 'polypeptide_catalytic_motif';
27370c27347
< --- *** relation: paracentric ***
---
> --- *** relation: polypeptide_dna_contact ***
27372a27350,27351
> --- *** Residues involved in interactions with D ***
> --- *** NA.                                      ***
27376c27355
< CREATE VIEW paracentric AS
---
> CREATE VIEW polypeptide_dna_contact AS
27378c27357
<     feature_id AS paracentric_id,
---
>     feature_id AS polypeptide_dna_contact_id,
27382c27361
<   WHERE cvterm.name = 'paracentric';
---
>   WHERE cvterm.name = 'polypeptide_DNA_contact';
27385c27364
< --- *** relation: translocaton_attribute ***
---
> --- *** relation: polypeptide_conserved_region ***
27387a27367,27371
> --- *** A subsection of sequence with biological ***
> --- ***  interest that is conserved in different ***
> --- ***  proteins. They may or may not have func ***
> --- *** tional or structural significance within ***
> --- ***  the proteins in which they are found.   ***
27391c27375
< CREATE VIEW translocaton_attribute AS
---
> CREATE VIEW polypeptide_conserved_region AS
27393c27377
<     feature_id AS translocaton_attribute_id,
---
>     feature_id AS polypeptide_conserved_region_id,
27397c27381
<   WHERE cvterm.name = 'reciprocal' OR cvterm.name = 'insertional' OR cvterm.name = 'translocaton_attribute';
---
>   WHERE cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_conserved_region';
27400c27384
< --- *** relation: reciprocal ***
---
> --- *** relation: substitution ***
27402a27387,27388
> --- *** Any change in genomic DNA caused by a si ***
> --- *** ngle event.                              ***
27406c27392
< CREATE VIEW reciprocal AS
---
> CREATE VIEW substitution AS
27408c27394
<     feature_id AS reciprocal_id,
---
>     feature_id AS substitution_id,
27412c27398
<   WHERE cvterm.name = 'reciprocal';
---
>   WHERE cvterm.name = 'sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'point_mutation' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'substitution';
27415c27401
< --- *** relation: insertional ***
---
> --- *** relation: partially_characterised_change_in_dna_sequence ***
27417a27404,27405
> --- *** The nature of the mutation event is only ***
> --- ***  partially characterised.                ***
27421c27409
< CREATE VIEW insertional AS
---
> CREATE VIEW partially_characterised_change_in_dna_sequence AS
27423c27411
<     feature_id AS insertional_id,
---
>     feature_id AS partially_characterised_change_in_dna_sequence_id,
27427c27415
<   WHERE cvterm.name = 'insertional';
---
>   WHERE cvterm.name = 'partially_characterised_change_in_DNA_sequence';
27430c27418
< --- *** relation: duplication_attribute ***
---
> --- *** relation: complex_substitution ***
27432a27421,27425
> --- *** When no simple or well defined DNA mutat ***
> --- *** ion event describes the observed DNA cha ***
> --- *** nge, the keyword "complex" should be use ***
> --- *** d. Usually there are multiple equally pl ***
> --- *** ausible explanations for the change.     ***
27436c27429
< CREATE VIEW duplication_attribute AS
---
> CREATE VIEW complex_substitution AS
27438c27431
<     feature_id AS duplication_attribute_id,
---
>     feature_id AS complex_substitution_id,
27442c27435
<   WHERE cvterm.name = 'free' OR cvterm.name = 'duplication_attribute';
---
>   WHERE cvterm.name = 'MNP' OR cvterm.name = 'complex_substitution';
27445c27438
< --- *** relation: chromosomally_aberrant_genome ***
---
> --- *** relation: uncharacterised_change_in_nucleotide_sequence ***
27447a27441,27443
> --- *** The nature of the mutation event is eith ***
> --- *** er uncharacterised or only partially cha ***
> --- *** racterised.                              ***
27451c27447
< CREATE VIEW chromosomally_aberrant_genome AS
---
> CREATE VIEW uncharacterised_change_in_nucleotide_sequence AS
27453c27449
<     feature_id AS chromosomally_aberrant_genome_id,
---
>     feature_id AS uncharacterised_change_in_nucleotide_sequence_id,
27457c27453
<   WHERE cvterm.name = 'chromosomally_aberrant_genome';
---
>   WHERE cvterm.name = 'partially_characterised_change_in_DNA_sequence' OR cvterm.name = 'uncharacterised_change_in_nucleotide_sequence';
27460c27456
< --- *** relation: assembly_error_correction ***
---
> --- *** relation: point_mutation ***
27463,27466c27459,27462
< --- *** A region of sequence where the final nuc ***
< --- *** leotide assignment differs from the orig ***
< --- *** inal assembly due to an improvement that ***
< --- ***  replaces a mistake.                     ***
---
> --- *** A single nucleotide change which has occ ***
> --- *** urred at the same position of a correspo ***
> --- *** nding nucleotide in a reference sequence ***
> --- *** .                                        ***
27470c27466
< CREATE VIEW assembly_error_correction AS
---
> CREATE VIEW point_mutation AS
27472c27468
<     feature_id AS assembly_error_correction_id,
---
>     feature_id AS point_mutation_id,
27476c27472
<   WHERE cvterm.name = 'assembly_error_correction';
---
>   WHERE cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'point_mutation';
27479c27475
< --- *** relation: base_call_error_correction ***
---
> --- *** relation: transition ***
27482,27485c27478,27481
< --- *** A region of sequence where the final nuc ***
< --- *** leotide assignment is different from tha ***
< --- *** t given by the base caller due to an imp ***
< --- *** rovement that replaces a mistake.        ***
---
> --- *** Change of a pyrimidine nucleotide, C or  ***
> --- *** T, into an other pyrimidine nucleotide,  ***
> --- *** or change of a purine nucleotide, A or G ***
> --- *** , into an other purine nucleotide.       ***
27489c27485
< CREATE VIEW base_call_error_correction AS
---
> CREATE VIEW transition AS
27491c27487
<     feature_id AS base_call_error_correction_id,
---
>     feature_id AS transition_id,
27495c27491
<   WHERE cvterm.name = 'base_call_error_correction';
---
>   WHERE cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'transition';
27498c27494
< --- *** relation: peptide_localization_signal ***
---
> --- *** relation: pyrimidine_transition ***
27501,27503c27497,27498
< --- *** A region of peptide sequence used to tar ***
< --- *** get the polypeptide molecule to a specif ***
< --- *** ic organelle.                            ***
---
> --- *** A substitution of a pyrimidine, C or T,  ***
> --- *** for another pyrimidine.                  ***
27507c27502
< CREATE VIEW peptide_localization_signal AS
---
> CREATE VIEW pyrimidine_transition AS
27509c27504
<     feature_id AS peptide_localization_signal_id,
---
>     feature_id AS pyrimidine_transition_id,
27513c27508
<   WHERE cvterm.name = 'signal_peptide' OR cvterm.name = 'transit_peptide' OR cvterm.name = 'nuclear_localization_signal' OR cvterm.name = 'endosomal_localization_signal' OR cvterm.name = 'lysosomal_localization_signal' OR cvterm.name = 'nuclear_export_signal' OR cvterm.name = 'nuclear_rim_localization_signal' OR cvterm.name = 'peptide_localization_signal';
---
>   WHERE cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'pyrimidine_transition';
27516c27511
< --- *** relation: nuclear_localization_signal ***
---
> --- *** relation: c_to_t_transition ***
27519,27520c27514
< --- *** A polypeptide region that targets a poly ***
< --- *** peptide to the nucleus.                  ***
---
> --- *** A transition of a cytidine to a thymine. ***
27524c27518
< CREATE VIEW nuclear_localization_signal AS
---
> CREATE VIEW c_to_t_transition AS
27526c27520
<     feature_id AS nuclear_localization_signal_id,
---
>     feature_id AS c_to_t_transition_id,
27530c27524
<   WHERE cvterm.name = 'nuclear_localization_signal';
---
>   WHERE cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'C_to_T_transition';
27533c27527
< --- *** relation: endosomal_localization_signal ***
---
> --- *** relation: c_to_t_transition_at_pcpg_site ***
27536,27537c27530,27533
< --- *** A polypeptide region that targets a poly ***
< --- *** peptide to the endosome.                 ***
---
> --- *** The transition of cytidine to thymine oc ***
> --- *** curring at a pCpG site as a consequence  ***
> --- *** of the spontaneous deamination of 5'-met ***
> --- *** hylcytidine.                             ***
27541c27537
< CREATE VIEW endosomal_localization_signal AS
---
> CREATE VIEW c_to_t_transition_at_pcpg_site AS
27543c27539
<     feature_id AS endosomal_localization_signal_id,
---
>     feature_id AS c_to_t_transition_at_pcpg_site_id,
27547c27543
<   WHERE cvterm.name = 'endosomal_localization_signal';
---
>   WHERE cvterm.name = 'C_to_T_transition_at_pCpG_site';
27550c27546
< --- *** relation: lysosomal_localization_signal ***
---
> --- *** relation: t_to_c_transition ***
27553,27554d27548
< --- *** A polypeptide region that targets a poly ***
< --- *** peptide to the lysosome.                 ***
27558c27552
< CREATE VIEW lysosomal_localization_signal AS
---
> CREATE VIEW t_to_c_transition AS
27560c27554
<     feature_id AS lysosomal_localization_signal_id,
---
>     feature_id AS t_to_c_transition_id,
27564c27558
<   WHERE cvterm.name = 'lysosomal_localization_signal';
---
>   WHERE cvterm.name = 'T_to_C_transition';
27567c27561
< --- *** relation: nuclear_export_signal ***
---
> --- *** relation: purine_transition ***
27570,27571c27564,27565
< --- *** A polypeptide region that targets a poly ***
< --- *** peptide to he cytoplasm.                 ***
---
> --- *** A substitution of a purine, A or G, for  ***
> --- *** another purine.                          ***
27575c27569
< CREATE VIEW nuclear_export_signal AS
---
> CREATE VIEW purine_transition AS
27577c27571
<     feature_id AS nuclear_export_signal_id,
---
>     feature_id AS purine_transition_id,
27581c27575
<   WHERE cvterm.name = 'nuclear_export_signal';
---
>   WHERE cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'purine_transition';
27584c27578
< --- *** relation: recombination_signal_sequence ***
---
> --- *** relation: a_to_g_transition ***
27587c27581
< --- *** A region recognized by a recombinase.    ***
---
> --- *** A transition of an adenine to a guanine. ***
27591c27585
< CREATE VIEW recombination_signal_sequence AS
---
> CREATE VIEW a_to_g_transition AS
27593c27587
<     feature_id AS recombination_signal_sequence_id,
---
>     feature_id AS a_to_g_transition_id,
27597c27591
<   WHERE cvterm.name = 'recombination_signal_sequence';
---
>   WHERE cvterm.name = 'A_to_G_transition';
27600c27594
< --- *** relation: cryptic_splice_site ***
---
> --- *** relation: g_to_a_transition ***
27603,27605c27597
< --- *** A splice site that is in part of the tra ***
< --- *** nscript not normally spliced. They occur ***
< --- ***  via mutation or transcriptional error.  ***
---
> --- *** A transition of a guanine to an adenine. ***
27609c27601
< CREATE VIEW cryptic_splice_site AS
---
> CREATE VIEW g_to_a_transition AS
27611c27603
<     feature_id AS cryptic_splice_site_id,
---
>     feature_id AS g_to_a_transition_id,
27615c27607
<   WHERE cvterm.name = 'cryptic_splice_site';
---
>   WHERE cvterm.name = 'G_to_A_transition';
27618c27610
< --- *** relation: nuclear_rim_localization_signal ***
---
> --- *** relation: transversion ***
27621,27622c27613,27615
< --- *** A polypeptide region that targets a poly ***
< --- *** peptide to the nuclear rim.              ***
---
> --- *** Change of a pyrimidine nucleotide, C or  ***
> --- *** T, into a purine nucleotide, A or G, or  ***
> --- *** vice versa.                              ***
27626c27619
< CREATE VIEW nuclear_rim_localization_signal AS
---
> CREATE VIEW transversion AS
27628c27621
<     feature_id AS nuclear_rim_localization_signal_id,
---
>     feature_id AS transversion_id,
27632c27625
<   WHERE cvterm.name = 'nuclear_rim_localization_signal';
---
>   WHERE cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'transversion';
27635c27628
< --- *** relation: p_element ***
---
> --- *** relation: pyrimidine_to_purine_transversion ***
27638,27639c27631,27632
< --- *** A P_element is a DNA transposon responsi ***
< --- *** ble for hybrid dysgenesis.               ***
---
> --- *** Change of a pyrimidine nucleotide, C or  ***
> --- *** T, into a purine nucleotide, A or G.     ***
27643c27636
< CREATE VIEW p_element AS
---
> CREATE VIEW pyrimidine_to_purine_transversion AS
27645c27638
<     feature_id AS p_element_id,
---
>     feature_id AS pyrimidine_to_purine_transversion_id,
27649c27642
<   WHERE cvterm.name = 'p_element';
---
>   WHERE cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'pyrimidine_to_purine_transversion';
27652c27645
< --- *** relation: functional_variant ***
---
> --- *** relation: c_to_a_transversion ***
27655,27657c27648
< --- *** A sequence variant in which the function ***
< --- ***  of a gene product is altered with respe ***
< --- *** ct to a reference.                       ***
---
> --- *** A transversion from cytidine to adenine. ***
27661c27652
< CREATE VIEW functional_variant AS
---
> CREATE VIEW c_to_a_transversion AS
27663c27654
<     feature_id AS functional_variant_id,
---
>     feature_id AS c_to_a_transversion_id,
27667c27658
<   WHERE cvterm.name = 'transcript_function_variant' OR cvterm.name = 'translational_product_function_variant' OR cvterm.name = 'level_of_transcript_variant' OR cvterm.name = 'transcript_processing_variant' OR cvterm.name = 'transcript_stability_variant' OR cvterm.name = 'transcription_variant' OR cvterm.name = 'decreased_transcript_level_variant' OR cvterm.name = 'increased_transcript_level_variant' OR cvterm.name = 'editing_variant' OR cvterm.name = 'polyadenylation_variant' OR cvterm.name = 'increased_polyadenylation_variant' OR cvterm.name = 'decreased_polyadenylation_variant' OR cvterm.name = 'decreased_transcript_stability_variant' OR cvterm.name = 'increased_transcript_stability_variant' OR cvterm.name = 'rate_of_transcription_variant' OR cvterm.name = 'increased_transcription_rate_variant' OR cvterm.name = 'decreased_transcription_rate_variant' OR cvterm.name = 'translational_product_level_variant' OR cvterm.name = 'polypeptide_function_variant' OR cvterm.name = 'decreased_translational_product_level' OR cvterm.name = 'increased_translational_product_level' OR cvterm.name = 'polypeptide_gain_of_function_variant' OR cvterm.name = 'polypeptide_localization_variant' OR cvterm.name = 'polypeptide_loss_of_function_variant' OR cvterm.name = 'polypeptide_post_translational_processing_variant' OR cvterm.name = 'inactive_ligand_binding_site' OR cvterm.name = 'polypeptide_partial_loss_of_function' OR cvterm.name = 'inactive_catalytic_site' OR cvterm.name = 'functional_variant';
---
>   WHERE cvterm.name = 'C_to_A_transversion';
27670c27661
< --- *** relation: structural_variant ***
---
> --- *** relation: c_to_g_transversion ***
27673,27674d27663
< --- *** A sequence variant that changes one or m ***
< --- *** ore sequence features.                   ***
27678c27667
< CREATE VIEW structural_variant AS
---
> CREATE VIEW c_to_g_transversion AS
27680c27669
<     feature_id AS structural_variant_id,
---
>     feature_id AS c_to_g_transversion_id,
27684c27673
<   WHERE cvterm.name = 'silent_mutation' OR cvterm.name = 'copy_number_change' OR cvterm.name = 'gene_variant' OR cvterm.name = 'regulatory_region_variant' OR cvterm.name = 'intergenic_variant' OR cvterm.name = 'upstream_gene_variant' OR cvterm.name = 'downstream_gene_variant' OR cvterm.name = 'gene_fusion' OR cvterm.name = 'splicing_variant' OR cvterm.name = 'transcript_variant' OR cvterm.name = 'translational_product_structure_variant' OR cvterm.name = 'cryptic_splice_site_variant' OR cvterm.name = 'exon_loss' OR cvterm.name = 'intron_gain' OR cvterm.name = 'splice_region_variant' OR cvterm.name = 'cryptic_splice_acceptor' OR cvterm.name = 'cryptic_splice_donor' OR cvterm.name = 'complex_change_in_transcript' OR cvterm.name = 'transcript_secondary_structure_variant' OR cvterm.name = 'nc_transcript_variant' OR cvterm.name = 'NMD_transcript_variant' OR cvterm.name = 'UTR_variant' OR cvterm.name = 'intron_variant' OR cvterm.name = 'exon_variant' OR cvterm.name = 'compensatory_transcript_secondary_structure_variant' OR cvterm.name = 'mature_miRNA_variant' OR cvterm.name = '5_prime_UTR_variant' OR cvterm.name = '3_prime_UTR_variant' OR cvterm.name = 'splice_site_variant' OR cvterm.name = 'splice_acceptor_variant' OR cvterm.name = 'splice_donor_variant' OR cvterm.name = 'splice_donor_5th_base_variant' OR cvterm.name = 'coding_sequence_variant' OR cvterm.name = 'non_coding_exon_variant' OR cvterm.name = 'codon_variant' OR cvterm.name = 'frameshift_variant' OR cvterm.name = 'inframe_variant' OR cvterm.name = 'initiator_codon_change' OR cvterm.name = 'non_synonymous_codon' OR cvterm.name = 'synonymous_codon' OR cvterm.name = 'terminal_codon_variant' OR cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'frame_restoring_variant' OR cvterm.name = 'minus_1_frameshift_variant' OR cvterm.name = 'minus_2_frameshift_variant' OR cvterm.name = 'plus_1_frameshift_variant' OR cvterm.name = 'plus_2_frameshift variant' OR cvterm.name = 'inframe_codon_gain' OR cvterm.name = 'inframe_codon_loss' OR cvterm.name = '3D_polypeptide_structure_variant' OR cvterm.name = 'complex_change_of_translational_product_variant' OR cvterm.name = 'polypeptide_sequence_variant' OR cvterm.name = 'complex_3D_structural_variant' OR cvterm.name = 'conformational_change_variant' OR cvterm.name = 'amino_acid_deletion' OR cvterm.name = 'amino_acid_insertion' OR cvterm.name = 'amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide' OR cvterm.name = 'polypeptide_fusion' OR cvterm.name = 'polypeptide_truncation' OR cvterm.name = 'conservative_amino_acid_substitution' OR cvterm.name = 'non_conservative_amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide_C_terminal' OR cvterm.name = 'elongated_polypeptide_N_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal' OR cvterm.name = 'TF_binding_site_variant' OR cvterm.name = '5KB_upstream_variant' OR cvterm.name = '2KB_upstream_variant' OR cvterm.name = '5KB_downstream_variant' OR cvterm.name = '500B_downstream_variant' OR cvterm.name = 'structural_variant';
---
>   WHERE cvterm.name = 'C_to_G_transversion';
27687c27676
< --- *** relation: transcript_function_variant ***
---
> --- *** relation: t_to_a_transversion ***
27690,27692c27679
< --- *** A sequence variant which alters the func ***
< --- *** tioning of a transcript with respect to  ***
< --- *** a reference sequence.                    ***
---
> --- *** A transversion from T to A.              ***
27696c27683
< CREATE VIEW transcript_function_variant AS
---
> CREATE VIEW t_to_a_transversion AS
27698c27685
<     feature_id AS transcript_function_variant_id,
---
>     feature_id AS t_to_a_transversion_id,
27702c27689
<   WHERE cvterm.name = 'level_of_transcript_variant' OR cvterm.name = 'transcript_processing_variant' OR cvterm.name = 'transcript_stability_variant' OR cvterm.name = 'transcription_variant' OR cvterm.name = 'decreased_transcript_level_variant' OR cvterm.name = 'increased_transcript_level_variant' OR cvterm.name = 'editing_variant' OR cvterm.name = 'polyadenylation_variant' OR cvterm.name = 'increased_polyadenylation_variant' OR cvterm.name = 'decreased_polyadenylation_variant' OR cvterm.name = 'decreased_transcript_stability_variant' OR cvterm.name = 'increased_transcript_stability_variant' OR cvterm.name = 'rate_of_transcription_variant' OR cvterm.name = 'increased_transcription_rate_variant' OR cvterm.name = 'decreased_transcription_rate_variant' OR cvterm.name = 'transcript_function_variant';
---
>   WHERE cvterm.name = 'T_to_A_transversion';
27705c27692
< --- *** relation: translational_product_function_variant ***
---
> --- *** relation: t_to_g_transversion ***
27708,27710c27695
< --- *** A sequence variant that affects the func ***
< --- *** tioning of a translational product with  ***
< --- *** respect to a reference sequence.         ***
---
> --- *** A transversion from T to G.              ***
27714c27699
< CREATE VIEW translational_product_function_variant AS
---
> CREATE VIEW t_to_g_transversion AS
27716c27701
<     feature_id AS translational_product_function_variant_id,
---
>     feature_id AS t_to_g_transversion_id,
27720c27705
<   WHERE cvterm.name = 'translational_product_level_variant' OR cvterm.name = 'polypeptide_function_variant' OR cvterm.name = 'decreased_translational_product_level' OR cvterm.name = 'increased_translational_product_level' OR cvterm.name = 'polypeptide_gain_of_function_variant' OR cvterm.name = 'polypeptide_localization_variant' OR cvterm.name = 'polypeptide_loss_of_function_variant' OR cvterm.name = 'polypeptide_post_translational_processing_variant' OR cvterm.name = 'inactive_ligand_binding_site' OR cvterm.name = 'polypeptide_partial_loss_of_function' OR cvterm.name = 'inactive_catalytic_site' OR cvterm.name = 'translational_product_function_variant';
---
>   WHERE cvterm.name = 'T_to_G_transversion';
27723c27708
< --- *** relation: level_of_transcript_variant ***
---
> --- *** relation: purine_to_pyrimidine_transversion ***
27726,27727c27711,27712
< --- *** A sequence variant which alters the leve ***
< --- *** l of a transcript.                       ***
---
> --- *** Change of a purine nucleotide, A or G ,  ***
> --- *** into a pyrimidine nucleotide C or T.     ***
27731c27716
< CREATE VIEW level_of_transcript_variant AS
---
> CREATE VIEW purine_to_pyrimidine_transversion AS
27733c27718
<     feature_id AS level_of_transcript_variant_id,
---
>     feature_id AS purine_to_pyrimidine_transversion_id,
27737c27722
<   WHERE cvterm.name = 'decreased_transcript_level_variant' OR cvterm.name = 'increased_transcript_level_variant' OR cvterm.name = 'level_of_transcript_variant';
---
>   WHERE cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion';
27740c27725
< --- *** relation: decreased_transcript_level_variant ***
---
> --- *** relation: a_to_c_transversion ***
27743,27745c27728
< --- *** A sequence variant that increases the le ***
< --- *** vel of mature, spliced and processed RNA ***
< --- ***  with respect to a reference sequence.   ***
---
> --- *** A transversion from adenine to cytidine. ***
27749c27732
< CREATE VIEW decreased_transcript_level_variant AS
---
> CREATE VIEW a_to_c_transversion AS
27751c27734
<     feature_id AS decreased_transcript_level_variant_id,
---
>     feature_id AS a_to_c_transversion_id,
27755,28292c27738
<   WHERE cvterm.name = 'decreased_transcript_level_variant';
< 
< --- ************************************************
< --- *** relation: increased_transcript_level_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that increases the le ***
< --- *** vel of mature, spliced and processed RNA ***
< --- ***  with respect to a reference sequence.   ***
< --- ************************************************
< ---
< 
< CREATE VIEW increased_transcript_level_variant AS
<   SELECT
<     feature_id AS increased_transcript_level_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'increased_transcript_level_variant';
< 
< --- ************************************************
< --- *** relation: transcript_processing_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that affects the post ***
< --- ***  transcriptional processing of a transcr ***
< --- *** ipt with respect to a reference sequence ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW transcript_processing_variant AS
<   SELECT
<     feature_id AS transcript_processing_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'editing_variant' OR cvterm.name = 'polyadenylation_variant' OR cvterm.name = 'increased_polyadenylation_variant' OR cvterm.name = 'decreased_polyadenylation_variant' OR cvterm.name = 'transcript_processing_variant';
< 
< --- ************************************************
< --- *** relation: editing_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transcript processing variant whereby  ***
< --- *** the process of editing is disrupted with ***
< --- ***  respect to the reference.               ***
< --- ************************************************
< ---
< 
< CREATE VIEW editing_variant AS
<   SELECT
<     feature_id AS editing_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'editing_variant';
< 
< --- ************************************************
< --- *** relation: polyadenylation_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that changes polyaden ***
< --- *** ylation with respect to a reference sequ ***
< --- *** ence.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW polyadenylation_variant AS
<   SELECT
<     feature_id AS polyadenylation_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'increased_polyadenylation_variant' OR cvterm.name = 'decreased_polyadenylation_variant' OR cvterm.name = 'polyadenylation_variant';
< 
< --- ************************************************
< --- *** relation: transcript_stability_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A variant that changes the stability of  ***
< --- *** a transcript with respect to a reference ***
< --- ***  sequence.                               ***
< --- ************************************************
< ---
< 
< CREATE VIEW transcript_stability_variant AS
<   SELECT
<     feature_id AS transcript_stability_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'decreased_transcript_stability_variant' OR cvterm.name = 'increased_transcript_stability_variant' OR cvterm.name = 'transcript_stability_variant';
< 
< --- ************************************************
< --- *** relation: decreased_transcript_stability_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that decreases transc ***
< --- *** ript stability with respect to a referen ***
< --- *** ce sequence.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW decreased_transcript_stability_variant AS
<   SELECT
<     feature_id AS decreased_transcript_stability_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'decreased_transcript_stability_variant';
< 
< --- ************************************************
< --- *** relation: increased_transcript_stability_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that increases transc ***
< --- *** ript stability with respect to a referen ***
< --- *** ce sequence.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW increased_transcript_stability_variant AS
<   SELECT
<     feature_id AS increased_transcript_stability_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'increased_transcript_stability_variant';
< 
< --- ************************************************
< --- *** relation: transcription_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A variant that changes alters the transc ***
< --- *** ription of a transcript with respect to  ***
< --- *** a reference sequence.                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW transcription_variant AS
<   SELECT
<     feature_id AS transcription_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'rate_of_transcription_variant' OR cvterm.name = 'increased_transcription_rate_variant' OR cvterm.name = 'decreased_transcription_rate_variant' OR cvterm.name = 'transcription_variant';
< 
< --- ************************************************
< --- *** relation: rate_of_transcription_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that changes the rate ***
< --- ***  of transcription with respect to a refe ***
< --- *** rence sequence.                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW rate_of_transcription_variant AS
<   SELECT
<     feature_id AS rate_of_transcription_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'increased_transcription_rate_variant' OR cvterm.name = 'decreased_transcription_rate_variant' OR cvterm.name = 'rate_of_transcription_variant';
< 
< --- ************************************************
< --- *** relation: increased_transcription_rate_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that increases the ra ***
< --- *** te of transcription with respect to a re ***
< --- *** ference sequence.                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW increased_transcription_rate_variant AS
<   SELECT
<     feature_id AS increased_transcription_rate_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'increased_transcription_rate_variant';
< 
< --- ************************************************
< --- *** relation: decreased_transcription_rate_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that decreases the ra ***
< --- *** te of transcription with respect to a re ***
< --- *** ference sequence.                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW decreased_transcription_rate_variant AS
<   SELECT
<     feature_id AS decreased_transcription_rate_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'decreased_transcription_rate_variant';
< 
< --- ************************************************
< --- *** relation: translational_product_level_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A functional variant that changes the tr ***
< --- *** anslational product level with respect t ***
< --- *** o a reference sequence.                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW translational_product_level_variant AS
<   SELECT
<     feature_id AS translational_product_level_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'decreased_translational_product_level' OR cvterm.name = 'increased_translational_product_level' OR cvterm.name = 'translational_product_level_variant';
< 
< --- ************************************************
< --- *** relation: polypeptide_function_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which changes polypep ***
< --- *** tide functioning with respect to a refer ***
< --- *** ence sequence.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_function_variant AS
<   SELECT
<     feature_id AS polypeptide_function_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_gain_of_function_variant' OR cvterm.name = 'polypeptide_localization_variant' OR cvterm.name = 'polypeptide_loss_of_function_variant' OR cvterm.name = 'polypeptide_post_translational_processing_variant' OR cvterm.name = 'inactive_ligand_binding_site' OR cvterm.name = 'polypeptide_partial_loss_of_function' OR cvterm.name = 'inactive_catalytic_site' OR cvterm.name = 'polypeptide_function_variant';
< 
< --- ************************************************
< --- *** relation: decreased_translational_product_level ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which decreases the t ***
< --- *** ranslational product level with respect  ***
< --- *** to a reference sequence.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW decreased_translational_product_level AS
<   SELECT
<     feature_id AS decreased_translational_product_level_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'decreased_translational_product_level';
< 
< --- ************************************************
< --- *** relation: increased_translational_product_level ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which increases the t ***
< --- *** ranslational product level with respect  ***
< --- *** to a reference sequence.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW increased_translational_product_level AS
<   SELECT
<     feature_id AS increased_translational_product_level_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'increased_translational_product_level';
< 
< --- ************************************************
< --- *** relation: polypeptide_gain_of_function_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which causes gain of  ***
< --- *** polypeptide function with respect to a r ***
< --- *** eference sequence.                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_gain_of_function_variant AS
<   SELECT
<     feature_id AS polypeptide_gain_of_function_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_gain_of_function_variant';
< 
< --- ************************************************
< --- *** relation: polypeptide_localization_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which changes the loc ***
< --- *** alization of a polypeptide with respect  ***
< --- *** to a reference sequence.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_localization_variant AS
<   SELECT
<     feature_id AS polypeptide_localization_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_localization_variant';
< 
< --- ************************************************
< --- *** relation: polypeptide_loss_of_function_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that causes the loss  ***
< --- *** of a polypeptide function with respect t ***
< --- *** o a reference sequence.                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_loss_of_function_variant AS
<   SELECT
<     feature_id AS polypeptide_loss_of_function_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inactive_ligand_binding_site' OR cvterm.name = 'polypeptide_partial_loss_of_function' OR cvterm.name = 'inactive_catalytic_site' OR cvterm.name = 'polypeptide_loss_of_function_variant';
< 
< --- ************************************************
< --- *** relation: inactive_ligand_binding_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that causes the inact ***
< --- *** ivation of a ligand binding site with re ***
< --- *** spect to a reference sequence.           ***
< --- ************************************************
< ---
< 
< CREATE VIEW inactive_ligand_binding_site AS
<   SELECT
<     feature_id AS inactive_ligand_binding_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inactive_catalytic_site' OR cvterm.name = 'inactive_ligand_binding_site';
< 
< --- ************************************************
< --- *** relation: polypeptide_partial_loss_of_function ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that causes some but  ***
< --- *** not all loss of polypeptide function wit ***
< --- *** h respect to a reference sequence.       ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_partial_loss_of_function AS
<   SELECT
<     feature_id AS polypeptide_partial_loss_of_function_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_partial_loss_of_function';
< 
< --- ************************************************
< --- *** relation: polypeptide_post_translational_processing_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that causes a change  ***
< --- *** in post translational processing of the  ***
< --- *** peptide with respect to a reference sequ ***
< --- *** ence.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_post_translational_processing_variant AS
<   SELECT
<     feature_id AS polypeptide_post_translational_processing_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_post_translational_processing_variant';
< 
< --- ************************************************
< --- *** relation: copy_number_change ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant where copies of a fea ***
< --- *** ture (CNV) are either increased or decre ***
< --- *** ased.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW copy_number_change AS
<   SELECT
<     feature_id AS copy_number_change_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'copy_number_change';
< 
< --- ************************************************
< --- *** relation: gene_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant where the structure o ***
< --- *** f the gene is changed.                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_variant AS
<   SELECT
<     feature_id AS gene_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_fusion' OR cvterm.name = 'splicing_variant' OR cvterm.name = 'transcript_variant' OR cvterm.name = 'translational_product_structure_variant' OR cvterm.name = 'cryptic_splice_site_variant' OR cvterm.name = 'exon_loss' OR cvterm.name = 'intron_gain' OR cvterm.name = 'splice_region_variant' OR cvterm.name = 'cryptic_splice_acceptor' OR cvterm.name = 'cryptic_splice_donor' OR cvterm.name = 'complex_change_in_transcript' OR cvterm.name = 'transcript_secondary_structure_variant' OR cvterm.name = 'nc_transcript_variant' OR cvterm.name = 'NMD_transcript_variant' OR cvterm.name = 'UTR_variant' OR cvterm.name = 'intron_variant' OR cvterm.name = 'exon_variant' OR cvterm.name = 'compensatory_transcript_secondary_structure_variant' OR cvterm.name = 'mature_miRNA_variant' OR cvterm.name = '5_prime_UTR_variant' OR cvterm.name = '3_prime_UTR_variant' OR cvterm.name = 'splice_site_variant' OR cvterm.name = 'splice_acceptor_variant' OR cvterm.name = 'splice_donor_variant' OR cvterm.name = 'splice_donor_5th_base_variant' OR cvterm.name = 'coding_sequence_variant' OR cvterm.name = 'non_coding_exon_variant' OR cvterm.name = 'codon_variant' OR cvterm.name = 'frameshift_variant' OR cvterm.name = 'inframe_variant' OR cvterm.name = 'initiator_codon_change' OR cvterm.name = 'non_synonymous_codon' OR cvterm.name = 'synonymous_codon' OR cvterm.name = 'terminal_codon_variant' OR cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'frame_restoring_variant' OR cvterm.name = 'minus_1_frameshift_variant' OR cvterm.name = 'minus_2_frameshift_variant' OR cvterm.name = 'plus_1_frameshift_variant' OR cvterm.name = 'plus_2_frameshift variant' OR cvterm.name = 'inframe_codon_gain' OR cvterm.name = 'inframe_codon_loss' OR cvterm.name = '3D_polypeptide_structure_variant' OR cvterm.name = 'complex_change_of_translational_product_variant' OR cvterm.name = 'polypeptide_sequence_variant' OR cvterm.name = 'complex_3D_structural_variant' OR cvterm.name = 'conformational_change_variant' OR cvterm.name = 'amino_acid_deletion' OR cvterm.name = 'amino_acid_insertion' OR cvterm.name = 'amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide' OR cvterm.name = 'polypeptide_fusion' OR cvterm.name = 'polypeptide_truncation' OR cvterm.name = 'conservative_amino_acid_substitution' OR cvterm.name = 'non_conservative_amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide_C_terminal' OR cvterm.name = 'elongated_polypeptide_N_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal' OR cvterm.name = 'gene_variant';
< 
< --- ************************************************
< --- *** relation: gene_fusion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant whereby a two genes h ***
< --- *** ave become joined.                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_fusion AS
<   SELECT
<     feature_id AS gene_fusion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_fusion';
< 
< --- ************************************************
< --- *** relation: regulatory_region_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant located within a regu ***
< --- *** latory region.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW regulatory_region_variant AS
<   SELECT
<     feature_id AS regulatory_region_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'TF_binding_site_variant' OR cvterm.name = 'regulatory_region_variant';
< 
< --- ************************************************
< --- *** relation: stop_retained_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant where at least one ba ***
< --- *** se in the terminator codon is changed, b ***
< --- *** ut the terminator remains.               ***
< --- ************************************************
< ---
< 
< CREATE VIEW stop_retained_variant AS
<   SELECT
<     feature_id AS stop_retained_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'stop_retained_variant';
< 
< --- ************************************************
< --- *** relation: splicing_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that changes the proc ***
< --- *** ess of splicing.                         ***
< --- ************************************************
< ---
< 
< CREATE VIEW splicing_variant AS
<   SELECT
<     feature_id AS splicing_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'cryptic_splice_site_variant' OR cvterm.name = 'exon_loss' OR cvterm.name = 'intron_gain' OR cvterm.name = 'splice_region_variant' OR cvterm.name = 'cryptic_splice_acceptor' OR cvterm.name = 'cryptic_splice_donor' OR cvterm.name = 'splicing_variant';
< 
< --- ************************************************
< --- *** relation: cryptic_splice_site_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant causing a new (functi ***
< --- *** onal) splice site.                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW cryptic_splice_site_variant AS
<   SELECT
<     feature_id AS cryptic_splice_site_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'cryptic_splice_acceptor' OR cvterm.name = 'cryptic_splice_donor' OR cvterm.name = 'cryptic_splice_site_variant';
< 
< --- ************************************************
< --- *** relation: cryptic_splice_acceptor ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant whereby a new splice  ***
< --- *** site is created due to the activation of ***
< --- ***  a new acceptor.                         ***
< --- ************************************************
< ---
< 
< CREATE VIEW cryptic_splice_acceptor AS
<   SELECT
<     feature_id AS cryptic_splice_acceptor_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'cryptic_splice_acceptor';
< 
< --- ************************************************
< --- *** relation: cryptic_splice_donor ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant whereby a new splice  ***
< --- *** site is created due to the activation of ***
< --- ***  a new donor.                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW cryptic_splice_donor AS
<   SELECT
<     feature_id AS cryptic_splice_donor_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'cryptic_splice_donor';
---
>   WHERE cvterm.name = 'A_to_C_transversion';
28295c27741
< --- *** relation: exon_loss ***
---
> --- *** relation: a_to_t_transversion ***
28298,28299c27744
< --- *** A sequence variant whereby an exon is lo ***
< --- *** st from the transcript.                  ***
---
> --- *** A transversion from adenine to thymine.  ***
28303c27748
< CREATE VIEW exon_loss AS
---
> CREATE VIEW a_to_t_transversion AS
28305c27750
<     feature_id AS exon_loss_id,
---
>     feature_id AS a_to_t_transversion_id,
28309c27754
<   WHERE cvterm.name = 'exon_loss';
---
>   WHERE cvterm.name = 'A_to_T_transversion';
28312c27757
< --- *** relation: intron_gain ***
---
> --- *** relation: g_to_c_transversion ***
28315,28318c27760
< --- *** A sequence variant whereby an intron is  ***
< --- *** gained by the processed transcript; usua ***
< --- *** lly a result of an alteration of the don ***
< --- *** or or acceptor.                          ***
---
> --- *** A transversion from guanine to cytidine. ***
28322c27764
< CREATE VIEW intron_gain AS
---
> CREATE VIEW g_to_c_transversion AS
28324c27766
<     feature_id AS intron_gain_id,
---
>     feature_id AS g_to_c_transversion_id,
28328c27770
<   WHERE cvterm.name = 'intron_gain';
---
>   WHERE cvterm.name = 'G_to_C_transversion';
28331c27773
< --- *** relation: splice_acceptor_variant ***
---
> --- *** relation: g_to_t_transversion ***
28334,28335c27776
< --- *** A splice variant that changes the 2 base ***
< --- ***  region at the 3' end of an intron.      ***
---
> --- *** A transversion from guanine to thymine.  ***
28339c27780
< CREATE VIEW splice_acceptor_variant AS
---
> CREATE VIEW g_to_t_transversion AS
28341c27782
<     feature_id AS splice_acceptor_variant_id,
---
>     feature_id AS g_to_t_transversion_id,
28345c27786
<   WHERE cvterm.name = 'splice_acceptor_variant';
---
>   WHERE cvterm.name = 'G_to_T_transversion';
28348c27789
< --- *** relation: splice_donor_variant ***
---
> --- *** relation: intrachromosomal_mutation ***
28351,28352d27791
< --- *** A splice variant that changes the2 base  ***
< --- *** region at the 5' end of an intron.       ***
28356c27795
< CREATE VIEW splice_donor_variant AS
---
> CREATE VIEW intrachromosomal_mutation AS
28358c27797
<     feature_id AS splice_donor_variant_id,
---
>     feature_id AS intrachromosomal_mutation_id,
28362c27801
<   WHERE cvterm.name = 'splice_donor_variant';
---
>   WHERE cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'intrachromosomal_mutation';
28365c27804
< --- *** relation: transcript_variant ***
---
> --- *** relation: chromosomal_deletion ***
28368,28369c27807
< --- *** A sequence variant that changes the stru ***
< --- *** cture of the transcript.                 ***
---
> --- *** An incomplete chromosome.                ***
28373c27811
< CREATE VIEW transcript_variant AS
---
> CREATE VIEW chromosomal_deletion AS
28375c27813
<     feature_id AS transcript_variant_id,
---
>     feature_id AS chromosomal_deletion_id,
28379c27817
<   WHERE cvterm.name = 'complex_change_in_transcript' OR cvterm.name = 'transcript_secondary_structure_variant' OR cvterm.name = 'nc_transcript_variant' OR cvterm.name = 'NMD_transcript_variant' OR cvterm.name = 'UTR_variant' OR cvterm.name = 'intron_variant' OR cvterm.name = 'exon_variant' OR cvterm.name = 'compensatory_transcript_secondary_structure_variant' OR cvterm.name = 'mature_miRNA_variant' OR cvterm.name = '5_prime_UTR_variant' OR cvterm.name = '3_prime_UTR_variant' OR cvterm.name = 'splice_site_variant' OR cvterm.name = 'splice_acceptor_variant' OR cvterm.name = 'splice_donor_variant' OR cvterm.name = 'splice_donor_5th_base_variant' OR cvterm.name = 'coding_sequence_variant' OR cvterm.name = 'non_coding_exon_variant' OR cvterm.name = 'codon_variant' OR cvterm.name = 'frameshift_variant' OR cvterm.name = 'inframe_variant' OR cvterm.name = 'initiator_codon_change' OR cvterm.name = 'non_synonymous_codon' OR cvterm.name = 'synonymous_codon' OR cvterm.name = 'terminal_codon_variant' OR cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'frame_restoring_variant' OR cvterm.name = 'minus_1_frameshift_variant' OR cvterm.name = 'minus_2_frameshift_variant' OR cvterm.name = 'plus_1_frameshift_variant' OR cvterm.name = 'plus_2_frameshift variant' OR cvterm.name = 'inframe_codon_gain' OR cvterm.name = 'inframe_codon_loss' OR cvterm.name = 'transcript_variant';
---
>   WHERE cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'chromosomal_deletion';
28382c27820
< --- *** relation: complex_change_in_transcript ***
---
> --- *** relation: chromosomal_inversion ***
28385,28388d27822
< --- *** A transcript variant with a complex INDE ***
< --- *** L- Insertion or deletion that spans an e ***
< --- *** xon/intron border or a coding sequence/U ***
< --- *** TR border.                               ***
28392c27826
< CREATE VIEW complex_change_in_transcript AS
---
> CREATE VIEW chromosomal_inversion AS
28394c27828
<     feature_id AS complex_change_in_transcript_id,
---
>     feature_id AS chromosomal_inversion_id,
28398c27832
<   WHERE cvterm.name = 'complex_change_in_transcript';
---
>   WHERE cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'chromosomal_inversion';
28401c27835
< --- *** relation: stop_lost ***
---
> --- *** relation: interchromosomal_mutation ***
28404,28407d27837
< --- *** A sequence variant where at least one ba ***
< --- *** se of the terminator codon (stop) is cha ***
< --- *** nged, resulting in an elongated transcri ***
< --- *** pt.                                      ***
28411c27841
< CREATE VIEW stop_lost AS
---
> CREATE VIEW interchromosomal_mutation AS
28413c27843
<     feature_id AS stop_lost_id,
---
>     feature_id AS interchromosomal_mutation_id,
28417c27847
<   WHERE cvterm.name = 'stop_lost';
---
>   WHERE cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unorientated_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_mutation';
28420c27850
< --- *** relation: coding_sequence_variant ***
---
> --- *** relation: indel ***
28423,28424c27853,27855
< --- *** A sequence variant that changes the codi ***
< --- *** ng sequence.                             ***
---
> --- *** A hybrid term (insertion/deletion) to de ***
> --- *** scribe sequence length change when the d ***
> --- *** irection of the change is unspecified.   ***
28428c27859
< CREATE VIEW coding_sequence_variant AS
---
> CREATE VIEW indel AS
28430c27861
<     feature_id AS coding_sequence_variant_id,
---
>     feature_id AS indel_id,
28434c27865
<   WHERE cvterm.name = 'codon_variant' OR cvterm.name = 'frameshift_variant' OR cvterm.name = 'inframe_variant' OR cvterm.name = 'initiator_codon_change' OR cvterm.name = 'non_synonymous_codon' OR cvterm.name = 'synonymous_codon' OR cvterm.name = 'terminal_codon_variant' OR cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'frame_restoring_variant' OR cvterm.name = 'minus_1_frameshift_variant' OR cvterm.name = 'minus_2_frameshift_variant' OR cvterm.name = 'plus_1_frameshift_variant' OR cvterm.name = 'plus_2_frameshift variant' OR cvterm.name = 'inframe_codon_gain' OR cvterm.name = 'inframe_codon_loss' OR cvterm.name = 'coding_sequence_variant';
---
>   WHERE cvterm.name = 'nucleotide_deletion' OR cvterm.name = 'nucleotide_insertion' OR cvterm.name = 'nucleotide_duplication' OR cvterm.name = 'indel';
28437c27868
< --- *** relation: codon_variant ***
---
> --- *** relation: nucleotide_deletion ***
28440,28441c27871,27872
< --- *** A sequence variant that changes at least ***
< --- ***  one base in a codon.                    ***
---
> --- *** One or more continuous nucleotides are e ***
> --- *** xcised from the sequence.                ***
28445c27876
< CREATE VIEW codon_variant AS
---
> CREATE VIEW nucleotide_deletion AS
28447c27878
<     feature_id AS codon_variant_id,
---
>     feature_id AS nucleotide_deletion_id,
28451c27882
<   WHERE cvterm.name = 'initiator_codon_change' OR cvterm.name = 'non_synonymous_codon' OR cvterm.name = 'synonymous_codon' OR cvterm.name = 'terminal_codon_variant' OR cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'codon_variant';
---
>   WHERE cvterm.name = 'nucleotide_deletion';
28454c27885
< --- *** relation: initiator_codon_change ***
---
> --- *** relation: nucleotide_insertion ***
28457,28459c27888,27890
< --- *** A codon variant that changes at least on ***
< --- *** e base of the first codon of a transcrip ***
< --- *** t.                                       ***
---
> --- *** One or more nucleotides are added betwee ***
> --- *** n two adjacent nucleotides in the sequen ***
> --- *** ce.                                      ***
28463c27894
< CREATE VIEW initiator_codon_change AS
---
> CREATE VIEW nucleotide_insertion AS
28465c27896
<     feature_id AS initiator_codon_change_id,
---
>     feature_id AS nucleotide_insertion_id,
28469c27900
<   WHERE cvterm.name = 'initiator_codon_change';
---
>   WHERE cvterm.name = 'nucleotide_duplication' OR cvterm.name = 'nucleotide_insertion';
28472c27903
< --- *** relation: non_synonymous_codon ***
---
> --- *** relation: nucleotide_duplication ***
28475,28478c27906,27910
< --- *** A sequence variant whereby at least one  ***
< --- *** base of a codon is changed resulting in  ***
< --- *** a codon that encodes for a different ami ***
< --- *** no acid or stop codon.                   ***
---
> --- *** One or more nucleotides are added betwee ***
> --- *** n two adjacent nucleotides in the sequen ***
> --- *** ce; the inserted sequence derives from,  ***
> --- *** or is identical in sequence to, nucleoti ***
> --- *** des adjacent to insertion point.         ***
28482c27914
< CREATE VIEW non_synonymous_codon AS
---
> CREATE VIEW nucleotide_duplication AS
28484c27916
<     feature_id AS non_synonymous_codon_id,
---
>     feature_id AS nucleotide_duplication_id,
28488c27920
<   WHERE cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'non_synonymous_codon';
---
>   WHERE cvterm.name = 'nucleotide_duplication';
28491c27923
< --- *** relation: conservative_missense_codon ***
---
> --- *** relation: inversion ***
28494,28498c27926,27927
< --- *** A sequence variant whereby at least one  ***
< --- *** base of a codon is changed resulting in  ***
< --- *** a codon that encodes for a different but ***
< --- ***  similar amino acid. These variants may  ***
< --- *** or may not be deleterious.               ***
---
> --- *** A continuous nucleotide sequence is inve ***
> --- *** rted in the same position.               ***
28502c27931
< CREATE VIEW conservative_missense_codon AS
---
> CREATE VIEW inversion AS
28504c27933
<     feature_id AS conservative_missense_codon_id,
---
>     feature_id AS inversion_id,
28508c27937
<   WHERE cvterm.name = 'conservative_missense_codon';
---
>   WHERE cvterm.name = 'inversion';
28511c27940
< --- *** relation: non_conservative_missense_codon ***
---
> --- *** relation: chromosomal_duplication ***
28514,28517c27943
< --- *** A sequence variant whereby at least one  ***
< --- *** base of a codon is changed resulting in  ***
< --- *** a codon that encodes for an amino acid w ***
< --- *** ith different biochemical properties.    ***
---
> --- *** An extra chromosome.                     ***
28521c27947
< CREATE VIEW non_conservative_missense_codon AS
---
> CREATE VIEW chromosomal_duplication AS
28523c27949
<     feature_id AS non_conservative_missense_codon_id,
---
>     feature_id AS chromosomal_duplication_id,
28527c27953
<   WHERE cvterm.name = 'non_conservative_missense_codon';
---
>   WHERE cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'chromosomal_duplication';
28530c27956
< --- *** relation: stop_gained ***
---
> --- *** relation: intrachromosomal_duplication ***
28533,28536d27958
< --- *** A sequence variant whereby at least one  ***
< --- *** base of a codon is changed, resulting in ***
< --- ***  a premature stop codon, leading to a sh ***
< --- *** ortened transcript.                      ***
28540c27962
< CREATE VIEW stop_gained AS
---
> CREATE VIEW intrachromosomal_duplication AS
28542c27964
<     feature_id AS stop_gained_id,
---
>     feature_id AS intrachromosomal_duplication_id,
28546c27968
<   WHERE cvterm.name = 'stop_gained';
---
>   WHERE cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'intrachromosomal_duplication';
28549c27971
< --- *** relation: synonymous_codon ***
---
> --- *** relation: direct_tandem_duplication ***
28552,28554d27973
< --- *** A sequence variant whereby a base of a c ***
< --- *** odon is changed, but there is no resulti ***
< --- *** ng change to the encoded amino acid.     ***
28558c27977
< CREATE VIEW synonymous_codon AS
---
> CREATE VIEW direct_tandem_duplication AS
28560c27979
<     feature_id AS synonymous_codon_id,
---
>     feature_id AS direct_tandem_duplication_id,
28564c27983
<   WHERE cvterm.name = 'synonymous_codon';
---
>   WHERE cvterm.name = 'direct_tandem_duplication';
28567c27986
< --- *** relation: frameshift_variant ***
---
> --- *** relation: inverted_tandem_duplication ***
28570,28574d27988
< --- *** A sequence variant which causes a disrup ***
< --- *** tion of the translational reading frame, ***
< --- ***  because the number of nucleotides inser ***
< --- *** ted or deleted is not a multiple of thre ***
< --- *** e.                                       ***
28578c27992
< CREATE VIEW frameshift_variant AS
---
> CREATE VIEW inverted_tandem_duplication AS
28580c27994
<     feature_id AS frameshift_variant_id,
---
>     feature_id AS inverted_tandem_duplication_id,
28584c27998
<   WHERE cvterm.name = 'frame_restoring_variant' OR cvterm.name = 'minus_1_frameshift_variant' OR cvterm.name = 'minus_2_frameshift_variant' OR cvterm.name = 'plus_1_frameshift_variant' OR cvterm.name = 'plus_2_frameshift variant' OR cvterm.name = 'frameshift_variant';
---
>   WHERE cvterm.name = 'inverted_tandem_duplication';
28587c28001
< --- *** relation: terminator_codon_variant ***
---
> --- *** relation: intrachromosomal_transposition ***
28590,28592d28003
< --- *** A sequence variant whereby at least one  ***
< --- *** of the bases in the terminator codon is  ***
< --- *** changed.                                 ***
28596c28007
< CREATE VIEW terminator_codon_variant AS
---
> CREATE VIEW intrachromosomal_transposition AS
28598c28009
<     feature_id AS terminator_codon_variant_id,
---
>     feature_id AS intrachromosomal_transposition_id,
28602c28013
<   WHERE cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'terminator_codon_variant';
---
>   WHERE cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'intrachromosomal_transposition';
28605c28016
< --- *** relation: frame_restoring_variant ***
---
> --- *** relation: compound_chromosome ***
28608,28610d28018
< --- *** A sequence variant that reverts the sequ ***
< --- *** ence of a previous frameshift mutation b ***
< --- *** ack to the initial frame.                ***
28614c28022
< CREATE VIEW frame_restoring_variant AS
---
> CREATE VIEW compound_chromosome AS
28616c28024
<     feature_id AS frame_restoring_variant_id,
---
>     feature_id AS compound_chromosome_id,
28620c28028
<   WHERE cvterm.name = 'frame_restoring_variant';
---
>   WHERE cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'compound_chromosome';
28623c28031
< --- *** relation: minus_1_frameshift_variant ***
---
> --- *** relation: robertsonian_fusion ***
28626,28628d28033
< --- *** A sequence variant which causes a disrup ***
< --- *** tion of the translational reading frame, ***
< --- ***  by shifting one base ahead.             ***
28632c28037
< CREATE VIEW minus_1_frameshift_variant AS
---
> CREATE VIEW robertsonian_fusion AS
28634c28039
<     feature_id AS minus_1_frameshift_variant_id,
---
>     feature_id AS robertsonian_fusion_id,
28638c28043
<   WHERE cvterm.name = 'minus_1_frameshift_variant';
---
>   WHERE cvterm.name = 'Robertsonian_fusion';
28641c28046
< --- *** relation: minus_2_frameshift_variant ***
---
> --- *** relation: chromosomal_translocation ***
28647c28052
< CREATE VIEW minus_2_frameshift_variant AS
---
> CREATE VIEW chromosomal_translocation AS
28649c28054
<     feature_id AS minus_2_frameshift_variant_id,
---
>     feature_id AS chromosomal_translocation_id,
28653c28058
<   WHERE cvterm.name = 'minus_2_frameshift_variant';
---
>   WHERE cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'chromosomal_translocation';
28656c28061
< --- *** relation: plus_1_frameshift_variant ***
---
> --- *** relation: ring_chromosome ***
28659,28661d28063
< --- *** A sequence variant which causes a disrup ***
< --- *** tion of the translational reading frame, ***
< --- ***  by shifting one base backward.          ***
28665c28067
< CREATE VIEW plus_1_frameshift_variant AS
---
> CREATE VIEW ring_chromosome AS
28667c28069
<     feature_id AS plus_1_frameshift_variant_id,
---
>     feature_id AS ring_chromosome_id,
28671c28073
<   WHERE cvterm.name = 'plus_1_frameshift_variant';
---
>   WHERE cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'ring_chromosome';
28674c28076
< --- *** relation: plus_2_frameshift_variant ***
---
> --- *** relation: pericentric_inversion ***
28680c28082
< CREATE VIEW plus_2_frameshift_variant AS
---
> CREATE VIEW pericentric_inversion AS
28682c28084
<     feature_id AS plus_2_frameshift_variant_id,
---
>     feature_id AS pericentric_inversion_id,
28686c28088
<   WHERE cvterm.name = 'plus_2_frameshift variant';
---
>   WHERE cvterm.name = 'pericentric_inversion';
28689c28091
< --- *** relation: transcript_secondary_structure_variant ***
---
> --- *** relation: paracentric_inversion ***
28692,28694d28093
< --- *** A sequence variant within a transcript t ***
< --- *** hat changes the secondary structure of t ***
< --- *** he RNA product.                          ***
28698c28097
< CREATE VIEW transcript_secondary_structure_variant AS
---
> CREATE VIEW paracentric_inversion AS
28700c28099
<     feature_id AS transcript_secondary_structure_variant_id,
---
>     feature_id AS paracentric_inversion_id,
28704c28103
<   WHERE cvterm.name = 'compensatory_transcript_secondary_structure_variant' OR cvterm.name = 'transcript_secondary_structure_variant';
---
>   WHERE cvterm.name = 'paracentric_inversion';
28707c28106
< --- *** relation: compensatory_transcript_secondary_structure_variant ***
---
> --- *** relation: reciprocal_chromosomal_translocation ***
28710,28712d28108
< --- *** A secondary structure variant that compe ***
< --- *** nsate for the change made by a previous  ***
< --- *** variant.                                 ***
28716c28112
< CREATE VIEW compensatory_transcript_secondary_structure_variant AS
---
> CREATE VIEW reciprocal_chromosomal_translocation AS
28718c28114
<     feature_id AS compensatory_transcript_secondary_structure_variant_id,
---
>     feature_id AS reciprocal_chromosomal_translocation_id,
28722c28118
<   WHERE cvterm.name = 'compensatory_transcript_secondary_structure_variant';
---
>   WHERE cvterm.name = 'reciprocal_chromosomal_translocation';
28725c28121
< --- *** relation: translational_product_structure_variant ***
---
> --- *** relation: sequence_variation_affecting_transcript ***
28728,28730c28124,28126
< --- *** A sequence variant within the transcript ***
< --- ***  that changes the structure of the trans ***
< --- *** lational product.                        ***
---
> --- *** Any change in mature, spliced and proces ***
> --- *** sed, RNA that results from a change in t ***
> --- *** he corresponding DNA sequence.           ***
28734c28130
< CREATE VIEW translational_product_structure_variant AS
---
> CREATE VIEW sequence_variation_affecting_transcript AS
28736c28132
<     feature_id AS translational_product_structure_variant_id,
---
>     feature_id AS sequence_variation_affecting_transcript_id,
28740c28136
<   WHERE cvterm.name = '3D_polypeptide_structure_variant' OR cvterm.name = 'complex_change_of_translational_product_variant' OR cvterm.name = 'polypeptide_sequence_variant' OR cvterm.name = 'complex_3D_structural_variant' OR cvterm.name = 'conformational_change_variant' OR cvterm.name = 'amino_acid_deletion' OR cvterm.name = 'amino_acid_insertion' OR cvterm.name = 'amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide' OR cvterm.name = 'polypeptide_fusion' OR cvterm.name = 'polypeptide_truncation' OR cvterm.name = 'conservative_amino_acid_substitution' OR cvterm.name = 'non_conservative_amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide_C_terminal' OR cvterm.name = 'elongated_polypeptide_N_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal' OR cvterm.name = 'translational_product_structure_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_no_change_in_transcript' OR cvterm.name = 'sequence_variation_affecting_complex_change_in_transcript' OR cvterm.name = 'sequence_variant_affecting_transcription' OR cvterm.name = 'sequence_variation_affecting_transcript_sequence' OR cvterm.name = 'sequence_variation_affecting_level_of_transcript' OR cvterm.name = 'sequence_variant_causing_uncharacterised_change_in_transcript' OR cvterm.name = 'sequence_variant_affecting_rate_of_transcription' OR cvterm.name = 'sequence_variant_decreasing_rate_of_transcription' OR cvterm.name = 'sequence_variant_increasing_rate_of_transcription' OR cvterm.name = 'sequence_variation_affecting_coding_sequence' OR cvterm.name = 'sequence_variant_affecting_transcript_processing' OR cvterm.name = 'sequence variant_affecting_transcript_stability' OR cvterm.name = 'sequence_variant_affecting_transcript_secondary_structure' OR cvterm.name = 'sequence_variant_causing_amino_acid_coding_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_terminator_codon_change_in_transcript' OR cvterm.name = 'sequence_variation_affecting_reading_frame' OR cvterm.name = 'sequence_variant_causing_initiator_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_non_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonsense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript' OR cvterm.name = 'frameshift_sequence_variation' OR cvterm.name = 'sequence_variant_causing_plus_1_frameshift_mutation' OR cvterm.name = 'sequence_variant_causing_minus_1_frameshift' OR cvterm.name = 'sequence_variant_causing_plus_2_frameshift' OR cvterm.name = 'sequence_variant_causing_minus_2_frameshift' OR cvterm.name = 'frame_restoring_sequence_variant' OR cvterm.name = 'sequence_variant_affecting_polyadenylation' OR cvterm.name = 'sequence_variant_affecting_editing' OR cvterm.name = 'sequence_variant_increasing_transcript_stability' OR cvterm.name = 'sequence_variant_decreasing_transcript_stability' OR cvterm.name = 'sequence_variant_causing_compensatory_transcript_secondary_structure_mutation' OR cvterm.name = 'sequence_variation_decreasing_level_of_transcript' OR cvterm.name = 'sequence_variation_increasing_level_of_transcript' OR cvterm.name = 'sequence_variant_causing_partially_characterised_change_in_transcript' OR cvterm.name = 'sequence_variation_affecting_transcript';
28743c28139
< --- *** relation: threed_polypeptide_structure_variant ***
---
> --- *** relation: sequence_variant_causing_no_change_in_transcript ***
28746,28747c28142
< --- *** A sequence variant that changes the resu ***
< --- *** lting polypeptide structure.             ***
---
> --- *** No effect on the state of the RNA.       ***
28751c28146
< CREATE VIEW threed_polypeptide_structure_variant AS
---
> CREATE VIEW sequence_variant_causing_no_change_in_transcript AS
28753c28148
<     feature_id AS threed_polypeptide_structure_variant_id,
---
>     feature_id AS sequence_variant_causing_no_change_in_transcript_id,
28757c28152
<   WHERE cvterm.name = 'complex_3D_structural_variant' OR cvterm.name = 'conformational_change_variant' OR cvterm.name = '3D_polypeptide_structure_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_no_change_in_transcript';
28760c28155
< --- *** relation: complex_3d_structural_variant ***
---
> --- *** relation: sequence_variation_affecting_complex_change_in_transcript ***
28763,28764d28157
< --- *** A sequence variant that changes the resu ***
< --- *** lting polypeptide structure.             ***
28768c28161
< CREATE VIEW complex_3d_structural_variant AS
---
> CREATE VIEW sequence_variation_affecting_complex_change_in_transcript AS
28770c28163
<     feature_id AS complex_3d_structural_variant_id,
---
>     feature_id AS sequence_variation_affecting_complex_change_in_transcript_id,
28774c28167
<   WHERE cvterm.name = 'complex_3D_structural_variant';
---
>   WHERE cvterm.name = 'sequence_variation_affecting_complex_change_in_transcript';
28777c28170
< --- *** relation: conformational_change_variant ***
---
> --- *** relation: sequence_variation_affecting_coding_sequence ***
28780,28782c28173,28175
< --- *** A sequence variant in the CDS region tha ***
< --- *** t causes a conformational change in the  ***
< --- *** resulting polypeptide sequence.          ***
---
> --- *** Any of the amino acid coding triplets of ***
> --- ***  a gene are affected by the DNA mutation ***
> --- *** .                                        ***
28786c28179
< CREATE VIEW conformational_change_variant AS
---
> CREATE VIEW sequence_variation_affecting_coding_sequence AS
28788c28181
<     feature_id AS conformational_change_variant_id,
---
>     feature_id AS sequence_variation_affecting_coding_sequence_id,
28792c28185
<   WHERE cvterm.name = 'conformational_change_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_amino_acid_coding_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_terminator_codon_change_in_transcript' OR cvterm.name = 'sequence_variation_affecting_reading_frame' OR cvterm.name = 'sequence_variant_causing_initiator_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_non_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonsense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript' OR cvterm.name = 'frameshift_sequence_variation' OR cvterm.name = 'sequence_variant_causing_plus_1_frameshift_mutation' OR cvterm.name = 'sequence_variant_causing_minus_1_frameshift' OR cvterm.name = 'sequence_variant_causing_plus_2_frameshift' OR cvterm.name = 'sequence_variant_causing_minus_2_frameshift' OR cvterm.name = 'frame_restoring_sequence_variant' OR cvterm.name = 'sequence_variation_affecting_coding_sequence';
28795c28188
< --- *** relation: complex_change_of_translational_product_variant ***
---
> --- *** relation: sequence_variant_causing_initiator_codon_change_in_trans ***
28797a28191,28194
> --- *** The DNA mutation changes, usually destro ***
> --- *** ys, the first coding triplet of a gene.  ***
> --- *** Usually prevents translation although an ***
> --- *** other initiator codon may be used.       ***
28801c28198
< CREATE VIEW complex_change_of_translational_product_variant AS
---
> CREATE VIEW sequence_variant_causing_initiator_codon_change_in_trans AS
28803c28200
<     feature_id AS complex_change_of_translational_product_variant_id,
---
>     feature_id AS sequence_variant_causing_initiator_codon_change_in_trans_id,
28807c28204
<   WHERE cvterm.name = 'complex_change_of_translational_product_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_initiator_codon_change_in_transcript';
28810c28207
< --- *** relation: polypeptide_sequence_variant ***
---
> --- *** relation: seq_variant_causing_amino_acid_coding_codon_change_in_trans ***
28813,28815c28210,28213
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes a change in the resulting polypep ***
< --- *** tide sequence.                           ***
---
> --- *** The DNA mutation affects the amino acid  ***
> --- *** coding sequence of a gene; this region i ***
> --- *** ncludes both the initiator and terminato ***
> --- *** r codons.                                ***
28819c28217
< CREATE VIEW polypeptide_sequence_variant AS
---
> CREATE VIEW seq_variant_causing_amino_acid_coding_codon_change_in_trans AS
28821c28219
<     feature_id AS polypeptide_sequence_variant_id,
---
>     feature_id AS seq_variant_causing_amino_acid_coding_codon_change_in_trans_id,
28825c28223
<   WHERE cvterm.name = 'amino_acid_deletion' OR cvterm.name = 'amino_acid_insertion' OR cvterm.name = 'amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide' OR cvterm.name = 'polypeptide_fusion' OR cvterm.name = 'polypeptide_truncation' OR cvterm.name = 'conservative_amino_acid_substitution' OR cvterm.name = 'non_conservative_amino_acid_substitution' OR cvterm.name = 'elongated_polypeptide_C_terminal' OR cvterm.name = 'elongated_polypeptide_N_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal' OR cvterm.name = 'polypeptide_sequence_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_initiator_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_non_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonsense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_amino_acid_coding_codon_change_in_transcript';
28828c28226
< --- *** relation: amino_acid_deletion ***
---
> --- *** relation: seq_variant_causing_synonymous_codon_change_in_trans ***
28831,28833c28229,28230
< --- *** A sequence variant within a CDS resultin ***
< --- *** g in the loss of an amino acid from the  ***
< --- *** resulting polypeptide.                   ***
---
> --- *** The changed codon has the same translati ***
> --- *** on product as the original codon.        ***
28837c28234
< CREATE VIEW amino_acid_deletion AS
---
> CREATE VIEW seq_variant_causing_synonymous_codon_change_in_trans AS
28839c28236
<     feature_id AS amino_acid_deletion_id,
---
>     feature_id AS seq_variant_causing_synonymous_codon_change_in_trans_id,
28843c28240
<   WHERE cvterm.name = 'amino_acid_deletion';
---
>   WHERE cvterm.name = 'sequence_variant_causing_synonymous_codon_change_in_transcript';
28846c28243
< --- *** relation: amino_acid_insertion ***
---
> --- *** relation: seq_variant_causing_non_synonymous_codon_change_in_trans ***
28849,28851c28246,28247
< --- *** A sequence variant within a CDS resultin ***
< --- *** g in the gain of an amino acid to the re ***
< --- *** sulting polypeptide.                     ***
---
> --- *** A DNA point mutation that causes a subst ***
> --- *** itution of an amino acid by an other.    ***
28855c28251
< CREATE VIEW amino_acid_insertion AS
---
> CREATE VIEW seq_variant_causing_non_synonymous_codon_change_in_trans AS
28857c28253
<     feature_id AS amino_acid_insertion_id,
---
>     feature_id AS seq_variant_causing_non_synonymous_codon_change_in_trans_id,
28861c28257
<   WHERE cvterm.name = 'amino_acid_insertion';
---
>   WHERE cvterm.name = 'sequence_variant_causing_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_non_synonymous_codon_change_in_transcript';
28864c28260
< --- *** relation: amino_acid_substitution ***
---
> --- *** relation: sequence_variant_causing_missense_codon_change_in_transcript ***
28867,28869c28263,28265
< --- *** A sequence variant of a codon resulting  ***
< --- *** in the substitution of one amino acid fo ***
< --- *** r another in the resulting polypeptide.  ***
---
> --- *** The nucleotide change in the codon leads ***
> --- ***  to a new codon coding for a new amino a ***
> --- *** cid.                                     ***
28873c28269
< CREATE VIEW amino_acid_substitution AS
---
> CREATE VIEW sequence_variant_causing_missense_codon_change_in_transcript AS
28875c28271
<     feature_id AS amino_acid_substitution_id,
---
>     feature_id AS sequence_variant_causing_missense_codon_change_in_transcript_id,
28879c28275
<   WHERE cvterm.name = 'conservative_amino_acid_substitution' OR cvterm.name = 'non_conservative_amino_acid_substitution' OR cvterm.name = 'amino_acid_substitution';
---
>   WHERE cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_missense_codon_change_in_transcript';
28882c28278
< --- *** relation: conservative_amino_acid_substitution ***
---
> --- *** relation: seq_var_causing_conservative_missense_codon_change_in_trans ***
28885,28887c28281,28284
< --- *** A sequence variant of a codon causing th ***
< --- *** e substitution of a similar amino acid f ***
< --- *** or another in the resulting polypeptide. ***
---
> --- *** The amino acid change following from the ***
> --- ***  codon change does not change the gross  ***
> --- *** properties (size, charge, hydrophobicity ***
> --- *** ) of the amino acid at that position.    ***
28891c28288
< CREATE VIEW conservative_amino_acid_substitution AS
---
> CREATE VIEW seq_var_causing_conservative_missense_codon_change_in_trans AS
28893c28290
<     feature_id AS conservative_amino_acid_substitution_id,
---
>     feature_id AS seq_var_causing_conservative_missense_codon_change_in_trans_id,
28897c28294
<   WHERE cvterm.name = 'conservative_amino_acid_substitution';
---
>   WHERE cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript';
28900c28297
< --- *** relation: non_conservative_amino_acid_substitution ***
---
> --- *** relation: seq_var_causing_nonconserv_missense_codon_change_in_trans ***
28903,28906c28300,28303
< --- *** A sequence variant of a codon causing th ***
< --- *** e substitution of a non conservative ami ***
< --- *** no acid for another in the resulting pol ***
< --- *** ypeptide.                                ***
---
> --- *** The amino acid change following from the ***
> --- ***  codon change changes the gross properti ***
> --- *** es (size, charge, hydrophobicity) of the ***
> --- ***  amino acid in that position.            ***
28910c28307
< CREATE VIEW non_conservative_amino_acid_substitution AS
---
> CREATE VIEW seq_var_causing_nonconserv_missense_codon_change_in_trans AS
28912c28309
<     feature_id AS non_conservative_amino_acid_substitution_id,
---
>     feature_id AS seq_var_causing_nonconserv_missense_codon_change_in_trans_id,
28916c28313
<   WHERE cvterm.name = 'non_conservative_amino_acid_substitution';
---
>   WHERE cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript';
28919c28316
< --- *** relation: elongated_polypeptide ***
---
> --- *** relation: sequence_variant_causing_nonsense_codon_change_in_transcript ***
28922,28924c28319,28320
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes elongation of the resulting polyp ***
< --- *** eptide sequence.                         ***
---
> --- *** The nucleotide change in the codon tripl ***
> --- *** et creates a terminator codon.           ***
28928c28324
< CREATE VIEW elongated_polypeptide AS
---
> CREATE VIEW sequence_variant_causing_nonsense_codon_change_in_transcript AS
28930c28326
<     feature_id AS elongated_polypeptide_id,
---
>     feature_id AS sequence_variant_causing_nonsense_codon_change_in_transcript_id,
28934c28330
<   WHERE cvterm.name = 'elongated_polypeptide_C_terminal' OR cvterm.name = 'elongated_polypeptide_N_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal' OR cvterm.name = 'elongated_polypeptide';
---
>   WHERE cvterm.name = 'sequence_variant_causing_nonsense_codon_change_in_transcript';
28937c28333
< --- *** relation: elongated_polypeptide_c_terminal ***
---
> --- *** relation: sequence_variant_causing_terminator_codon_change_in_trans ***
28940,28942c28336,28338
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes elongation of the resulting polyp ***
< --- *** eptide sequence at the C terminus.       ***
---
> --- *** The nucleotide change in the codon tripl ***
> --- *** et changes the stop codon, causing an el ***
> --- *** ongated transcript sequence.             ***
28946c28342
< CREATE VIEW elongated_polypeptide_c_terminal AS
---
> CREATE VIEW sequence_variant_causing_terminator_codon_change_in_trans AS
28948c28344
<     feature_id AS elongated_polypeptide_c_terminal_id,
---
>     feature_id AS sequence_variant_causing_terminator_codon_change_in_trans_id,
28952c28348
<   WHERE cvterm.name = 'elongated_in_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal' OR cvterm.name = 'elongated_polypeptide_C_terminal';
---
>   WHERE cvterm.name = 'sequence_variant_causing_terminator_codon_change_in_transcript';
28955c28351
< --- *** relation: elongated_polypeptide_n_terminal ***
---
> --- *** relation: sequence_variation_affecting_reading_frame ***
28958,28960c28354,28356
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes elongation of the resulting polyp ***
< --- *** eptide sequence at the N terminus.       ***
---
> --- *** An umbrella term for terms describing an ***
> --- ***  effect of a sequence variation on the f ***
> --- *** rame of translation.                     ***
28964c28360
< CREATE VIEW elongated_polypeptide_n_terminal AS
---
> CREATE VIEW sequence_variation_affecting_reading_frame AS
28966c28362
<     feature_id AS elongated_polypeptide_n_terminal_id,
---
>     feature_id AS sequence_variation_affecting_reading_frame_id,
28970c28366
<   WHERE cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal' OR cvterm.name = 'elongated_polypeptide_N_terminal';
---
>   WHERE cvterm.name = 'frameshift_sequence_variation' OR cvterm.name = 'sequence_variant_causing_plus_1_frameshift_mutation' OR cvterm.name = 'sequence_variant_causing_minus_1_frameshift' OR cvterm.name = 'sequence_variant_causing_plus_2_frameshift' OR cvterm.name = 'sequence_variant_causing_minus_2_frameshift' OR cvterm.name = 'frame_restoring_sequence_variant' OR cvterm.name = 'sequence_variation_affecting_reading_frame';
28973c28369
< --- *** relation: elongated_in_frame_polypeptide_c_terminal ***
---
> --- *** relation: frameshift_sequence_variation ***
28976,28979c28372,28375
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes in frame elongation of the result ***
< --- *** ing polypeptide sequence at the C termin ***
< --- *** us.                                      ***
---
> --- *** A mutation causing a disruption of the t ***
> --- *** ranslational reading frame, because the  ***
> --- *** number of nucleotides inserted or delete ***
> --- *** d is not a multiple of three.            ***
28983c28379
< CREATE VIEW elongated_in_frame_polypeptide_c_terminal AS
---
> CREATE VIEW frameshift_sequence_variation AS
28985c28381
<     feature_id AS elongated_in_frame_polypeptide_c_terminal_id,
---
>     feature_id AS frameshift_sequence_variation_id,
28989c28385
<   WHERE cvterm.name = 'elongated_in_frame_polypeptide_C_terminal';
---
>   WHERE cvterm.name = 'sequence_variant_causing_plus_1_frameshift_mutation' OR cvterm.name = 'sequence_variant_causing_minus_1_frameshift' OR cvterm.name = 'sequence_variant_causing_plus_2_frameshift' OR cvterm.name = 'sequence_variant_causing_minus_2_frameshift' OR cvterm.name = 'frame_restoring_sequence_variant' OR cvterm.name = 'frameshift_sequence_variation';
28992c28388
< --- *** relation: elongated_out_of_frame_polypeptide_c_terminal ***
---
> --- *** relation: sequence_variant_causing_plus_1_frameshift_mutation ***
28995,28998c28391,28393
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes out of frame elongation of the re ***
< --- *** sulting polypeptide sequence at the C te ***
< --- *** rminus.                                  ***
---
> --- *** A mutation causing a disruption of the t ***
> --- *** ranslational reading frame, due to the i ***
> --- *** nsertion of a nucleotide.                ***
29002c28397
< CREATE VIEW elongated_out_of_frame_polypeptide_c_terminal AS
---
> CREATE VIEW sequence_variant_causing_plus_1_frameshift_mutation AS
29004c28399
<     feature_id AS elongated_out_of_frame_polypeptide_c_terminal_id,
---
>     feature_id AS sequence_variant_causing_plus_1_frameshift_mutation_id,
29008c28403
<   WHERE cvterm.name = 'elongated_out_of_frame_polypeptide_C_terminal';
---
>   WHERE cvterm.name = 'sequence_variant_causing_plus_1_frameshift_mutation';
29011c28406
< --- *** relation: elongated_in_frame_polypeptide_n_terminal_elongation ***
---
> --- *** relation: sequence_variant_causing_minus_1_frameshift ***
29014,29017c28409,28411
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes in frame elongation of the result ***
< --- *** ing polypeptide sequence at the N termin ***
< --- *** us.                                      ***
---
> --- *** A mutation causing a disruption of the t ***
> --- *** ranslational reading frame, due to the d ***
> --- *** eletion of a nucleotide.                 ***
29021c28415
< CREATE VIEW elongated_in_frame_polypeptide_n_terminal_elongation AS
---
> CREATE VIEW sequence_variant_causing_minus_1_frameshift AS
29023c28417
<     feature_id AS elongated_in_frame_polypeptide_n_terminal_elongation_id,
---
>     feature_id AS sequence_variant_causing_minus_1_frameshift_id,
29027c28421
<   WHERE cvterm.name = 'elongated_in_frame_polypeptide_N_terminal_elongation';
---
>   WHERE cvterm.name = 'sequence_variant_causing_minus_1_frameshift';
29030c28424
< --- *** relation: elongated_out_of_frame_polypeptide_n_terminal ***
---
> --- *** relation: sequence_variant_causing_plus_2_frameshift ***
29033,29036c28427,28429
< --- *** A sequence variant with in the CDS that  ***
< --- *** causes out of frame elongation of the re ***
< --- *** sulting polypeptide sequence at the N te ***
< --- *** rminus.                                  ***
---
> --- *** A mutation causing a disruption of the t ***
> --- *** ranslational reading frame, due to the i ***
> --- *** nsertion of two nucleotides.             ***
29040c28433
< CREATE VIEW elongated_out_of_frame_polypeptide_n_terminal AS
---
> CREATE VIEW sequence_variant_causing_plus_2_frameshift AS
29042c28435
<     feature_id AS elongated_out_of_frame_polypeptide_n_terminal_id,
---
>     feature_id AS sequence_variant_causing_plus_2_frameshift_id,
29046c28439
<   WHERE cvterm.name = 'elongated_out_of_frame_polypeptide_N_terminal';
---
>   WHERE cvterm.name = 'sequence_variant_causing_plus_2_frameshift';
29049c28442
< --- *** relation: polypeptide_fusion ***
---
> --- *** relation: sequence_variant_causing_minus_2_frameshift ***
29052,29053c28445,28447
< --- *** A sequence variant that causes a fusion  ***
< --- *** of two polypeptide sequences.            ***
---
> --- *** A mutation causing a disruption of the t ***
> --- *** ranslational reading frame, due to the d ***
> --- *** eletion of two nucleotides.              ***
29057c28451
< CREATE VIEW polypeptide_fusion AS
---
> CREATE VIEW sequence_variant_causing_minus_2_frameshift AS
29059c28453
<     feature_id AS polypeptide_fusion_id,
---
>     feature_id AS sequence_variant_causing_minus_2_frameshift_id,
29063c28457
<   WHERE cvterm.name = 'polypeptide_fusion';
---
>   WHERE cvterm.name = 'sequence_variant_causing_minus_2_frameshift';
29066c28460
< --- *** relation: polypeptide_truncation ***
---
> --- *** relation: sequence_variant_affecting_transcript_processing ***
29069,29071c28463,28466
< --- *** A sequence variant of the CD that causes ***
< --- ***  a truncation of the resulting polypepti ***
< --- *** de.                                      ***
---
> --- *** Sequence variant affects the way in whic ***
> --- *** h the primary transcriptional product is ***
> --- ***  processed to form the mature transcript ***
> --- *** .                                        ***
29075c28470
< CREATE VIEW polypeptide_truncation AS
---
> CREATE VIEW sequence_variant_affecting_transcript_processing AS
29077c28472
<     feature_id AS polypeptide_truncation_id,
---
>     feature_id AS sequence_variant_affecting_transcript_processing_id,
29081c28476
<   WHERE cvterm.name = 'polypeptide_truncation';
---
>   WHERE cvterm.name = 'sequence_variant_affecting_polyadenylation' OR cvterm.name = 'sequence_variant_affecting_editing' OR cvterm.name = 'sequence_variant_affecting_transcript_processing';
29084c28479
< --- *** relation: inactive_catalytic_site ***
---
> --- *** relation: sequence_variant_affecting_splicing ***
29087,29089c28482,28486
< --- *** A sequence variant that causes the inact ***
< --- *** ivation of a catalytic site with respect ***
< --- ***  to a reference sequence.                ***
---
> --- *** A sequence_variant_effect where the way  ***
> --- *** in which the primary transcriptional pro ***
> --- *** duct is processed to form the mature tra ***
> --- *** nscript, specifically by the removal (sp ***
> --- *** licing) of intron sequences is changed.  ***
29093c28490
< CREATE VIEW inactive_catalytic_site AS
---
> CREATE VIEW sequence_variant_affecting_splicing AS
29095c28492
<     feature_id AS inactive_catalytic_site_id,
---
>     feature_id AS sequence_variant_affecting_splicing_id,
29099c28496
<   WHERE cvterm.name = 'inactive_catalytic_site';
---
>   WHERE cvterm.name = 'sequence_variant_affecting_splice_donor' OR cvterm.name = 'sequence_variant_affecting_splice_acceptor' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_activation' OR cvterm.name = 'sequence_variant_causes_exon_loss' OR cvterm.name = 'sequence_variant_causes_intron_gain' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_donor_activation' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_acceptor_activation' OR cvterm.name = 'sequence_variant_affecting_splicing';
29102c28499
< --- *** relation: nc_transcript_variant ***
---
> --- *** relation: sequence_variant_affecting_splice_donor ***
29105,29106c28502,28503
< --- *** A transcript variant of a non coding RNA ***
< --- ***  gene.                                   ***
---
> --- *** A sequence_variant_effect that changes t ***
> --- *** he splice donor sequence.                ***
29110c28507
< CREATE VIEW nc_transcript_variant AS
---
> CREATE VIEW sequence_variant_affecting_splice_donor AS
29112c28509
<     feature_id AS nc_transcript_variant_id,
---
>     feature_id AS sequence_variant_affecting_splice_donor_id,
29116c28513
<   WHERE cvterm.name = 'mature_miRNA_variant' OR cvterm.name = 'nc_transcript_variant';
---
>   WHERE cvterm.name = 'sequence_variant_affecting_splice_donor';
29119c28516
< --- *** relation: mature_mirna_variant ***
---
> --- *** relation: sequence_variant_affecting_splice_acceptor ***
29122,29123c28519,28520
< --- *** A transcript variant located with the se ***
< --- *** quence of the mature miRNA.              ***
---
> --- *** A sequence_variant_effect that changes t ***
> --- *** he splice acceptor sequence.             ***
29127c28524
< CREATE VIEW mature_mirna_variant AS
---
> CREATE VIEW sequence_variant_affecting_splice_acceptor AS
29129c28526
<     feature_id AS mature_mirna_variant_id,
---
>     feature_id AS sequence_variant_affecting_splice_acceptor_id,
29133c28530
<   WHERE cvterm.name = 'mature_miRNA_variant';
---
>   WHERE cvterm.name = 'sequence_variant_affecting_splice_acceptor';
29136c28533
< --- *** relation: nmd_transcript_variant ***
---
> --- *** relation: sequence_variant_causing_cryptic_splice_activation ***
29139,29140c28536,28537
< --- *** A variant in a transcript that is the ta ***
< --- *** rget of NMD.                             ***
---
> --- *** A sequence variant causing a new (functi ***
> --- *** onal) splice site.                       ***
29144c28541
< CREATE VIEW nmd_transcript_variant AS
---
> CREATE VIEW sequence_variant_causing_cryptic_splice_activation AS
29146c28543
<     feature_id AS nmd_transcript_variant_id,
---
>     feature_id AS sequence_variant_causing_cryptic_splice_activation_id,
29150c28547
<   WHERE cvterm.name = 'NMD_transcript_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_cryptic_splice_donor_activation' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_acceptor_activation' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_activation';
29153c28550
< --- *** relation: utr_variant ***
---
> --- *** relation: sequence_variant_affecting_editing ***
29156,29157c28553,28554
< --- *** A transcript variant that is located wit ***
< --- *** hin the UTR.                             ***
---
> --- *** Sequence variant affects the editing of  ***
> --- *** the transcript.                          ***
29161c28558
< CREATE VIEW utr_variant AS
---
> CREATE VIEW sequence_variant_affecting_editing AS
29163c28560
<     feature_id AS utr_variant_id,
---
>     feature_id AS sequence_variant_affecting_editing_id,
29167c28564
<   WHERE cvterm.name = '5_prime_UTR_variant' OR cvterm.name = '3_prime_UTR_variant' OR cvterm.name = 'UTR_variant';
---
>   WHERE cvterm.name = 'sequence_variant_affecting_editing';
29170c28567
< --- *** relation: five_prime_utr_variant ***
---
> --- *** relation: sequence_variant_affecting_transcription ***
29173c28570,28572
< --- *** A UTR variant of the 5' UTR.             ***
---
> --- *** Mutation affects the process of transcri ***
> --- *** ption, its initiation, progression or te ***
> --- *** rmination.                               ***
29177c28576
< CREATE VIEW five_prime_utr_variant AS
---
> CREATE VIEW sequence_variant_affecting_transcription AS
29179c28578
<     feature_id AS five_prime_utr_variant_id,
---
>     feature_id AS sequence_variant_affecting_transcription_id,
29183c28582
<   WHERE cvterm.name = '5_prime_UTR_variant';
---
>   WHERE cvterm.name = 'sequence_variant_affecting_rate_of_transcription' OR cvterm.name = 'sequence_variant_decreasing_rate_of_transcription' OR cvterm.name = 'sequence_variant_increasing_rate_of_transcription' OR cvterm.name = 'sequence_variant_affecting_transcription';
29186c28585
< --- *** relation: three_prime_utr_variant ***
---
> --- *** relation: sequence_variant_decreasing_rate_of_transcription ***
29189c28588,28590
< --- *** A UTR variant of the 3' UTR.             ***
---
> --- *** A sequence variation that decreases the  ***
> --- *** rate a which transcription of the sequen ***
> --- *** ce occurs.                               ***
29193c28594
< CREATE VIEW three_prime_utr_variant AS
---
> CREATE VIEW sequence_variant_decreasing_rate_of_transcription AS
29195c28596
<     feature_id AS three_prime_utr_variant_id,
---
>     feature_id AS sequence_variant_decreasing_rate_of_transcription_id,
29199c28600
<   WHERE cvterm.name = '3_prime_UTR_variant';
---
>   WHERE cvterm.name = 'sequence_variant_decreasing_rate_of_transcription';
29202c28603
< --- *** relation: terminal_codon_variant ***
---
> --- *** relation: sequence_variation_affecting_transcript_sequence ***
29205,29207d28605
< --- *** A codon variant that changes at least on ***
< --- *** e base of the last codon of the transcri ***
< --- *** pt.                                      ***
29211c28609
< CREATE VIEW terminal_codon_variant AS
---
> CREATE VIEW sequence_variation_affecting_transcript_sequence AS
29213c28611
<     feature_id AS terminal_codon_variant_id,
---
>     feature_id AS sequence_variation_affecting_transcript_sequence_id,
29217c28615
<   WHERE cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'terminal_codon_variant';
---
>   WHERE cvterm.name = 'sequence_variation_affecting_coding_sequence' OR cvterm.name = 'sequence_variant_affecting_transcript_processing' OR cvterm.name = 'sequence variant_affecting_transcript_stability' OR cvterm.name = 'sequence_variant_affecting_transcript_secondary_structure' OR cvterm.name = 'sequence_variant_causing_amino_acid_coding_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_terminator_codon_change_in_transcript' OR cvterm.name = 'sequence_variation_affecting_reading_frame' OR cvterm.name = 'sequence_variant_causing_initiator_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_non_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonsense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript' OR cvterm.name = 'frameshift_sequence_variation' OR cvterm.name = 'sequence_variant_causing_plus_1_frameshift_mutation' OR cvterm.name = 'sequence_variant_causing_minus_1_frameshift' OR cvterm.name = 'sequence_variant_causing_plus_2_frameshift' OR cvterm.name = 'sequence_variant_causing_minus_2_frameshift' OR cvterm.name = 'frame_restoring_sequence_variant' OR cvterm.name = 'sequence_variant_affecting_polyadenylation' OR cvterm.name = 'sequence_variant_affecting_editing' OR cvterm.name = 'sequence_variant_increasing_transcript_stability' OR cvterm.name = 'sequence_variant_decreasing_transcript_stability' OR cvterm.name = 'sequence_variant_causing_compensatory_transcript_secondary_structure_mutation' OR cvterm.name = 'sequence_variation_affecting_transcript_sequence';
29220c28618
< --- *** relation: incomplete_terminal_codon_variant ***
---
> --- *** relation: sequence_variant_increasing_rate_of_transcription ***
29223,29225d28620
< --- *** A sequence variant where at least one ba ***
< --- *** se of the final codon of an incompletely ***
< --- ***  annotated transcript is changed.        ***
29229c28624
< CREATE VIEW incomplete_terminal_codon_variant AS
---
> CREATE VIEW sequence_variant_increasing_rate_of_transcription AS
29231c28626
<     feature_id AS incomplete_terminal_codon_variant_id,
---
>     feature_id AS sequence_variant_increasing_rate_of_transcription_id,
29235c28630
<   WHERE cvterm.name = 'incomplete_terminal_codon_variant';
---
>   WHERE cvterm.name = 'sequence_variant_increasing_rate_of_transcription';
29238c28633
< --- *** relation: intron_variant ***
---
> --- *** relation: sequence_variant_affecting_rate_of_transcription ***
29241,29242c28636,28637
< --- *** A transcript variant occurring within an ***
< --- ***  intron.                                 ***
---
> --- *** A mutation that alters the rate a which  ***
> --- *** transcription of the sequence occurs.    ***
29246c28641
< CREATE VIEW intron_variant AS
---
> CREATE VIEW sequence_variant_affecting_rate_of_transcription AS
29248c28643
<     feature_id AS intron_variant_id,
---
>     feature_id AS sequence_variant_affecting_rate_of_transcription_id,
29252c28647
<   WHERE cvterm.name = 'splice_site_variant' OR cvterm.name = 'splice_acceptor_variant' OR cvterm.name = 'splice_donor_variant' OR cvterm.name = 'splice_donor_5th_base_variant' OR cvterm.name = 'intron_variant';
---
>   WHERE cvterm.name = 'sequence_variant_decreasing_rate_of_transcription' OR cvterm.name = 'sequence_variant_increasing_rate_of_transcription' OR cvterm.name = 'sequence_variant_affecting_rate_of_transcription';
29255c28650
< --- *** relation: intergenic_variant ***
---
> --- *** relation: sequence_variant_affecting_transcript_stability ***
29258,29259c28653,28654
< --- *** A sequence variant located in the interg ***
< --- *** enic region, between genes.              ***
---
> --- *** Sequence variant affects the stability o ***
> --- *** f the transcript.                        ***
29263c28658
< CREATE VIEW intergenic_variant AS
---
> CREATE VIEW sequence_variant_affecting_transcript_stability AS
29265c28660
<     feature_id AS intergenic_variant_id,
---
>     feature_id AS sequence_variant_affecting_transcript_stability_id,
29269c28664
<   WHERE cvterm.name = 'intergenic_variant';
---
>   WHERE cvterm.name = 'sequence_variant_increasing_transcript_stability' OR cvterm.name = 'sequence_variant_decreasing_transcript_stability' OR cvterm.name = 'sequence variant_affecting_transcript_stability';
29272c28667
< --- *** relation: splice_site_variant ***
---
> --- *** relation: sequence_variant_increasing_transcript_stability ***
29275,29278c28670,28671
< --- *** A sequence variant that changes the firs ***
< --- *** t two or last two bases of an intron, or ***
< --- ***  the 5th base from the start of the intr ***
< --- *** on in the orientation of the transcript. ***
---
> --- *** Sequence variant increases the stability ***
> --- ***  (half-life) of the transcript.          ***
29282c28675
< CREATE VIEW splice_site_variant AS
---
> CREATE VIEW sequence_variant_increasing_transcript_stability AS
29284c28677
<     feature_id AS splice_site_variant_id,
---
>     feature_id AS sequence_variant_increasing_transcript_stability_id,
29288c28681
<   WHERE cvterm.name = 'splice_acceptor_variant' OR cvterm.name = 'splice_donor_variant' OR cvterm.name = 'splice_donor_5th_base_variant' OR cvterm.name = 'splice_site_variant';
---
>   WHERE cvterm.name = 'sequence_variant_increasing_transcript_stability';
29291c28684
< --- *** relation: splice_region_variant ***
---
> --- *** relation: sequence_variant_decreasing_transcript_stability ***
29294,29297c28687,28688
< --- *** A sequence variant in which a change has ***
< --- ***  occurred within the region of the splic ***
< --- *** e site, either within 1-3 bases of the e ***
< --- *** xon or 3-8 bases of the intron.          ***
---
> --- *** Sequence variant decreases the stability ***
> --- ***  (half-life) of the transcript.          ***
29301c28692
< CREATE VIEW splice_region_variant AS
---
> CREATE VIEW sequence_variant_decreasing_transcript_stability AS
29303c28694
<     feature_id AS splice_region_variant_id,
---
>     feature_id AS sequence_variant_decreasing_transcript_stability_id,
29307c28698
<   WHERE cvterm.name = 'splice_region_variant';
---
>   WHERE cvterm.name = 'sequence_variant_decreasing_transcript_stability';
29310c28701
< --- *** relation: upstream_gene_variant ***
---
> --- *** relation: sequence_variation_affecting_level_of_transcript ***
29313c28704,28707
< --- *** A sequence variant located 5' of a gene. ***
---
> --- *** A sequence variation that causes a chang ***
> --- *** e in the level of mature, spliced and pr ***
> --- *** ocessed RNA, resulting from a change in  ***
> --- *** the corresponding DNA sequence.          ***
29317c28711
< CREATE VIEW upstream_gene_variant AS
---
> CREATE VIEW sequence_variation_affecting_level_of_transcript AS
29319c28713
<     feature_id AS upstream_gene_variant_id,
---
>     feature_id AS sequence_variation_affecting_level_of_transcript_id,
29323c28717
<   WHERE cvterm.name = '5KB_upstream_variant' OR cvterm.name = '2KB_upstream_variant' OR cvterm.name = 'upstream_gene_variant';
---
>   WHERE cvterm.name = 'sequence_variation_decreasing_level_of_transcript' OR cvterm.name = 'sequence_variation_increasing_level_of_transcript' OR cvterm.name = 'sequence_variation_affecting_level_of_transcript';
29326c28720
< --- *** relation: downstream_gene_variant ***
---
> --- *** relation: sequence_variation_decreasing_level_of_transcript ***
29329c28723,28726
< --- *** A sequence variant located 3' of a gene. ***
---
> --- *** A sequence variation that causes a decre ***
> --- *** ase in the level of mature, spliced and  ***
> --- *** processed RNA, resulting from a change i ***
> --- *** n the corresponding DNA sequence.        ***
29333c28730
< CREATE VIEW downstream_gene_variant AS
---
> CREATE VIEW sequence_variation_decreasing_level_of_transcript AS
29335c28732
<     feature_id AS downstream_gene_variant_id,
---
>     feature_id AS sequence_variation_decreasing_level_of_transcript_id,
29339c28736
<   WHERE cvterm.name = '5KB_downstream_variant' OR cvterm.name = '500B_downstream_variant' OR cvterm.name = 'downstream_gene_variant';
---
>   WHERE cvterm.name = 'sequence_variation_decreasing_level_of_transcript';
29342c28739
< --- *** relation: fivekb_downstream_variant ***
---
> --- *** relation: sequence_variation_increasing_level_of_transcript ***
29345,29346c28742,28745
< --- *** A sequence variant located within 5 KB o ***
< --- *** f the end of a gene.                     ***
---
> --- *** A sequence_variation that causes an incr ***
> --- *** ease in the level of mature, spliced and ***
> --- ***  processed RNA, resulting from a change  ***
> --- *** in the corresponding DNA sequence.       ***
29350c28749
< CREATE VIEW fivekb_downstream_variant AS
---
> CREATE VIEW sequence_variation_increasing_level_of_transcript AS
29352c28751
<     feature_id AS fivekb_downstream_variant_id,
---
>     feature_id AS sequence_variation_increasing_level_of_transcript_id,
29356c28755
<   WHERE cvterm.name = '500B_downstream_variant' OR cvterm.name = '5KB_downstream_variant';
---
>   WHERE cvterm.name = 'sequence_variation_increasing_level_of_transcript';
29359c28758
< --- *** relation: fivehundred_b_downstream_variant ***
---
> --- *** relation: sequence_variant_affecting_translational_product ***
29362,29363c28761,28762
< --- *** A sequence variant located within a half ***
< --- ***  KB of the end of a gene.                ***
---
> --- *** Mutation causes a change in primary tran ***
> --- *** slation product of a transcript.         ***
29367c28766
< CREATE VIEW fivehundred_b_downstream_variant AS
---
> CREATE VIEW sequence_variant_affecting_translational_product AS
29369c28768
<     feature_id AS fivehundred_b_downstream_variant_id,
---
>     feature_id AS sequence_variant_affecting_translational_product_id,
29373c28772
<   WHERE cvterm.name = '500B_downstream_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_no_change_of_translational_product' OR cvterm.name = 'sequence_variant_causing_uncharacterised_change_of_translational_product' OR cvterm.name = 'sequence_variant_causing_complex_change_of_translational_product' OR cvterm.name = 'sequence_variant_affecting_level_of_translational_product' OR cvterm.name = 'sequence_variant_affecting_polypeptide_amino_acid_sequence' OR cvterm.name = 'sequence_variant_affecting_3D_structure_of_polypeptide' OR cvterm.name = 'sequence_variant_affecting_polypeptide_function' OR cvterm.name = 'sequence_variant_causing_partially_characterised_change_of_translational_product' OR cvterm.name = 'sequence_variant_decreasing_level_of_translation_product' OR cvterm.name = 'sequence_variant_increasing_level_of_translation_product' OR cvterm.name = 'sequence_variant_causing_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_amino_acid_insertion' OR cvterm.name = 'sequence_variant_causing_amino_acid_deletion' OR cvterm.name = 'sequence_variant_causing_polypeptide_truncation' OR cvterm.name = 'sequence_variant_causing_polypeptide_elongation' OR cvterm.name = 'sequence_variant_causing_polypeptide_fusion' OR cvterm.name = 'sequence_variant_causing_conservative_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_nonconservative_amino_acid_substitution' OR cvterm.name = 'mutation_causing_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_inframe_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutaton_causing_inframe_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_C_terminal_elongation' OR cvterm.name = 'sequence_variant_causing_no_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_uncharacterised_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_complex_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_conformational_change' OR cvterm.name = 'sequence_variant_causing_partially_characterised_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_loss_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_polypeptide_localization_change' OR cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change' OR cvterm.name = 'sequence_variant_causing_gain_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_inactive_ligand_binding_site' OR cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change' OR cvterm.name = 'sequence_variant_causing_partial_loss_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_inactive_catalytic_site' OR cvterm.name = 'sequence_variant_affecting_translational_product';
29376c28775
< --- *** relation: fivekb_upstream_variant ***
---
> --- *** relation: sequence_variant_causing_no_change_of_translational_product ***
29379,29380c28778,28779
< --- *** A sequence variant located within 5KB 5' ***
< --- ***  of a gene.                              ***
---
> --- *** The sequence variant at RNA level does n ***
> --- *** ot lead to any change in polypeptide.    ***
29384c28783
< CREATE VIEW fivekb_upstream_variant AS
---
> CREATE VIEW sequence_variant_causing_no_change_of_translational_product AS
29386c28785
<     feature_id AS fivekb_upstream_variant_id,
---
>     feature_id AS sequence_variant_causing_no_change_of_translational_product_id,
29390c28789
<   WHERE cvterm.name = '2KB_upstream_variant' OR cvterm.name = '5KB_upstream_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_no_change_of_translational_product';
29393c28792
< --- *** relation: twokb_upstream_variant ***
---
> --- *** relation: sequence_variant_causing_uncharacterised_change_of_product ***
29396,29397c28795,28796
< --- *** A sequence variant located within 2KB 5' ***
< --- ***  of a gene.                              ***
---
> --- *** A sequence variant causing an uncharacte ***
> --- *** rized change of translational product.   ***
29401c28800
< CREATE VIEW twokb_upstream_variant AS
---
> CREATE VIEW sequence_variant_causing_uncharacterised_change_of_product AS
29403c28802
<     feature_id AS twokb_upstream_variant_id,
---
>     feature_id AS sequence_variant_causing_uncharacterised_change_of_product_id,
29407c28806
<   WHERE cvterm.name = '2KB_upstream_variant';
---
>   WHERE cvterm.name = 'sequence_variant_causing_partially_characterised_change_of_translational_product' OR cvterm.name = 'sequence_variant_causing_uncharacterised_change_of_translational_product';
29410c28809
< --- *** relation: rrna_gene ***
---
> --- *** relation: seq_variant_causing_partly_characterised_change_of_product ***
29413c28812,28814
< --- *** A gene that encodes for ribosomal RNA.   ***
---
> --- *** A sequence variant causing a partially u ***
> --- *** ncharacterised change in translational p ***
> --- *** roduct.                                  ***
29417c28818
< CREATE VIEW rrna_gene AS
---
> CREATE VIEW seq_variant_causing_partly_characterised_change_of_product AS
29419c28820
<     feature_id AS rrna_gene_id,
---
>     feature_id AS seq_variant_causing_partly_characterised_change_of_product_id,
29423c28824
<   WHERE cvterm.name = 'rRNA_gene';
---
>   WHERE cvterm.name = 'sequence_variant_causing_partially_characterised_change_of_translational_product';
29426c28827
< --- *** relation: pirna_gene ***
---
> --- *** relation: sequence_variant_causing_complex_change_of_product ***
29429,29430c28830,28832
< --- *** A gene that encodes for an piwi associat ***
< --- *** ed RNA.                                  ***
---
> --- *** Any sequence variant effect that is know ***
> --- *** n at nucleotide level but cannot be expl ***
> --- *** ained by using other key terms.          ***
29434c28836
< CREATE VIEW pirna_gene AS
---
> CREATE VIEW sequence_variant_causing_complex_change_of_product AS
29436c28838
<     feature_id AS pirna_gene_id,
---
>     feature_id AS sequence_variant_causing_complex_change_of_product_id,
29440c28842
<   WHERE cvterm.name = 'piRNA_gene';
---
>   WHERE cvterm.name = 'sequence_variant_causing_complex_change_of_translational_product';
29443c28845
< --- *** relation: rnase_p_rna_gene ***
---
> --- *** relation: sequence_variant_causing_amino_acid_substitution ***
29446c28848,28849
< --- *** A gene that encodes an RNase P RNA.      ***
---
> --- *** The replacement of a single amino acid b ***
> --- *** y another.                               ***
29450c28853
< CREATE VIEW rnase_p_rna_gene AS
---
> CREATE VIEW sequence_variant_causing_amino_acid_substitution AS
29452c28855
<     feature_id AS rnase_p_rna_gene_id,
---
>     feature_id AS sequence_variant_causing_amino_acid_substitution_id,
29456c28859
<   WHERE cvterm.name = 'RNase_P_RNA_gene';
---
>   WHERE cvterm.name = 'sequence_variant_causing_conservative_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_nonconservative_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_amino_acid_substitution';
29459c28862
< --- *** relation: rnase_mrp_rna_gene ***
---
> --- *** relation: sequence_variant_causing_conservative_amino_acid_sub ***
29462d28864
< --- *** A gene that encodes a RNase_MRP_RNA.     ***
29466c28868
< CREATE VIEW rnase_mrp_rna_gene AS
---
> CREATE VIEW sequence_variant_causing_conservative_amino_acid_sub AS
29468c28870
<     feature_id AS rnase_mrp_rna_gene_id,
---
>     feature_id AS sequence_variant_causing_conservative_amino_acid_sub_id,
29472c28874
<   WHERE cvterm.name = 'RNase_MRP_RNA_gene';
---
>   WHERE cvterm.name = 'sequence_variant_causing_conservative_amino_acid_substitution';
29475c28877
< --- *** relation: lincrna_gene ***
---
> --- *** relation: sequence_variant_causing_nonconservative_amino_acid_sub ***
29478,29479d28879
< --- *** A gene that encodes large intervening no ***
< --- *** n-coding RNA.                            ***
29483c28883
< CREATE VIEW lincrna_gene AS
---
> CREATE VIEW sequence_variant_causing_nonconservative_amino_acid_sub AS
29485c28885
<     feature_id AS lincrna_gene_id,
---
>     feature_id AS sequence_variant_causing_nonconservative_amino_acid_sub_id,
29489c28889
<   WHERE cvterm.name = 'lincRNA_gene';
---
>   WHERE cvterm.name = 'sequence_variant_causing_nonconservative_amino_acid_substitution';
29492c28892
< --- *** relation: mathematically_defined_repeat ***
---
> --- *** relation: sequence_variant_causing_amino_acid_insertion ***
29495,29502c28895,28897
< --- *** A mathematically defined repeat (MDR) is ***
< --- ***  a experimental feature that is determin ***
< --- *** ed by querying overlapping oligomers of  ***
< --- *** length k against a database of shotgun s ***
< --- *** equence data and identifying regions in  ***
< --- *** the query sequence that exceed a statist ***
< --- *** ically determined threshold of repetitiv ***
< --- *** eness.                                   ***
---
> --- *** The insertion of one or more amino acids ***
> --- ***  from the polypeptide, without affecting ***
> --- ***  the surrounding sequence.               ***
29506c28901
< CREATE VIEW mathematically_defined_repeat AS
---
> CREATE VIEW sequence_variant_causing_amino_acid_insertion AS
29508c28903
<     feature_id AS mathematically_defined_repeat_id,
---
>     feature_id AS sequence_variant_causing_amino_acid_insertion_id,
29512c28907
<   WHERE cvterm.name = 'mathematically_defined_repeat';
---
>   WHERE cvterm.name = 'sequence_variant_causing_amino_acid_insertion';
29515c28910
< --- *** relation: telomerase_rna_gene ***
---
> --- *** relation: sequence_variant_causing_amino_acid_deletion ***
29518,29520c28913,28915
< --- *** A telomerase RNA gene is a non coding RN ***
< --- *** A gene the RNA product of which is a com ***
< --- *** ponent of telomerase.                    ***
---
> --- *** The deletion of one or more amino acids  ***
> --- *** from the polypeptide, without affecting  ***
> --- *** the surrounding sequence.                ***
29524c28919
< CREATE VIEW telomerase_rna_gene AS
---
> CREATE VIEW sequence_variant_causing_amino_acid_deletion AS
29526c28921
<     feature_id AS telomerase_rna_gene_id,
---
>     feature_id AS sequence_variant_causing_amino_acid_deletion_id,
29530c28925
<   WHERE cvterm.name = 'telomerase_RNA_gene';
---
>   WHERE cvterm.name = 'sequence_variant_causing_amino_acid_deletion';
29533c28928
< --- *** relation: targeting_vector ***
---
> --- *** relation: sequence_variant_causing_polypeptide_truncation ***
29536,29539c28931,28934
< --- *** An engineered vector that is able to tak ***
< --- *** e part in homologous recombination in a  ***
< --- *** host with the intent of introducing site ***
< --- ***  specific genomic modifications.         ***
---
> --- *** The translational product is truncated a ***
> --- *** t its C-terminus, usually a result of a  ***
> --- *** nonsense codon change in transcript (SO: ***
> --- *** 1000062).                                ***
29543c28938
< CREATE VIEW targeting_vector AS
---
> CREATE VIEW sequence_variant_causing_polypeptide_truncation AS
29545c28940
<     feature_id AS targeting_vector_id,
---
>     feature_id AS sequence_variant_causing_polypeptide_truncation_id,
29549c28944
<   WHERE cvterm.name = 'targeting_vector';
---
>   WHERE cvterm.name = 'sequence_variant_causing_polypeptide_truncation';
29552c28947
< --- *** relation: genetic_marker ***
---
> --- *** relation: sequence_variant_causing_polypeptide_elongation ***
29555,29556c28950,28952
< --- *** A measurable sequence feature that varie ***
< --- *** s within a population.                   ***
---
> --- *** The extension of the translational produ ***
> --- *** ct at either (or both) the N-terminus an ***
> --- *** d/or the C-terminus.                     ***
29560c28956
< CREATE VIEW genetic_marker AS
---
> CREATE VIEW sequence_variant_causing_polypeptide_elongation AS
29562c28958
<     feature_id AS genetic_marker_id,
---
>     feature_id AS sequence_variant_causing_polypeptide_elongation_id,
29566c28962
<   WHERE cvterm.name = 'heritable_phenotypic_marker' OR cvterm.name = 'DArT_marker' OR cvterm.name = 'genetic_marker';
---
>   WHERE cvterm.name = 'mutation_causing_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_inframe_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutaton_causing_inframe_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_C_terminal_elongation' OR cvterm.name = 'sequence_variant_causing_polypeptide_elongation';
29569c28965
< --- *** relation: dart_marker ***
---
> --- *** relation: mutation_causing_polypeptide_n_terminal_elongation ***
29572,29573d28967
< --- *** A genetic marker, discovered using Diver ***
< --- *** sity Arrays Technology (DArT) technology ***
29578,29684c28972
< CREATE VIEW dart_marker AS
<   SELECT
<     feature_id AS dart_marker_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'DArT_marker';
< 
< --- ************************************************
< --- *** relation: kozak_sequence ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of ribosome entry site, specific  ***
< --- *** to Eukaryotic organisms that overlaps pa ***
< --- *** rt of both 5' UTR and CDS sequence.      ***
< --- ************************************************
< ---
< 
< CREATE VIEW kozak_sequence AS
<   SELECT
<     feature_id AS kozak_sequence_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'kozak_sequence';
< 
< --- ************************************************
< --- *** relation: nested_transposon ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transposon that is disrupted by the in ***
< --- *** sertion of another element.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW nested_transposon AS
<   SELECT
<     feature_id AS nested_transposon_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'nested_transposon';
< 
< --- ************************************************
< --- *** relation: nested_repeat ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A repeat that is disrupted by the insert ***
< --- *** ion of another element.                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW nested_repeat AS
<   SELECT
<     feature_id AS nested_repeat_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'nested_tandem_repeat' OR cvterm.name = 'nested_repeat';
< 
< --- ************************************************
< --- *** relation: inframe_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which does not cause  ***
< --- *** a disruption of the translational readin ***
< --- *** g frame.                                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW inframe_variant AS
<   SELECT
<     feature_id AS inframe_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inframe_codon_gain' OR cvterm.name = 'inframe_codon_loss' OR cvterm.name = 'inframe_variant';
< 
< --- ************************************************
< --- *** relation: inframe_codon_gain ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which gains a codon,  ***
< --- *** and does not cause a disruption of the t ***
< --- *** ranslational reading frame.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW inframe_codon_gain AS
<   SELECT
<     feature_id AS inframe_codon_gain_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inframe_codon_gain';
< 
< --- ************************************************
< --- *** relation: inframe_codon_loss ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant which loses a codon,  ***
< --- *** and does not cause a disruption of the t ***
< --- *** ranslational reading frame.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW inframe_codon_loss AS
---
> CREATE VIEW mutation_causing_polypeptide_n_terminal_elongation AS
29686c28974
<     feature_id AS inframe_codon_loss_id,
---
>     feature_id AS mutation_causing_polypeptide_n_terminal_elongation_id,
29690c28978
<   WHERE cvterm.name = 'inframe_codon_loss';
---
>   WHERE cvterm.name = 'mutation_causing_inframe_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_polypeptide_N_terminal_elongation';
29693c28981
< --- *** relation: retinoic_acid_responsive_element ***
---
> --- *** relation: mutation_causing_polypeptide_c_terminal_elongation ***
29696,29701c28984
< --- *** A transcription factor binding site of v ***
< --- *** ariable direct repeats of the sequence P ***
< --- *** uGGTCA spaced by five nucleotides (DR5)  ***
< --- *** found in the promoters of retinoic acid- ***
< --- *** responsive genes, to which retinoic acid ***
< --- ***  receptors bind.                         ***
---
> --- *** .                                        ***
29705c28988
< CREATE VIEW retinoic_acid_responsive_element AS
---
> CREATE VIEW mutation_causing_polypeptide_c_terminal_elongation AS
29707c28990
<     feature_id AS retinoic_acid_responsive_element_id,
---
>     feature_id AS mutation_causing_polypeptide_c_terminal_elongation_id,
29711c28994
<   WHERE cvterm.name = 'retinoic_acid_responsive_element';
---
>   WHERE cvterm.name = 'mutaton_causing_inframe_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_polypeptide_C_terminal_elongation';
29714c28997
< --- *** relation: nucleotide_to_protein_binding_site ***
---
> --- *** relation: sequence_variant_affecting_level_of_translational_product ***
29717,29719d28999
< --- *** A binding site that, in the nucleotide m ***
< --- *** olecule, interacts selectively and non-c ***
< --- *** ovalently with polypeptide residues.     ***
29723c29003
< CREATE VIEW nucleotide_to_protein_binding_site AS
---
> CREATE VIEW sequence_variant_affecting_level_of_translational_product AS
29725c29005
<     feature_id AS nucleotide_to_protein_binding_site_id,
---
>     feature_id AS sequence_variant_affecting_level_of_translational_product_id,
29729c29009
<   WHERE cvterm.name = 'nuclease_binding_site' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'histone_binding_site' OR cvterm.name = 'insulator_binding_site' OR cvterm.name = 'enhancer_binding_site' OR cvterm.name = 'restriction_enzyme_binding_site' OR cvterm.name = 'nuclease_sensitive_site' OR cvterm.name = 'homing_endonuclease_binding_site' OR cvterm.name = 'nuclease_hypersensitive_site' OR cvterm.name = 'group_1_intron_homing_endonuclease_target_region' OR cvterm.name = 'DNAseI_hypersensitive_site' OR cvterm.name = 'nucleotide_to_protein_binding_site';
---
>   WHERE cvterm.name = 'sequence_variant_decreasing_level_of_translation_product' OR cvterm.name = 'sequence_variant_increasing_level_of_translation_product' OR cvterm.name = 'sequence_variant_affecting_level_of_translational_product';
29732c29012
< --- *** relation: nucleotide_binding_site ***
---
> --- *** relation: sequence_variant_decreasing_level_of_translation_product ***
29735,29737d29014
< --- *** A binding site that, in the molecule, in ***
< --- *** teracts selectively and non-covalently w ***
< --- *** ith nucleotide residues.                 ***
29741c29018
< CREATE VIEW nucleotide_binding_site AS
---
> CREATE VIEW sequence_variant_decreasing_level_of_translation_product AS
29743c29020
<     feature_id AS nucleotide_binding_site_id,
---
>     feature_id AS sequence_variant_decreasing_level_of_translation_product_id,
29747c29024
<   WHERE cvterm.name = 'miRNA_target_site' OR cvterm.name = 'DNA_binding_site' OR cvterm.name = 'primer_binding_site' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'nucleotide_binding_site';
---
>   WHERE cvterm.name = 'sequence_variant_decreasing_level_of_translation_product';
29750c29027
< --- *** relation: metal_binding_site ***
---
> --- *** relation: sequence_variant_increasing_level_of_translation_product ***
29753,29755d29029
< --- *** A binding site that, in the molecule, in ***
< --- *** teracts selectively and non-covalently w ***
< --- *** ith metal ions.                          ***
29759c29033
< CREATE VIEW metal_binding_site AS
---
> CREATE VIEW sequence_variant_increasing_level_of_translation_product AS
29761c29035
<     feature_id AS metal_binding_site_id,
---
>     feature_id AS sequence_variant_increasing_level_of_translation_product_id,
29765c29039
<   WHERE cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'metal_binding_site';
---
>   WHERE cvterm.name = 'sequence_variant_increasing_level_of_translation_product';
29768c29042
< --- *** relation: ligand_binding_site ***
---
> --- *** relation: sequence_variant_affecting_polypeptide_amino_acid_sequence ***
29771,29774d29044
< --- *** A binding site that, in the molecule, in ***
< --- *** teracts selectively and non-covalently w ***
< --- *** ith a small molecule such as a drug, or  ***
< --- *** hormone.                                 ***
29778c29048
< CREATE VIEW ligand_binding_site AS
---
> CREATE VIEW sequence_variant_affecting_polypeptide_amino_acid_sequence AS
29780c29050
<     feature_id AS ligand_binding_site_id,
---
>     feature_id AS sequence_variant_affecting_polypeptide_amino_acid_sequence_id,
29784c29054
<   WHERE cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'ligand_binding_site';
---
>   WHERE cvterm.name = 'sequence_variant_causing_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_amino_acid_insertion' OR cvterm.name = 'sequence_variant_causing_amino_acid_deletion' OR cvterm.name = 'sequence_variant_causing_polypeptide_truncation' OR cvterm.name = 'sequence_variant_causing_polypeptide_elongation' OR cvterm.name = 'sequence_variant_causing_polypeptide_fusion' OR cvterm.name = 'sequence_variant_causing_conservative_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_nonconservative_amino_acid_substitution' OR cvterm.name = 'mutation_causing_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_inframe_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutaton_causing_inframe_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_C_terminal_elongation' OR cvterm.name = 'sequence_variant_affecting_polypeptide_amino_acid_sequence';
29787c29057
< --- *** relation: nested_tandem_repeat ***
---
> --- *** relation: mutation_causing_inframe_polypeptide_n_terminal_elongation ***
29790,29792d29059
< --- *** An NTR is a nested repeat of two distinc ***
< --- *** t tandem motifs interspersed with each o ***
< --- *** ther.                                    ***
29796c29063
< CREATE VIEW nested_tandem_repeat AS
---
> CREATE VIEW mutation_causing_inframe_polypeptide_n_terminal_elongation AS
29798c29065
<     feature_id AS nested_tandem_repeat_id,
---
>     feature_id AS mutation_causing_inframe_polypeptide_n_terminal_elongation_id,
29802c29069
<   WHERE cvterm.name = 'nested_tandem_repeat';
---
>   WHERE cvterm.name = 'mutation_causing_inframe_polypeptide_N_terminal_elongation';
29805c29072
< --- *** relation: promoter_element ***
---
> --- *** relation: mutation_causing_out_of_frame_polypeptide_n_terminal_elong ***
29811c29078
< CREATE VIEW promoter_element AS
---
> CREATE VIEW mutation_causing_out_of_frame_polypeptide_n_terminal_elong AS
29813c29080
<     feature_id AS promoter_element_id,
---
>     feature_id AS mutation_causing_out_of_frame_polypeptide_n_terminal_elong_id,
29817c29084
<   WHERE cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'core_promoter_element' OR cvterm.name = 'regulatory_promoter_element' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'promoter_element';
---
>   WHERE cvterm.name = 'mutation_causing_out_of_frame_polypeptide_N_terminal_elongation';
29820c29087
< --- *** relation: core_promoter_element ***
---
> --- *** relation: mutaton_causing_inframe_polypeptide_c_terminal_elongation ***
29826c29093
< CREATE VIEW core_promoter_element AS
---
> CREATE VIEW mutaton_causing_inframe_polypeptide_c_terminal_elongation AS
29828c29095
<     feature_id AS core_promoter_element_id,
---
>     feature_id AS mutaton_causing_inframe_polypeptide_c_terminal_elongation_id,
29832c29099
<   WHERE cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'core_promoter_element';
---
>   WHERE cvterm.name = 'mutaton_causing_inframe_polypeptide_C_terminal_elongation';
29835c29102
< --- *** relation: rna_polymerase_ii_tata_box ***
---
> --- *** relation: mutation_causing_out_of_frame_polypeptide_c_terminal_elong ***
29838,29839d29104
< --- *** A TATA box core promoter of a gene trans ***
< --- *** cribed by RNA polymerase II.             ***
29843c29108
< CREATE VIEW rna_polymerase_ii_tata_box AS
---
> CREATE VIEW mutation_causing_out_of_frame_polypeptide_c_terminal_elong AS
29845c29110
<     feature_id AS rna_polymerase_ii_tata_box_id,
---
>     feature_id AS mutation_causing_out_of_frame_polypeptide_c_terminal_elong_id,
29849c29114
<   WHERE cvterm.name = 'RNA_polymerase_II_TATA_box';
---
>   WHERE cvterm.name = 'mutation_causing_out_of_frame_polypeptide_C_terminal_elongation';
29852c29117
< --- *** relation: rna_polymerase_iii_tata_box ***
---
> --- *** relation: frame_restoring_sequence_variant ***
29855,29856c29120,29122
< --- *** A TATA box core promoter of a gene trans ***
< --- *** cribed by RNA polymerase III.            ***
---
> --- *** A mutation that reverts the sequence of  ***
> --- *** a previous frameshift mutation back to t ***
> --- *** he initial frame.                        ***
29860c29126
< CREATE VIEW rna_polymerase_iii_tata_box AS
---
> CREATE VIEW frame_restoring_sequence_variant AS
29862c29128
<     feature_id AS rna_polymerase_iii_tata_box_id,
---
>     feature_id AS frame_restoring_sequence_variant_id,
29866c29132
<   WHERE cvterm.name = 'RNA_polymerase_III_TATA_box';
---
>   WHERE cvterm.name = 'frame_restoring_sequence_variant';
29869c29135
< --- *** relation: bred_motif ***
---
> --- *** relation: sequence_variant_affecting_3d_structure_of_polypeptide ***
29872,29874c29138,29141
< --- *** A core TRNA polymerase II promoter eleme ***
< --- *** nt with consensus (G/A)T(T/G/A)(T/A)(G/T ***
< --- *** )(T/G)(T/G).                             ***
---
> --- *** A mutation that changes the amino acid s ***
> --- *** equence of the peptide in such a way tha ***
> --- *** t it changes the 3D structure of the mol ***
> --- *** ecule.                                   ***
29878c29145
< CREATE VIEW bred_motif AS
---
> CREATE VIEW sequence_variant_affecting_3d_structure_of_polypeptide AS
29880c29147
<     feature_id AS bred_motif_id,
---
>     feature_id AS sequence_variant_affecting_3d_structure_of_polypeptide_id,
29884c29151
<   WHERE cvterm.name = 'BREd_motif';
---
>   WHERE cvterm.name = 'sequence_variant_causing_no_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_uncharacterised_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_complex_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_conformational_change' OR cvterm.name = 'sequence_variant_causing_partially_characterised_3D_structural_change' OR cvterm.name = 'sequence_variant_affecting_3D_structure_of_polypeptide';
29887c29154
< --- *** relation: dce ***
---
> --- *** relation: sequence_variant_causing_no_3d_structural_change ***
29890,29893d29156
< --- *** A discontinuous core element of RNA poly ***
< --- *** merase II transcribed genes, situated do ***
< --- *** wnstream of the TSS. It is composed of t ***
< --- *** hree sub elements: SI, SII and SIII.     ***
29897c29160
< CREATE VIEW dce AS
---
> CREATE VIEW sequence_variant_causing_no_3d_structural_change AS
29899c29162
<     feature_id AS dce_id,
---
>     feature_id AS sequence_variant_causing_no_3d_structural_change_id,
29903c29166
<   WHERE cvterm.name = 'DCE';
---
>   WHERE cvterm.name = 'sequence_variant_causing_no_3D_structural_change';
29906c29169
< --- *** relation: dce_si ***
---
> --- *** relation: seq_variant_causing_uncharacterised_3d_structural_change ***
29909,29910d29171
< --- *** A sub element of the DCE core promoter e ***
< --- *** lement, with consensus sequence CTTC.    ***
29914c29175
< CREATE VIEW dce_si AS
---
> CREATE VIEW seq_variant_causing_uncharacterised_3d_structural_change AS
29916c29177
<     feature_id AS dce_si_id,
---
>     feature_id AS seq_variant_causing_uncharacterised_3d_structural_change_id,
29920c29181
<   WHERE cvterm.name = 'DCE_SI';
---
>   WHERE cvterm.name = 'sequence_variant_causing_partially_characterised_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_uncharacterised_3D_structural_change';
29923c29184
< --- *** relation: dce_sii ***
---
> --- *** relation: seq_var_causing_partly_characterised_3d_structural_change ***
29926,29927d29186
< --- *** A sub element of the DCE core promoter e ***
< --- *** lement with consensus sequence CTGT.     ***
29931c29190
< CREATE VIEW dce_sii AS
---
> CREATE VIEW seq_var_causing_partly_characterised_3d_structural_change AS
29933c29192
<     feature_id AS dce_sii_id,
---
>     feature_id AS seq_var_causing_partly_characterised_3d_structural_change_id,
29937c29196
<   WHERE cvterm.name = 'DCE_SII';
---
>   WHERE cvterm.name = 'sequence_variant_causing_partially_characterised_3D_structural_change';
29940c29199
< --- *** relation: dce_siii ***
---
> --- *** relation: sequence_variant_causing_complex_3d_structural_change ***
29943,29944d29201
< --- *** A sub element of the DCE core promoter e ***
< --- *** lement with consensus sequence AGC.      ***
29948c29205
< CREATE VIEW dce_siii AS
---
> CREATE VIEW sequence_variant_causing_complex_3d_structural_change AS
29950c29207
<     feature_id AS dce_siii_id,
---
>     feature_id AS sequence_variant_causing_complex_3d_structural_change_id,
29954c29211
<   WHERE cvterm.name = 'DCE_SIII';
---
>   WHERE cvterm.name = 'sequence_variant_causing_complex_3D_structural_change';
29957c29214
< --- *** relation: proximal_promoter_element ***
---
> --- *** relation: sequence_variant_causing_conformational_change ***
29963c29220
< CREATE VIEW proximal_promoter_element AS
---
> CREATE VIEW sequence_variant_causing_conformational_change AS
29965c29222
<     feature_id AS proximal_promoter_element_id,
---
>     feature_id AS sequence_variant_causing_conformational_change_id,
29969c29226
<   WHERE cvterm.name = 'proximal_promoter_element';
---
>   WHERE cvterm.name = 'sequence_variant_causing_conformational_change';
29972c29229
< --- *** relation: rnapol_ii_core_promoter ***
---
> --- *** relation: sequence_variant_affecting_polypeptide_function ***
29975,29977d29231
< --- *** The minimal portion of the promoter requ ***
< --- *** ired to properly initiate transcription  ***
< --- *** in RNA polymerase II transcribed genes.  ***
29981c29235
< CREATE VIEW rnapol_ii_core_promoter AS
---
> CREATE VIEW sequence_variant_affecting_polypeptide_function AS
29983c29237
<     feature_id AS rnapol_ii_core_promoter_id,
---
>     feature_id AS sequence_variant_affecting_polypeptide_function_id,
29987c29241
<   WHERE cvterm.name = 'RNApol_II_core_promoter';
---
>   WHERE cvterm.name = 'sequence_variant_causing_loss_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_polypeptide_localization_change' OR cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change' OR cvterm.name = 'sequence_variant_causing_gain_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_inactive_ligand_binding_site' OR cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change' OR cvterm.name = 'sequence_variant_causing_partial_loss_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_inactive_catalytic_site' OR cvterm.name = 'sequence_variant_affecting_polypeptide_function';
29990c29244
< --- *** relation: distal_promoter_element ***
---
> --- *** relation: sequence_variant_causing_loss_of_function_of_polypeptide ***
29996c29250
< CREATE VIEW distal_promoter_element AS
---
> CREATE VIEW sequence_variant_causing_loss_of_function_of_polypeptide AS
29998c29252
<     feature_id AS distal_promoter_element_id,
---
>     feature_id AS sequence_variant_causing_loss_of_function_of_polypeptide_id,
30002c29256
<   WHERE cvterm.name = 'distal_promoter_element';
---
>   WHERE cvterm.name = 'sequence_variant_causing_inactive_ligand_binding_site' OR cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change' OR cvterm.name = 'sequence_variant_causing_partial_loss_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_inactive_catalytic_site' OR cvterm.name = 'sequence_variant_causing_loss_of_function_of_polypeptide';
30005c29259
< --- *** relation: bacterial_rnapol_promoter_sigma_70 ***
---
> --- *** relation: sequence_variant_causing_inactive_ligand_binding_site ***
30011c29265
< CREATE VIEW bacterial_rnapol_promoter_sigma_70 AS
---
> CREATE VIEW sequence_variant_causing_inactive_ligand_binding_site AS
30013c29267
<     feature_id AS bacterial_rnapol_promoter_sigma_70_id,
---
>     feature_id AS sequence_variant_causing_inactive_ligand_binding_site_id,
30017c29271
<   WHERE cvterm.name = 'bacterial_RNApol_promoter_sigma_70';
---
>   WHERE cvterm.name = 'sequence_variant_causing_inactive_catalytic_site' OR cvterm.name = 'sequence_variant_causing_inactive_ligand_binding_site';
30020c29274
< --- *** relation: bacterial_rnapol_promoter_sigma54 ***
---
> --- *** relation: sequence_variant_causing_inactive_catalytic_site ***
30026c29280
< CREATE VIEW bacterial_rnapol_promoter_sigma54 AS
---
> CREATE VIEW sequence_variant_causing_inactive_catalytic_site AS
30028c29282
<     feature_id AS bacterial_rnapol_promoter_sigma54_id,
---
>     feature_id AS sequence_variant_causing_inactive_catalytic_site_id,
30032c29286
<   WHERE cvterm.name = 'bacterial_RNApol_promoter_sigma54';
---
>   WHERE cvterm.name = 'sequence_variant_causing_inactive_catalytic_site';
30035c29289
< --- *** relation: minus_12_signal ***
---
> --- *** relation: sequence_variant_causing_polypeptide_localization_change ***
30038,30041d29291
< --- *** A conserved region about 12-bp upstream  ***
< --- *** of the start point of bacterial transcri ***
< --- *** ption units, involved with sigma factor  ***
< --- *** 54.                                      ***
30045c29295
< CREATE VIEW minus_12_signal AS
---
> CREATE VIEW sequence_variant_causing_polypeptide_localization_change AS
30047c29297
<     feature_id AS minus_12_signal_id,
---
>     feature_id AS sequence_variant_causing_polypeptide_localization_change_id,
30051c29301
<   WHERE cvterm.name = 'minus_12_signal';
---
>   WHERE cvterm.name = 'sequence_variant_causing_polypeptide_localization_change';
30054c29304
< --- *** relation: minus_24_signal ***
---
> --- *** relation: seq_variant_causing_polypeptide_post_trans_processing_change ***
30057,30060d29306
< --- *** A conserved region about 12-bp upstream  ***
< --- *** of the start point of bacterial transcri ***
< --- *** ption units, involved with sigma factor  ***
< --- *** 54.                                      ***
30064c29310
< CREATE VIEW minus_24_signal AS
---
> CREATE VIEW seq_variant_causing_polypeptide_post_trans_processing_change AS
30066c29312
<     feature_id AS minus_24_signal_id,
---
>     feature_id AS seq_variant_causing_polypeptide_post_trans_processing_change_id,
30070c29316
<   WHERE cvterm.name = 'minus_24_signal';
---
>   WHERE cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change';
30073c29319
< --- *** relation: a_box_type_1 ***
---
> --- *** relation: seq_variant_causing_part_loss_of_function_of_polypeptide ***
30076,30077d29321
< --- *** An A box within an RNA polymerase III ty ***
< --- *** pe 1 promoter.                           ***
30081c29325
< CREATE VIEW a_box_type_1 AS
---
> CREATE VIEW seq_variant_causing_part_loss_of_function_of_polypeptide AS
30083c29327
<     feature_id AS a_box_type_1_id,
---
>     feature_id AS seq_variant_causing_part_loss_of_function_of_polypeptide_id,
30087c29331
<   WHERE cvterm.name = 'A_box_type_1';
---
>   WHERE cvterm.name = 'sequence_variant_causing_partial_loss_of_function_of_polypeptide';
30090c29334
< --- *** relation: a_box_type_2 ***
---
> --- *** relation: sequence_variant_causing_gain_of_function_of_polypeptide ***
30093,30094d29336
< --- *** An A box within an RNA polymerase III ty ***
< --- *** pe 2 promoter.                           ***
30098c29340
< CREATE VIEW a_box_type_2 AS
---
> CREATE VIEW sequence_variant_causing_gain_of_function_of_polypeptide AS
30100c29342
<     feature_id AS a_box_type_2_id,
---
>     feature_id AS sequence_variant_causing_gain_of_function_of_polypeptide_id,
30104c29346
<   WHERE cvterm.name = 'A_box_type_2';
---
>   WHERE cvterm.name = 'sequence_variant_causing_gain_of_function_of_polypeptide';
30107c29349
< --- *** relation: intermediate_element ***
---
> --- *** relation: sequence_variant_affecting_transcript_secondary_structure ***
30110,30111c29352,29354
< --- *** A core promoter region of RNA polymerase ***
< --- ***  III type 1 promoters.                   ***
---
> --- *** A sequence variant that affects the seco ***
> --- *** ndary structure (folding) of the RNA tra ***
> --- *** nscript molecule.                        ***
30115c29358
< CREATE VIEW intermediate_element AS
---
> CREATE VIEW sequence_variant_affecting_transcript_secondary_structure AS
30117c29360
<     feature_id AS intermediate_element_id,
---
>     feature_id AS sequence_variant_affecting_transcript_secondary_structure_id,
30121c29364
<   WHERE cvterm.name = 'intermediate_element';
---
>   WHERE cvterm.name = 'sequence_variant_causing_compensatory_transcript_secondary_structure_mutation' OR cvterm.name = 'sequence_variant_affecting_transcript_secondary_structure';
30124c29367
< --- *** relation: regulatory_promoter_element ***
---
> --- *** relation: seq_variant_caus_compensatory_trans_secondary_structure_mut ***
30127,30129d29369
< --- *** A promoter element that is not part of t ***
< --- *** he core promoter, but provides the promo ***
< --- *** ter with a specific regulatory region.   ***
30133c29373
< CREATE VIEW regulatory_promoter_element AS
---
> CREATE VIEW seq_variant_caus_compensatory_trans_secondary_structure_mut AS
30135c29375
<     feature_id AS regulatory_promoter_element_id,
---
>     feature_id AS seq_variant_caus_compensatory_trans_secondary_structure_mut_id,
30139c29379
<   WHERE cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'regulatory_promoter_element';
---
>   WHERE cvterm.name = 'sequence_variant_causing_compensatory_transcript_secondary_structure_mutation';
30142,33778c29382
< --- *** relation: transcription_regulatory_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A regulatory region that is involved in  ***
< --- *** the control of the process of transcript ***
< --- *** ion.                                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW transcription_regulatory_region AS
<   SELECT
<     feature_id AS transcription_regulatory_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'intronic_regulatory_region' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'ISRE' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'transcription_regulatory_region';
< 
< --- ************************************************
< --- *** relation: translation_regulatory_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A regulatory region that is involved in  ***
< --- *** the control of the process of translatio ***
< --- *** n.                                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW translation_regulatory_region AS
<   SELECT
<     feature_id AS translation_regulatory_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'attenuator' OR cvterm.name = 'translation_regulatory_region';
< 
< --- ************************************************
< --- *** relation: recombination_regulatory_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A regulatory region that is involved in  ***
< --- *** the control of the process of recombinat ***
< --- *** ion.                                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW recombination_regulatory_region AS
<   SELECT
<     feature_id AS recombination_regulatory_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'recombination_regulatory_region';
< 
< --- ************************************************
< --- *** relation: replication_regulatory_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A regulatory region that is involved in  ***
< --- *** the control of the process of nucleotide ***
< --- ***  replication.                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW replication_regulatory_region AS
<   SELECT
<     feature_id AS replication_regulatory_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'replication_regulatory_region';
< 
< --- ************************************************
< --- *** relation: sequence_motif ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence motif is a nucleotide or amin ***
< --- *** o-acid sequence pattern that may have bi ***
< --- *** ological significance.                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW sequence_motif AS
<   SELECT
<     feature_id AS sequence_motif_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'nucleotide_motif' OR cvterm.name = 'DNA_motif' OR cvterm.name = 'RNA_motif' OR cvterm.name = 'PSE_motif' OR cvterm.name = 'CAAT_signal' OR cvterm.name = 'minus_10_signal' OR cvterm.name = 'minus_35_signal' OR cvterm.name = 'DRE_motif' OR cvterm.name = 'E_box_motif' OR cvterm.name = 'INR1_motif' OR cvterm.name = 'GAGA_motif' OR cvterm.name = 'octamer_motif' OR cvterm.name = 'retinoic_acid_responsive_element' OR cvterm.name = 'promoter_element' OR cvterm.name = 'DCE_SI' OR cvterm.name = 'DCE_SII' OR cvterm.name = 'DCE_SIII' OR cvterm.name = 'minus_12_signal' OR cvterm.name = 'minus_24_signal' OR cvterm.name = 'GC_rich_promoter_region' OR cvterm.name = 'DMv4_motif' OR cvterm.name = 'DMv5_motif' OR cvterm.name = 'DMv3_motif' OR cvterm.name = 'DMv2_motif' OR cvterm.name = 'DPE1_motif' OR cvterm.name = 'DMv1_motif' OR cvterm.name = 'NDM2_motif' OR cvterm.name = 'NDM3_motif' OR cvterm.name = 'core_promoter_element' OR cvterm.name = 'regulatory_promoter_element' OR cvterm.name = 'INR_motif' OR cvterm.name = 'DPE_motif' OR cvterm.name = 'BREu_motif' OR cvterm.name = 'TATA_box' OR cvterm.name = 'A_box' OR cvterm.name = 'B_box' OR cvterm.name = 'C_box' OR cvterm.name = 'MTE' OR cvterm.name = 'BREd_motif' OR cvterm.name = 'DCE' OR cvterm.name = 'intermediate_element' OR cvterm.name = 'RNA_polymerase_II_TATA_box' OR cvterm.name = 'RNA_polymerase_III_TATA_box' OR cvterm.name = 'A_box_type_1' OR cvterm.name = 'A_box_type_2' OR cvterm.name = 'proximal_promoter_element' OR cvterm.name = 'distal_promoter_element' OR cvterm.name = 'RNA_internal_loop' OR cvterm.name = 'A_minor_RNA_motif' OR cvterm.name = 'RNA_junction_loop' OR cvterm.name = 'hammerhead_ribozyme' OR cvterm.name = 'asymmetric_RNA_internal_loop' OR cvterm.name = 'symmetric_RNA_internal_loop' OR cvterm.name = 'K_turn_RNA_motif' OR cvterm.name = 'sarcin_like_RNA_motif' OR cvterm.name = 'RNA_hook_turn' OR cvterm.name = 'sequence_motif';
< 
< --- ************************************************
< --- *** relation: experimental_feature_attribute ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An attribute of an experimentally derive ***
< --- *** d feature.                               ***
< --- ************************************************
< ---
< 
< CREATE VIEW experimental_feature_attribute AS
<   SELECT
<     feature_id AS experimental_feature_attribute_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'score' OR cvterm.name = 'quality_value' OR cvterm.name = 'experimental_feature_attribute';
< 
< --- ************************************************
< --- *** relation: score ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The score of an experimentally derived f ***
< --- *** eature such as a p-value.                ***
< --- ************************************************
< ---
< 
< CREATE VIEW score AS
<   SELECT
<     feature_id AS score_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'score';
< 
< --- ************************************************
< --- *** relation: quality_value ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An experimental feature attribute that d ***
< --- *** efines the quality of the feature in a q ***
< --- *** uantitative way, such as a phred quality ***
< --- ***  score.                                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW quality_value AS
<   SELECT
<     feature_id AS quality_value_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'quality_value';
< 
< --- ************************************************
< --- *** relation: restriction_enzyme_recognition_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The nucleotide region (usually a palindr ***
< --- *** ome) that is recognized by a restriction ***
< --- ***  enzyme. This may or may not be equal to ***
< --- ***  the restriction enzyme binding site.    ***
< --- ************************************************
< ---
< 
< CREATE VIEW restriction_enzyme_recognition_site AS
<   SELECT
<     feature_id AS restriction_enzyme_recognition_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'blunt_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'sticky_end_restriction_enzyme_cleavage_site' OR cvterm.name = 'restriction_enzyme_recognition_site';
< 
< --- ************************************************
< --- *** relation: restriction_enzyme_cleavage_junction ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The boundary at which a restriction enzy ***
< --- *** me breaks the nucleotide sequence.       ***
< --- ************************************************
< ---
< 
< CREATE VIEW restriction_enzyme_cleavage_junction AS
<   SELECT
<     feature_id AS restriction_enzyme_cleavage_junction_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'blunt_end_restriction_enzyme_cleavage_junction' OR cvterm.name = 'single_strand_restriction_enzyme_cleavage_site' OR cvterm.name = 'five_prime_restriction_enzyme_junction' OR cvterm.name = 'three_prime_restriction_enzyme_junction' OR cvterm.name = 'restriction_enzyme_cleavage_junction';
< 
< --- ************************************************
< --- *** relation: five_prime_restriction_enzyme_junction ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The restriction enzyme cleavage junction ***
< --- ***  on the 5' strand of the nucleotide sequ ***
< --- *** ence.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW five_prime_restriction_enzyme_junction AS
<   SELECT
<     feature_id AS five_prime_restriction_enzyme_junction_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'five_prime_restriction_enzyme_junction';
< 
< --- ************************************************
< --- *** relation: three_prime_restriction_enzyme_junction ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW three_prime_restriction_enzyme_junction AS
<   SELECT
<     feature_id AS three_prime_restriction_enzyme_junction_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'three_prime_restriction_enzyme_junction';
< 
< --- ************************************************
< --- *** relation: blunt_end_restriction_enzyme_cleavage_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW blunt_end_restriction_enzyme_cleavage_site AS
<   SELECT
<     feature_id AS blunt_end_restriction_enzyme_cleavage_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'blunt_end_restriction_enzyme_cleavage_site';
< 
< --- ************************************************
< --- *** relation: sticky_end_restriction_enzyme_cleavage_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW sticky_end_restriction_enzyme_cleavage_site AS
<   SELECT
<     feature_id AS sticky_end_restriction_enzyme_cleavage_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'sticky_end_restriction_enzyme_cleavage_site';
< 
< --- ************************************************
< --- *** relation: blunt_end_restriction_enzyme_cleavage_junction ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A restriction enzyme cleavage site where ***
< --- ***  both strands are cut at the same positi ***
< --- *** on.                                      ***
< --- ************************************************
< ---
< 
< CREATE VIEW blunt_end_restriction_enzyme_cleavage_junction AS
<   SELECT
<     feature_id AS blunt_end_restriction_enzyme_cleavage_junction_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'blunt_end_restriction_enzyme_cleavage_junction';
< 
< --- ************************************************
< --- *** relation: single_strand_restriction_enzyme_cleavage_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A restriction enzyme cleavage site where ***
< --- *** by only one strand is cut.               ***
< --- ************************************************
< ---
< 
< CREATE VIEW single_strand_restriction_enzyme_cleavage_site AS
<   SELECT
<     feature_id AS single_strand_restriction_enzyme_cleavage_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'five_prime_restriction_enzyme_junction' OR cvterm.name = 'three_prime_restriction_enzyme_junction' OR cvterm.name = 'single_strand_restriction_enzyme_cleavage_site';
< 
< --- ************************************************
< --- *** relation: restriction_enzyme_single_strand_overhang ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A terminal region of DNA sequence where  ***
< --- *** the end of the region is not blunt ended ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW restriction_enzyme_single_strand_overhang AS
<   SELECT
<     feature_id AS restriction_enzyme_single_strand_overhang_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'restriction_enzyme_single_strand_overhang';
< 
< --- ************************************************
< --- *** relation: experimentally_defined_binding_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region that has been implicated in bin ***
< --- *** ding although the exact coordinates of b ***
< --- *** inding may be unknown.                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW experimentally_defined_binding_region AS
<   SELECT
<     feature_id AS experimentally_defined_binding_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'CHiP_seq_region' OR cvterm.name = 'experimentally_defined_binding_region';
< 
< --- ************************************************
< --- *** relation: chip_seq_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region of sequence identified by CHiP  ***
< --- *** seq technology to contain a protein bind ***
< --- *** ing site.                                ***
< --- ************************************************
< ---
< 
< CREATE VIEW chip_seq_region AS
<   SELECT
<     feature_id AS chip_seq_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'CHiP_seq_region';
< 
< --- ************************************************
< --- *** relation: aspe_primer ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** "A primer containing an SNV at the 3' en ***
< --- *** d for accurate genotyping.               ***
< --- ************************************************
< ---
< 
< CREATE VIEW aspe_primer AS
<   SELECT
<     feature_id AS aspe_primer_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'ASPE_primer';
< 
< --- ************************************************
< --- *** relation: dcaps_primer ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A primer with one or more mis-matches to ***
< --- ***  the DNA template corresponding to a pos ***
< --- *** ition within a restriction enzyme recogn ***
< --- *** ition site.                              ***
< --- ************************************************
< ---
< 
< CREATE VIEW dcaps_primer AS
<   SELECT
<     feature_id AS dcaps_primer_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'dCAPS_primer';
< 
< --- ************************************************
< --- *** relation: histone_modification ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Histone modification is a post translati ***
< --- *** onally modified region whereby residues  ***
< --- *** of the histone protein are modified by m ***
< --- *** ethylation, acetylation, phosphorylation ***
< --- *** , ubiquitination, sumoylation, citrullin ***
< --- *** ation, or ADP-ribosylation.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW histone_modification AS
<   SELECT
<     feature_id AS histone_modification_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'histone_modification';
< 
< --- ************************************************
< --- *** relation: histone_methylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A histone modification site where the mo ***
< --- *** dification is the methylation of the res ***
< --- *** idue.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW histone_methylation_site AS
<   SELECT
<     feature_id AS histone_methylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'histone_methylation_site';
< 
< --- ************************************************
< --- *** relation: histone_acetylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A histone modification where the modific ***
< --- *** ation is the acylation of the residue.   ***
< --- ************************************************
< ---
< 
< CREATE VIEW histone_acetylation_site AS
<   SELECT
<     feature_id AS histone_acetylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'histone_acetylation_site';
< 
< --- ************************************************
< --- *** relation: h3k9_acetylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 9th residue (a lysine), from th ***
< --- *** e start of the H3 histone protein is acy ***
< --- *** lated.                                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k9_acetylation_site AS
<   SELECT
<     feature_id AS h3k9_acetylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K9_acetylation_site';
< 
< --- ************************************************
< --- *** relation: h3k14_acetylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 14th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is ac ***
< --- *** ylated.                                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k14_acetylation_site AS
<   SELECT
<     feature_id AS h3k14_acetylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K14_acetylation_site';
< 
< --- ************************************************
< --- *** relation: h3k4_monomethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification, whereby  ***
< --- *** the 4th residue (a lysine), from the sta ***
< --- *** rt of the H3 protein is mono-methylated. ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k4_monomethylation_site AS
<   SELECT
<     feature_id AS h3k4_monomethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K4_monomethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k4_trimethylation ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 4th residue (a lysine), from th ***
< --- *** e start of the H3 protein is tri-methyla ***
< --- *** ted.                                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k4_trimethylation AS
<   SELECT
<     feature_id AS h3k4_trimethylation_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K4_trimethylation';
< 
< --- ************************************************
< --- *** relation: h3k9_trimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 9th residue (a lysine), from th ***
< --- *** e start of the H3 histone protein is tri ***
< --- *** -methylated.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k9_trimethylation_site AS
<   SELECT
<     feature_id AS h3k9_trimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K9_trimethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k27_monomethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 27th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is mo ***
< --- *** no-methylated.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k27_monomethylation_site AS
<   SELECT
<     feature_id AS h3k27_monomethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K27_monomethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k27_trimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 27th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is tr ***
< --- *** i-methylated.                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k27_trimethylation_site AS
<   SELECT
<     feature_id AS h3k27_trimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K27_trimethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k79_monomethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 79th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is mo ***
< --- *** no- methylated.                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k79_monomethylation_site AS
<   SELECT
<     feature_id AS h3k79_monomethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K79_monomethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k79_dimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 79th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is di ***
< --- *** -methylated.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k79_dimethylation_site AS
<   SELECT
<     feature_id AS h3k79_dimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K79_dimethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k79_trimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 79th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is tr ***
< --- *** i-methylated.                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k79_trimethylation_site AS
<   SELECT
<     feature_id AS h3k79_trimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K79_trimethylation_site';
< 
< --- ************************************************
< --- *** relation: h4k20_monomethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 20th residue (a lysine), from t ***
< --- *** he start of the H34histone protein is mo ***
< --- *** no-methylated.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW h4k20_monomethylation_site AS
<   SELECT
<     feature_id AS h4k20_monomethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H4K20_monomethylation_site';
< 
< --- ************************************************
< --- *** relation: h2bk5_monomethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 5th residue (a lysine), from th ***
< --- *** e start of the H2B protein is methylated ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW h2bk5_monomethylation_site AS
<   SELECT
<     feature_id AS h2bk5_monomethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H2BK5_monomethylation_site';
< 
< --- ************************************************
< --- *** relation: isre ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An ISRE is a transcriptional cis regulat ***
< --- *** ory region, containing the consensus reg ***
< --- *** ion: YAGTTTC(A/T)YTTTYCC, responsible fo ***
< --- *** r increased transcription via interferon ***
< --- ***  binding.                                ***
< --- ************************************************
< ---
< 
< CREATE VIEW isre AS
<   SELECT
<     feature_id AS isre_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'ISRE';
< 
< --- ************************************************
< --- *** relation: histone_ubiqitination_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A histone modification site where ubiqui ***
< --- *** tin may be added.                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW histone_ubiqitination_site AS
<   SELECT
<     feature_id AS histone_ubiqitination_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'histone_ubiqitination_site';
< 
< --- ************************************************
< --- *** relation: h2b_ubiquitination_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A histone modification site on H2B where ***
< --- ***  ubiquitin may be added.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW h2b_ubiquitination_site AS
<   SELECT
<     feature_id AS h2b_ubiquitination_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H2B_ubiquitination_site';
< 
< --- ************************************************
< --- *** relation: h3k18_acetylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 14th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is ac ***
< --- *** ylated.                                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k18_acetylation_site AS
<   SELECT
<     feature_id AS h3k18_acetylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K18_acetylation_site';
< 
< --- ************************************************
< --- *** relation: h3k23_acylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification, whereby  ***
< --- *** the 23rd residue (a lysine), from the st ***
< --- *** art of the H3 histone protein is acylate ***
< --- *** d.                                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k23_acylation_site AS
<   SELECT
<     feature_id AS h3k23_acylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K23_acylation site';
< 
< --- ************************************************
< --- *** relation: epigenetically_modified_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A biological region implicated in inheri ***
< --- *** ted changes caused by mechanisms other t ***
< --- *** han changes in the underlying DNA sequen ***
< --- *** ce.                                      ***
< --- ************************************************
< ---
< 
< CREATE VIEW epigenetically_modified_region AS
<   SELECT
<     feature_id AS epigenetically_modified_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'modified_base' OR cvterm.name = 'epigenetically_modified_gene' OR cvterm.name = 'histone_modification' OR cvterm.name = 'methylated_base_feature' OR cvterm.name = 'methylated_C' OR cvterm.name = 'methylated_A' OR cvterm.name = 'gene_rearranged_at_DNA_level' OR cvterm.name = 'maternally_imprinted_gene' OR cvterm.name = 'paternally_imprinted_gene' OR cvterm.name = 'allelically_excluded_gene' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'epigenetically_modified_region';
< 
< --- ************************************************
< --- *** relation: h3k27_acylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 27th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is ac ***
< --- *** ylated.                                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k27_acylation_site AS
<   SELECT
<     feature_id AS h3k27_acylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K27_acylation_site';
< 
< --- ************************************************
< --- *** relation: h3k36_monomethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 36th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is mo ***
< --- *** no-methylated.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k36_monomethylation_site AS
<   SELECT
<     feature_id AS h3k36_monomethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K36_monomethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k36_dimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 36th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is di ***
< --- *** methylated.                              ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k36_dimethylation_site AS
<   SELECT
<     feature_id AS h3k36_dimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K36_dimethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k36_trimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 36th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is tr ***
< --- *** i-methylated.                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k36_trimethylation_site AS
<   SELECT
<     feature_id AS h3k36_trimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K36_trimethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k4_dimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 4th residue (a lysine), from th ***
< --- *** e start of the H3 histone protein is di- ***
< --- *** methylated.                              ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k4_dimethylation_site AS
<   SELECT
<     feature_id AS h3k4_dimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K4_dimethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k27_dimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 27th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is di ***
< --- *** -methylated.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k27_dimethylation_site AS
<   SELECT
<     feature_id AS h3k27_dimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K27_dimethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k9_monomethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 9th residue (a lysine), from th ***
< --- *** e start of the H3 histone protein is mon ***
< --- *** o-methylated.                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k9_monomethylation_site AS
<   SELECT
<     feature_id AS h3k9_monomethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K9_monomethylation_site';
< 
< --- ************************************************
< --- *** relation: h3k9_dimethylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 9th residue (a lysine), from th ***
< --- *** e start of the H3 histone protein may be ***
< --- ***  dimethylated.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k9_dimethylation_site AS
<   SELECT
<     feature_id AS h3k9_dimethylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K9_dimethylation_site';
< 
< --- ************************************************
< --- *** relation: h4k16_acylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 16th residue (a lysine), from t ***
< --- *** he start of the H4 histone protein is ac ***
< --- *** ylated.                                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW h4k16_acylation_site AS
<   SELECT
<     feature_id AS h4k16_acylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H4K16_acylation_site';
< 
< --- ************************************************
< --- *** relation: h4k5_acylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 5th residue (a lysine), from th ***
< --- *** e start of the H4 histone protein is acy ***
< --- *** lated.                                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW h4k5_acylation_site AS
<   SELECT
<     feature_id AS h4k5_acylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H4K5_acylation_site';
< 
< --- ************************************************
< --- *** relation: h4k8_acylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 8th residue (a lysine), from th ***
< --- *** e start of the H4 histone protein is acy ***
< --- *** lated.                                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW h4k8_acylation_site AS
<   SELECT
<     feature_id AS h4k8_acylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H4K8_acylation site';
< 
< --- ************************************************
< --- *** relation: h3k27_methylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 27th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is me ***
< --- *** thylated.                                ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k27_methylation_site AS
<   SELECT
<     feature_id AS h3k27_methylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K27_methylation_site';
< 
< --- ************************************************
< --- *** relation: h3k36_methylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 36th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is me ***
< --- *** thylated.                                ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k36_methylation_site AS
<   SELECT
<     feature_id AS h3k36_methylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K36_methylation_site';
< 
< --- ************************************************
< --- *** relation: h3k4_methylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification, whereby  ***
< --- *** the 4th residue (a lysine), from the sta ***
< --- *** rt of the H3 protein is methylated.      ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k4_methylation_site AS
<   SELECT
<     feature_id AS h3k4_methylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K4_methylation_site';
< 
< --- ************************************************
< --- *** relation: h3k79_methylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 79th residue (a lysine), from t ***
< --- *** he start of the H3 histone protein is me ***
< --- *** thylated.                                ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k79_methylation_site AS
<   SELECT
<     feature_id AS h3k79_methylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K79_methylation_site';
< 
< --- ************************************************
< --- *** relation: h3k9_methylation_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A kind of histone modification site, whe ***
< --- *** reby the 9th residue (a lysine), from th ***
< --- *** e start of the H3 histone protein is met ***
< --- *** hylated.                                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW h3k9_methylation_site AS
<   SELECT
<     feature_id AS h3k9_methylation_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_methylation_site';
< 
< --- ************************************************
< --- *** relation: histone_acylation_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A histone modification, whereby the hist ***
< --- *** one protein is acylated at multiple site ***
< --- *** s in a region.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW histone_acylation_region AS
<   SELECT
<     feature_id AS histone_acylation_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'histone_acylation_region';
< 
< --- ************************************************
< --- *** relation: h4k_acylation_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region of the H4 histone whereby multi ***
< --- *** ple lysines are acylated.                ***
< --- ************************************************
< ---
< 
< CREATE VIEW h4k_acylation_region AS
<   SELECT
<     feature_id AS h4k_acylation_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'H4K_acylation_region';
< 
< --- ************************************************
< --- *** relation: gene_with_non_canonical_start_codon ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A gene with a start codon other than AUG ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_with_non_canonical_start_codon AS
<   SELECT
<     feature_id AS gene_with_non_canonical_start_codon_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_with_start_codon_CUG' OR cvterm.name = 'gene_with_non_canonical_start_codon';
< 
< --- ************************************************
< --- *** relation: gene_with_start_codon_cug ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A gene with a translational start codon  ***
< --- *** of CUG.                                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_with_start_codon_cug AS
<   SELECT
<     feature_id AS gene_with_start_codon_cug_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_with_start_codon_CUG';
< 
< --- ************************************************
< --- *** relation: pseudogenic_gene_segment ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A gene segment which when incorporated b ***
< --- *** y somatic recombination in the final gen ***
< --- *** e transcript results in a nonfunctional  ***
< --- *** product.                                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW pseudogenic_gene_segment AS
<   SELECT
<     feature_id AS pseudogenic_gene_segment_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'pseudogenic_gene_segment';
< 
< --- ************************************************
< --- *** relation: copy_number_gain ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence alteration whereby the copy n ***
< --- *** umber of a given regions is greater than ***
< --- ***  the reference sequence.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW copy_number_gain AS
<   SELECT
<     feature_id AS copy_number_gain_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'copy_number_gain';
< 
< --- ************************************************
< --- *** relation: copy_number_loss ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence alteration whereby the copy n ***
< --- *** umber of a given region is less than the ***
< --- ***  reference sequence.                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW copy_number_loss AS
<   SELECT
<     feature_id AS copy_number_loss_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'copy_number_loss';
< 
< --- ************************************************
< --- *** relation: upd ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Uniparental disomy is a sequence_alterat ***
< --- *** ion where a diploid individual receives  ***
< --- *** two copies for all or part of a chromoso ***
< --- *** me from one parent and no copies of the  ***
< --- *** same chromosome or region from the other ***
< --- ***  parent.                                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW upd AS
<   SELECT
<     feature_id AS upd_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'maternal_uniparental_disomy' OR cvterm.name = 'paternal_uniparental_disomy' OR cvterm.name = 'UPD';
< 
< --- ************************************************
< --- *** relation: maternal_uniparental_disomy ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Uniparental disomy is a sequence_alterat ***
< --- *** ion where a diploid individual receives  ***
< --- *** two copies for all or part of a chromoso ***
< --- *** me from the mother and no copies of the  ***
< --- *** same chromosome or region from the fathe ***
< --- *** r.                                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW maternal_uniparental_disomy AS
<   SELECT
<     feature_id AS maternal_uniparental_disomy_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'maternal_uniparental_disomy';
< 
< --- ************************************************
< --- *** relation: paternal_uniparental_disomy ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Uniparental disomy is a sequence_alterat ***
< --- *** ion where a diploid individual receives  ***
< --- *** two copies for all or part of a chromoso ***
< --- *** me from the father and no copies of the  ***
< --- *** same chromosome or region from the mothe ***
< --- *** r.                                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW paternal_uniparental_disomy AS
<   SELECT
<     feature_id AS paternal_uniparental_disomy_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'paternal_uniparental_disomy';
< 
< --- ************************************************
< --- *** relation: open_chromatin_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A DNA sequence that in the normal state  ***
< --- *** of the chromosome corresponds to an unfo ***
< --- *** lded, un-complexed stretch of double-str ***
< --- *** anded DNA.                               ***
< --- ************************************************
< ---
< 
< CREATE VIEW open_chromatin_region AS
<   SELECT
<     feature_id AS open_chromatin_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'open_chromatin_region';
< 
< --- ************************************************
< --- *** relation: sl3_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 3 RNA leader sequence to the 5' end of a ***
< --- *** n mRNA. SL3 acceptor sites occur in gene ***
< --- *** s in internal segments of polycistronic  ***
< --- *** transcripts.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl3_acceptor_site AS
<   SELECT
<     feature_id AS sl3_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL3_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl4_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 4 RNA leader sequence to the 5' end of a ***
< --- *** n mRNA. SL4 acceptor sites occur in gene ***
< --- *** s in internal segments of polycistronic  ***
< --- *** transcripts.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl4_acceptor_site AS
<   SELECT
<     feature_id AS sl4_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL4_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl5_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 5 RNA leader sequence to the 5' end of a ***
< --- *** n mRNA. SL5 acceptor sites occur in gene ***
< --- *** s in internal segments of polycistronic  ***
< --- *** transcripts.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl5_acceptor_site AS
<   SELECT
<     feature_id AS sl5_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL5_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl6_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 6 RNA leader sequence to the 5' end of a ***
< --- *** n mRNA. SL6 acceptor sites occur in gene ***
< --- *** s in internal segments of polycistronic  ***
< --- *** transcripts.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl6_acceptor_site AS
<   SELECT
<     feature_id AS sl6_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL6_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl7_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 7 RNA leader sequence to the 5' end of a ***
< --- *** n mRNA. SL7 acceptor sites occur in gene ***
< --- *** s in internal segments of polycistronic  ***
< --- *** transcripts.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl7_acceptor_site AS
<   SELECT
<     feature_id AS sl7_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL7_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl8_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 8 RNA leader sequence to the 5' end of a ***
< --- *** n mRNA. SL8 acceptor sites occur in gene ***
< --- *** s in internal segments of polycistronic  ***
< --- *** transcripts.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl8_acceptor_site AS
<   SELECT
<     feature_id AS sl8_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL8_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl9_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 9 RNA leader sequence to the 5' end of a ***
< --- *** n mRNA. SL9 acceptor sites occur in gene ***
< --- *** s in internal segments of polycistronic  ***
< --- *** transcripts.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl9_acceptor_site AS
<   SELECT
<     feature_id AS sl9_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL9_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl10_accceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 10 RNA leader sequence to the 5' end of  ***
< --- *** an mRNA. SL10 acceptor sites occur in ge ***
< --- *** nes in internal segments of polycistroni ***
< --- *** c transcripts.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl10_accceptor_site AS
<   SELECT
<     feature_id AS sl10_accceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL10_accceptor_site';
< 
< --- ************************************************
< --- *** relation: sl11_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 11 RNA leader sequence to the 5' end of  ***
< --- *** an mRNA. SL11 acceptor sites occur in ge ***
< --- *** nes in internal segments of polycistroni ***
< --- *** c transcripts.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl11_acceptor_site AS
<   SELECT
<     feature_id AS sl11_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL11_acceptor_site';
< 
< --- ************************************************
< --- *** relation: sl12_acceptor_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A SL2_acceptor_site which appends the SL ***
< --- *** 12 RNA leader sequence to the 5' end of  ***
< --- *** an mRNA. SL12 acceptor sites occur in ge ***
< --- *** nes in internal segments of polycistroni ***
< --- *** c transcripts.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW sl12_acceptor_site AS
<   SELECT
<     feature_id AS sl12_acceptor_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'SL12_acceptor_site';
< 
< --- ************************************************
< --- *** relation: duplicated_pseudogene ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A pseudogene that arose via gene duplica ***
< --- *** tion. Generally duplicated pseudogenes h ***
< --- *** ave the same structure as the original g ***
< --- *** ene, including intron-exon structure and ***
< --- ***  some regulatory sequence.               ***
< --- ************************************************
< ---
< 
< CREATE VIEW duplicated_pseudogene AS
<   SELECT
<     feature_id AS duplicated_pseudogene_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'duplicated_pseudogene';
< 
< --- ************************************************
< --- *** relation: unitary_pseudogene ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A pseudogene, deactivated from original  ***
< --- *** state by mutation, fixed in a population ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW unitary_pseudogene AS
<   SELECT
<     feature_id AS unitary_pseudogene_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'unitary_pseudogene';
< 
< --- ************************************************
< --- *** relation: non_processed_pseudogene ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A pseudogene that arose from a means oth ***
< --- *** er than retrotransposition.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW non_processed_pseudogene AS
<   SELECT
<     feature_id AS non_processed_pseudogene_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'pseudogene_by_unequal_crossing_over' OR cvterm.name = 'nuclear_mt_pseudogene' OR cvterm.name = 'cassette_pseudogene' OR cvterm.name = 'duplicated_pseudogene' OR cvterm.name = 'unitary_pseudogene' OR cvterm.name = 'non_processed_pseudogene';
< 
< --- ************************************************
< --- *** relation: variant_quality ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A dependent entity that inheres in a bea ***
< --- *** rer, a sequence variant.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW variant_quality AS
<   SELECT
<     feature_id AS variant_quality_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'variant_origin' OR cvterm.name = 'variant_frequency' OR cvterm.name = 'variant_phenotype' OR cvterm.name = 'maternal_variant' OR cvterm.name = 'paternal_variant' OR cvterm.name = 'somatic_variant' OR cvterm.name = 'germline_variant' OR cvterm.name = 'pedigree_specific_variant' OR cvterm.name = 'population_specific_variant' OR cvterm.name = 'de_novo_variant' OR cvterm.name = 'unique_variant' OR cvterm.name = 'rare_variant' OR cvterm.name = 'polymorphic_variant' OR cvterm.name = 'common_variant' OR cvterm.name = 'fixed_variant' OR cvterm.name = 'benign_variant' OR cvterm.name = 'disease_associated_variant' OR cvterm.name = 'disease_causing_variant' OR cvterm.name = 'lethal_variant' OR cvterm.name = 'quantitative_variant' OR cvterm.name = 'variant_quality';
< 
< --- ************************************************
< --- *** relation: variant_origin ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A quality inhering in a variant by virtu ***
< --- *** e of its origin.                         ***
< --- ************************************************
< ---
< 
< CREATE VIEW variant_origin AS
<   SELECT
<     feature_id AS variant_origin_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'maternal_variant' OR cvterm.name = 'paternal_variant' OR cvterm.name = 'somatic_variant' OR cvterm.name = 'germline_variant' OR cvterm.name = 'pedigree_specific_variant' OR cvterm.name = 'population_specific_variant' OR cvterm.name = 'de_novo_variant' OR cvterm.name = 'variant_origin';
< 
< --- ************************************************
< --- *** relation: variant_frequency ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A physical quality which inheres to the  ***
< --- *** variant by virtue of the number instance ***
< --- *** s of the variant within a population.    ***
< --- ************************************************
< ---
< 
< CREATE VIEW variant_frequency AS
<   SELECT
<     feature_id AS variant_frequency_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'unique_variant' OR cvterm.name = 'rare_variant' OR cvterm.name = 'polymorphic_variant' OR cvterm.name = 'common_variant' OR cvterm.name = 'fixed_variant' OR cvterm.name = 'variant_frequency';
< 
< --- ************************************************
< --- *** relation: unique_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A physical quality which inheres to the  ***
< --- *** variant by virtue of the number instance ***
< --- *** s of the variant within a population.    ***
< --- ************************************************
< ---
< 
< CREATE VIEW unique_variant AS
<   SELECT
<     feature_id AS unique_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'unique_variant';
< 
< --- ************************************************
< --- *** relation: rare_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW rare_variant AS
<   SELECT
<     feature_id AS rare_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'rare_variant';
< 
< --- ************************************************
< --- *** relation: polymorphic_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW polymorphic_variant AS
<   SELECT
<     feature_id AS polymorphic_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polymorphic_variant';
< 
< --- ************************************************
< --- *** relation: common_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW common_variant AS
<   SELECT
<     feature_id AS common_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'common_variant';
< 
< --- ************************************************
< --- *** relation: fixed_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW fixed_variant AS
<   SELECT
<     feature_id AS fixed_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'fixed_variant';
< 
< --- ************************************************
< --- *** relation: variant_phenotype ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A quality inhering in a variant by virtu ***
< --- *** e of its phenotype.                      ***
< --- ************************************************
< ---
< 
< CREATE VIEW variant_phenotype AS
<   SELECT
<     feature_id AS variant_phenotype_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'benign_variant' OR cvterm.name = 'disease_associated_variant' OR cvterm.name = 'disease_causing_variant' OR cvterm.name = 'lethal_variant' OR cvterm.name = 'quantitative_variant' OR cvterm.name = 'variant_phenotype';
< 
< --- ************************************************
< --- *** relation: benign_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW benign_variant AS
<   SELECT
<     feature_id AS benign_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'benign_variant';
< 
< --- ************************************************
< --- *** relation: disease_associated_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW disease_associated_variant AS
<   SELECT
<     feature_id AS disease_associated_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'disease_associated_variant';
< 
< --- ************************************************
< --- *** relation: disease_causing_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW disease_causing_variant AS
<   SELECT
<     feature_id AS disease_causing_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'disease_causing_variant';
< 
< --- ************************************************
< --- *** relation: lethal_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW lethal_variant AS
<   SELECT
<     feature_id AS lethal_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'lethal_variant';
< 
< --- ************************************************
< --- *** relation: quantitative_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW quantitative_variant AS
<   SELECT
<     feature_id AS quantitative_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'quantitative_variant';
< 
< --- ************************************************
< --- *** relation: maternal_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW maternal_variant AS
<   SELECT
<     feature_id AS maternal_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'maternal_variant';
< 
< --- ************************************************
< --- *** relation: paternal_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW paternal_variant AS
<   SELECT
<     feature_id AS paternal_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'paternal_variant';
< 
< --- ************************************************
< --- *** relation: somatic_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW somatic_variant AS
<   SELECT
<     feature_id AS somatic_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'somatic_variant';
< 
< --- ************************************************
< --- *** relation: germline_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW germline_variant AS
<   SELECT
<     feature_id AS germline_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'germline_variant';
< 
< --- ************************************************
< --- *** relation: pedigree_specific_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW pedigree_specific_variant AS
<   SELECT
<     feature_id AS pedigree_specific_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'pedigree_specific_variant';
< 
< --- ************************************************
< --- *** relation: population_specific_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW population_specific_variant AS
<   SELECT
<     feature_id AS population_specific_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'population_specific_variant';
< 
< --- ************************************************
< --- *** relation: de_novo_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW de_novo_variant AS
<   SELECT
<     feature_id AS de_novo_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'de_novo_variant';
< 
< --- ************************************************
< --- *** relation: tf_binding_site_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant located within a tran ***
< --- *** scription factor binding site.           ***
< --- ************************************************
< ---
< 
< CREATE VIEW tf_binding_site_variant AS
<   SELECT
<     feature_id AS tf_binding_site_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'TF_binding_site_variant';
< 
< --- ************************************************
< --- *** relation: missense_codon ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant whereby at least one  ***
< --- *** base of a codon is changed resulting in  ***
< --- *** a codon that encodes for a different ami ***
< --- *** no acid.                                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW missense_codon AS
<   SELECT
<     feature_id AS missense_codon_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'missense_codon';
< 
< --- ************************************************
< --- *** relation: complex_structural_alteration ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A structural sequence alteration where t ***
< --- *** here are multiple equally plausible expl ***
< --- *** anations for the change.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW complex_structural_alteration AS
<   SELECT
<     feature_id AS complex_structural_alteration_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'complex_structural_alteration';
< 
< --- ************************************************
< --- *** relation: structural_alteration ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW structural_alteration AS
<   SELECT
<     feature_id AS structural_alteration_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'complex_structural_alteration' OR cvterm.name = 'structural_alteration';
< 
< --- ************************************************
< --- *** relation: loss_of_heterozygosity ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW loss_of_heterozygosity AS
<   SELECT
<     feature_id AS loss_of_heterozygosity_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'loss_of_heterozygosity';
< 
< --- ************************************************
< --- *** relation: splice_donor_5th_base_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that causes a change  ***
< --- *** at the 5th base pair after the start of  ***
< --- *** the intron in the orientation of the tra ***
< --- *** nscript.                                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW splice_donor_5th_base_variant AS
<   SELECT
<     feature_id AS splice_donor_5th_base_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'splice_donor_5th_base_variant';
< 
< --- ************************************************
< --- *** relation: u_box ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An U-box is a conserved T-rich region up ***
< --- *** stream of a retroviral polypurine tract  ***
< --- *** that is involved in PPT primer creation  ***
< --- *** during reverse transcription.            ***
< --- ************************************************
< ---
< 
< CREATE VIEW u_box AS
<   SELECT
<     feature_id AS u_box_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'U_box';
< 
< --- ************************************************
< --- *** relation: mating_type_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A specialized region in the genomes of s ***
< --- *** ome yeast and fungi, the genes of which  ***
< --- *** regulate mating type.                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW mating_type_region AS
<   SELECT
<     feature_id AS mating_type_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'mating_type_region';
< 
< --- ************************************************
< --- *** relation: paired_end_fragment ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An assembly region that has been sequenc ***
< --- *** ed from both ends resulting in a read_pa ***
< --- *** ir (mate_pair).                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW paired_end_fragment AS
<   SELECT
<     feature_id AS paired_end_fragment_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'paired_end_fragment';
< 
< --- ************************************************
< --- *** relation: exon_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that changes exon seq ***
< --- *** uence.                                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW exon_variant AS
<   SELECT
<     feature_id AS exon_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'coding_sequence_variant' OR cvterm.name = 'non_coding_exon_variant' OR cvterm.name = 'codon_variant' OR cvterm.name = 'frameshift_variant' OR cvterm.name = 'inframe_variant' OR cvterm.name = 'initiator_codon_change' OR cvterm.name = 'non_synonymous_codon' OR cvterm.name = 'synonymous_codon' OR cvterm.name = 'terminal_codon_variant' OR cvterm.name = 'stop_gained' OR cvterm.name = 'missense_codon' OR cvterm.name = 'conservative_missense_codon' OR cvterm.name = 'non_conservative_missense_codon' OR cvterm.name = 'terminator_codon_variant' OR cvterm.name = 'incomplete_terminal_codon_variant' OR cvterm.name = 'stop_retained_variant' OR cvterm.name = 'stop_lost' OR cvterm.name = 'frame_restoring_variant' OR cvterm.name = 'minus_1_frameshift_variant' OR cvterm.name = 'minus_2_frameshift_variant' OR cvterm.name = 'plus_1_frameshift_variant' OR cvterm.name = 'plus_2_frameshift variant' OR cvterm.name = 'inframe_codon_gain' OR cvterm.name = 'inframe_codon_loss' OR cvterm.name = 'exon_variant';
< 
< --- ************************************************
< --- *** relation: non_coding_exon_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence variant that changes non-codi ***
< --- *** ng exon sequence.                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW non_coding_exon_variant AS
<   SELECT
<     feature_id AS non_coding_exon_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'non_coding_exon_variant';
< 
< --- ************************************************
< --- *** relation: clone_end ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A read from an end of the clone sequence ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW clone_end AS
<   SELECT
<     feature_id AS clone_end_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'clone_end';
< 
< --- ************************************************
< --- *** relation: point_centromere ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A point centromere is a relatively small ***
< --- ***  centromere (about 125 bp DNA) in discre ***
< --- *** te sequence, found in some yeast includi ***
< --- *** ng S. cerevisiae.                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW point_centromere AS
<   SELECT
<     feature_id AS point_centromere_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'point_centromere';
< 
< --- ************************************************
< --- *** relation: regional_centromere ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A regional centromere is a large modular ***
< --- ***  centromere found in fission yeast and h ***
< --- *** igher eukaryotes. It consist of a centra ***
< --- *** l core region flanked by inverted inner  ***
< --- *** and outer repeat regions.                ***
< --- ************************************************
< ---
< 
< CREATE VIEW regional_centromere AS
<   SELECT
<     feature_id AS regional_centromere_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'regional_centromere';
< 
< --- ************************************************
< --- *** relation: regional_centromere_central_core ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A conserved region within the central re ***
< --- *** gion of a modular centromere, where the  ***
< --- *** kinetochore is formed.                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW regional_centromere_central_core AS
<   SELECT
<     feature_id AS regional_centromere_central_core_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'regional_centromere_central_core';
< 
< --- ************************************************
< --- *** relation: centromeric_repeat ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A repeat region found within the modular ***
< --- ***  centromere.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW centromeric_repeat AS
<   SELECT
<     feature_id AS centromeric_repeat_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'regional_centromere_inner_repeat_region' OR cvterm.name = 'regional_centromere_outer_repeat_region' OR cvterm.name = 'centromeric_repeat';
< 
< --- ************************************************
< --- *** relation: regional_centromere_inner_repeat_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The inner repeat region of a modular cen ***
< --- *** tromere. This region is adjacent to the  ***
< --- *** central core, on each chromosome arm.    ***
< --- ************************************************
< ---
< 
< CREATE VIEW regional_centromere_inner_repeat_region AS
<   SELECT
<     feature_id AS regional_centromere_inner_repeat_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'regional_centromere_inner_repeat_region';
< 
< --- ************************************************
< --- *** relation: regional_centromere_outer_repeat_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The heterochromatic outer repeat region  ***
< --- *** of a modular centromere. These repeats e ***
< --- *** xist in tandem arrays on both chromosome ***
< --- ***  arms.                                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW regional_centromere_outer_repeat_region AS
<   SELECT
<     feature_id AS regional_centromere_outer_repeat_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'regional_centromere_outer_repeat_region';
< 
< --- ************************************************
< --- *** relation: tasirna ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The sequence of a 21 nucleotide double s ***
< --- *** tranded, polyadenylated non coding RNA,  ***
< --- *** transcribed from the TAS gene.           ***
< --- ************************************************
< ---
< 
< CREATE VIEW tasirna AS
<   SELECT
<     feature_id AS tasirna_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'tasiRNA';
< 
< --- ************************************************
< --- *** relation: tasirna_primary_transcript ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A primary transcript encoding a tasiRNA. ***
< --- ************************************************
< ---
< 
< CREATE VIEW tasirna_primary_transcript AS
<   SELECT
<     feature_id AS tasirna_primary_transcript_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'tasiRNA_primary_transcript';
< 
< --- ************************************************
< --- *** relation: increased_polyadenylation_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transcript processing variant whereby  ***
< --- *** polyadenylation of the encoded transcrip ***
< --- *** t is increased with respect to the refer ***
< --- *** ence.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW increased_polyadenylation_variant AS
<   SELECT
<     feature_id AS increased_polyadenylation_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'increased_polyadenylation_variant';
< 
< --- ************************************************
< --- *** relation: decreased_polyadenylation_variant ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transcript processing variant whereby  ***
< --- *** polyadenylation of the encoded transcrip ***
< --- *** t is decreased with respect to the refer ***
< --- *** ence.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW decreased_polyadenylation_variant AS
<   SELECT
<     feature_id AS decreased_polyadenylation_variant_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'decreased_polyadenylation_variant';
< 
< --- ************************************************
< --- *** relation: regulatory_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region of sequence that is involved in ***
< --- ***  the control of a biological process.    ***
< --- ************************************************
< ---
< 
< CREATE VIEW regulatory_region AS
<   SELECT
<     feature_id AS regulatory_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'transcription_regulatory_region' OR cvterm.name = 'translation_regulatory_region' OR cvterm.name = 'recombination_regulatory_region' OR cvterm.name = 'replication_regulatory_region' OR cvterm.name = 'terminator' OR cvterm.name = 'TF_binding_site' OR cvterm.name = 'polyA_signal_sequence' OR cvterm.name = 'gene_group_regulatory_region' OR cvterm.name = 'transcriptional_cis_regulatory_region' OR cvterm.name = 'splicing_regulatory_region' OR cvterm.name = 'cis_regulatory_frameshift_element' OR cvterm.name = 'intronic_regulatory_region' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'eukaryotic_terminator' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'terminator_of_type_2_RNApol_III_promoter' OR cvterm.name = 'operator' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'bacterial_terminator' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'rho_dependent_bacterial_terminator' OR cvterm.name = 'rho_independent_bacterial_terminator' OR cvterm.name = 'promoter' OR cvterm.name = 'insulator' OR cvterm.name = 'CRM' OR cvterm.name = 'promoter_targeting_sequence' OR cvterm.name = 'ISRE' OR cvterm.name = 'bidirectional_promoter' OR cvterm.name = 'RNA_polymerase_promoter' OR cvterm.name = 'RNApol_I_promoter' OR cvterm.name = 'RNApol_II_promoter' OR cvterm.name = 'RNApol_III_promoter' OR cvterm.name = 'bacterial_RNApol_promoter' OR cvterm.name = 'Phage_RNA_Polymerase_Promoter' OR cvterm.name = 'RNApol_II_core_promoter' OR cvterm.name = 'RNApol_III_promoter_type_1' OR cvterm.name = 'RNApol_III_promoter_type_2' OR cvterm.name = 'RNApol_III_promoter_type_3' OR cvterm.name = 'bacterial_RNApol_promoter_sigma_70' OR cvterm.name = 'bacterial_RNApol_promoter_sigma54' OR cvterm.name = 'SP6_RNA_Polymerase_Promoter' OR cvterm.name = 'T3_RNA_Polymerase_Promoter' OR cvterm.name = 'T7_RNA_Polymerase_Promoter' OR cvterm.name = 'locus_control_region' OR cvterm.name = 'enhancer' OR cvterm.name = 'silencer' OR cvterm.name = 'enhancer_bound_by_factor' OR cvterm.name = 'shadow_enhancer' OR cvterm.name = 'splice_enhancer' OR cvterm.name = 'intronic_splice_enhancer' OR cvterm.name = 'exonic_splice_enhancer' OR cvterm.name = 'attenuator' OR cvterm.name = 'regulatory_region';
< 
< --- ************************************************
< --- *** relation: u14_snorna_primary_transcript ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The primary transcript of an evolutionar ***
< --- *** ily conserved eukaryotic low molecular w ***
< --- *** eight RNA capable of intermolecular hybr ***
< --- *** idization with both homologous and heter ***
< --- *** ologous 18S rRNA.                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW u14_snorna_primary_transcript AS
<   SELECT
<     feature_id AS u14_snorna_primary_transcript_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'U14_snoRNA_primary_transcript';
< 
< --- ************************************************
< --- *** relation: methylation_guide_snorna ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A snoRNA that specifies the site of 2'-O ***
< --- *** -ribose methylation in an RNA molecule b ***
< --- *** y base pairing with a short sequence aro ***
< --- *** und the target residue.                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW methylation_guide_snorna AS
<   SELECT
<     feature_id AS methylation_guide_snorna_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'methylation_guide_snoRNA';
< 
< --- ************************************************
< --- *** relation: rrna_cleavage_rna ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An ncRNA that is part of a ribonucleopro ***
< --- *** tein that cleaves the primary pre-rRNA t ***
< --- *** ranscript in the process of producing ma ***
< --- *** ture rRNA molecules.                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW rrna_cleavage_rna AS
<   SELECT
<     feature_id AS rrna_cleavage_rna_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'rRNA_cleavage_RNA';
< 
< --- ************************************************
< --- *** relation: exon_of_single_exon_gene ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An exon that is the only exon in a gene. ***
< --- ************************************************
< ---
< 
< CREATE VIEW exon_of_single_exon_gene AS
<   SELECT
<     feature_id AS exon_of_single_exon_gene_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'exon_of_single_exon_gene';
< 
< --- ************************************************
< --- *** relation: cassette_array_member ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW cassette_array_member AS
<   SELECT
<     feature_id AS cassette_array_member_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'cassette_array_member';
< 
< --- ************************************************
< --- *** relation: gene_cassette_member ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_cassette_member AS
<   SELECT
<     feature_id AS gene_cassette_member_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'cassette_array_member' OR cvterm.name = 'gene_cassette_member';
< 
< --- ************************************************
< --- *** relation: gene_subarray_member ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_subarray_member AS
<   SELECT
<     feature_id AS gene_subarray_member_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_subarray_member';
< 
< --- ************************************************
< --- *** relation: primer_binding_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Non-covalent primer binding site for ini ***
< --- *** tiation of replication, transcription, o ***
< --- *** r reverse transcription.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW primer_binding_site AS
<   SELECT
<     feature_id AS primer_binding_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'primer_binding_site';
< 
< --- ************************************************
< --- *** relation: gene_array ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An array includes two or more genes, or  ***
< --- *** two or more gene subarrays, contiguously ***
< --- ***  arranged where the individual genes, or ***
< --- ***  subarrays, are either identical in sequ ***
< --- *** ence, or essentially so.                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_array AS
<   SELECT
<     feature_id AS gene_array_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_array';
< 
< --- ************************************************
< --- *** relation: gene_subarray ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A subarray is, by defintition, a member  ***
< --- *** of a gene array (SO:0005851); the member ***
< --- *** s of a subarray may differ substantially ***
< --- ***  in sequence, but are closely related in ***
< --- ***  function.                               ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_subarray AS
<   SELECT
<     feature_id AS gene_subarray_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_subarray';
< 
< --- ************************************************
< --- *** relation: gene_cassette ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A gene that can be substituted for a rel ***
< --- *** ated gene at a different site in the gen ***
< --- *** ome.                                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_cassette AS
<   SELECT
<     feature_id AS gene_cassette_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_cassette';
< 
< --- ************************************************
< --- *** relation: gene_cassette_array ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An array of non-functional genes whose m ***
< --- *** embers, when captured by recombination f ***
< --- *** orm functional genes.                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_cassette_array AS
<   SELECT
<     feature_id AS gene_cassette_array_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'gene_cassette_array';
< 
< --- ************************************************
< --- *** relation: gene_group ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A collection of related genes.           ***
< --- ************************************************
< ---
< 
< CREATE VIEW gene_group AS
<   SELECT
<     feature_id AS gene_group_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'operon' OR cvterm.name = 'mating_type_region' OR cvterm.name = 'gene_array' OR cvterm.name = 'gene_subarray' OR cvterm.name = 'gene_cassette_array' OR cvterm.name = 'regulon' OR cvterm.name = 'gene_group';
< 
< --- ************************************************
< --- *** relation: selenocysteine_trna_primary_transcript ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A primary transcript encoding seryl tRNA ***
< --- ***  (SO:000269).                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW selenocysteine_trna_primary_transcript AS
<   SELECT
<     feature_id AS selenocysteine_trna_primary_transcript_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'selenocysteine_tRNA_primary_transcript';
< 
< --- ************************************************
< --- *** relation: selenocysteinyl_trna ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A tRNA sequence that has a selenocystein ***
< --- *** e anticodon, and a 3' selenocysteine bin ***
< --- *** ding region.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW selenocysteinyl_trna AS
<   SELECT
<     feature_id AS selenocysteinyl_trna_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'selenocysteinyl_tRNA';
< 
< --- ************************************************
< --- *** relation: syntenic_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region in which two or more pairs of h ***
< --- *** omologous markers occur on the same chro ***
< --- *** mosome in two or more species.           ***
< --- ************************************************
< ---
< 
< CREATE VIEW syntenic_region AS
<   SELECT
<     feature_id AS syntenic_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'syntenic_region';
< 
< --- ************************************************
< --- *** relation: biochemical_region_of_peptide ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region of a peptide that is involved i ***
< --- *** n a biochemical function.                ***
< --- ************************************************
< ---
< 
< CREATE VIEW biochemical_region_of_peptide AS
<   SELECT
<     feature_id AS biochemical_region_of_peptide_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'biochemical_region_of_peptide';
< 
< --- ************************************************
< --- *** relation: molecular_contact_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region that is involved a contact with ***
< --- ***  another molecule.                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW molecular_contact_region AS
<   SELECT
<     feature_id AS molecular_contact_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'molecular_contact_region';
< 
< --- ************************************************
< --- *** relation: intrinsically_unstructured_polypeptide_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A region of polypeptide chain with high  ***
< --- *** conformational flexibility.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW intrinsically_unstructured_polypeptide_region AS
<   SELECT
<     feature_id AS intrinsically_unstructured_polypeptide_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'intrinsically_unstructured_polypeptide_region';
< 
< --- ************************************************
< --- *** relation: catmat_left_handed_three ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A motif of 3 consecutive residues with d ***
< --- *** ihedral angles as follows: res i: phi -9 ***
< --- *** 0 bounds -120 to -60, res i: psi -10 bou ***
< --- *** nds -50 to 30, res i+1: phi -75 bounds - ***
< --- *** 100 to -50, res i+1: psi 140 bounds 110  ***
< --- *** to 170. An extra restriction of the leng ***
< --- *** th of the O to O distance would be usefu ***
< --- *** l, that it be less than 5 Angstrom. More ***
< --- ***  precisely these two oxygens are the mai ***
< --- *** n chain carbonyl oxygen atoms of residue ***
< --- *** s i-1 and i+1.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW catmat_left_handed_three AS
<   SELECT
<     feature_id AS catmat_left_handed_three_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'catmat_left_handed_three';
< 
< --- ************************************************
< --- *** relation: catmat_left_handed_four ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A motif of 4 consecutive residues with d ***
< --- *** ihedral angles as follows: res i: phi -9 ***
< --- *** 0 bounds -120 to -60, res i psi -10 boun ***
< --- *** ds -50 to 30, res i+1: phi -90 bounds -1 ***
< --- *** 20 to -60, res i+1: psi -10 bounds -50 t ***
< --- *** o 30, res i+2: phi -75 bounds -100 to -5 ***
< --- *** 0, res i+2: psi 140 bounds 110 to 170.   ***
< --- *** The extra restriction of the length of t ***
< --- *** he O to O distance is similar, that it b ***
< --- *** e less than 5 Angstrom. In this case the ***
< --- *** se two Oxygen atoms are the main chain c ***
< --- *** arbonyl oxygen atoms of residues i-1 and ***
< --- ***  i+2.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW catmat_left_handed_four AS
<   SELECT
<     feature_id AS catmat_left_handed_four_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'catmat_left_handed_four';
< 
< --- ************************************************
< --- *** relation: catmat_right_handed_three ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A motif of 3 consecutive residues with d ***
< --- *** ihedral angles as follows: res i: phi -9 ***
< --- *** 0 bounds -120 to -60, res i: psi -10 bou ***
< --- *** nds -50 to 30, res i+1: phi -75 bounds - ***
< --- *** 100 to -50, res i+1: psi 140 bounds 110  ***
< --- *** to 170. An extra restriction of the leng ***
< --- *** th of the O to O distance would be usefu ***
< --- *** l, that it be less than 5 Angstrom. More ***
< --- ***  precisely these two oxygens are the mai ***
< --- *** n chain carbonyl oxygen atoms of residue ***
< --- *** s i-1 and i+1.                           ***
< --- ************************************************
< ---
< 
< CREATE VIEW catmat_right_handed_three AS
<   SELECT
<     feature_id AS catmat_right_handed_three_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'catmat_right_handed_three';
< 
< --- ************************************************
< --- *** relation: catmat_right_handed_four ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A motif of 4 consecutive residues with d ***
< --- *** ihedral angles as follows: res i: phi -9 ***
< --- *** 0 bounds -120 to -60, res i: psi -10 bou ***
< --- *** nds -50 to 30, res i+1: phi -90 bounds - ***
< --- *** 120 to -60, res i+1: psi -10 bounds -50  ***
< --- *** to 30, res i+2: phi -75 bounds -100 to - ***
< --- *** 50, res i+2: psi 140 bounds 110 to 170.  ***
< --- *** The extra restriction of the length of t ***
< --- *** he O to O distance is similar, that it b ***
< --- *** e less than 5 Angstrom. In this case the ***
< --- *** se two Oxygen atoms are the main chain c ***
< --- *** arbonyl oxygen atoms of residues i-1 and ***
< --- ***  i+2.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW catmat_right_handed_four AS
<   SELECT
<     feature_id AS catmat_right_handed_four_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'catmat_right_handed_four';
< 
< --- ************************************************
< --- *** relation: alpha_beta_motif ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A motif of five consecutive residues and ***
< --- ***  two H-bonds in which: H-bond between CO ***
< --- ***  of residue(i) and NH of residue(i+4), H ***
< --- *** -bond between CO of residue(i) and NH of ***
< --- ***  residue(i+3),Phi angles of residues(i+1 ***
< --- *** ), (i+2) and (i+3) are negative.         ***
< --- ************************************************
< ---
< 
< CREATE VIEW alpha_beta_motif AS
<   SELECT
<     feature_id AS alpha_beta_motif_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'alpha_beta_motif';
< 
< --- ************************************************
< --- *** relation: lipoprotein_signal_peptide ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A peptide that acts as a signal for both ***
< --- ***  membrane translocation and lipid attach ***
< --- *** ment in prokaryotes.                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW lipoprotein_signal_peptide AS
<   SELECT
<     feature_id AS lipoprotein_signal_peptide_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'lipoprotein_signal_peptide';
< 
< --- ************************************************
< --- *** relation: no_output ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An experimental region wherean analysis  ***
< --- *** has been run and not produced any annota ***
< --- *** tion.                                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW no_output AS
<   SELECT
<     feature_id AS no_output_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'no_output';
< 
< --- ************************************************
< --- *** relation: cleaved_peptide_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The cleaved_peptide_regon is the a regio ***
< --- *** n of peptide sequence that is cleaved du ***
< --- *** ring maturation.                         ***
< --- ************************************************
< ---
< 
< CREATE VIEW cleaved_peptide_region AS
<   SELECT
<     feature_id AS cleaved_peptide_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'cleaved_initiator_methionine' OR cvterm.name = 'intein' OR cvterm.name = 'propeptide_cleavage_site' OR cvterm.name = 'propeptide' OR cvterm.name = 'cleaved_for_gpi_anchor_region' OR cvterm.name = 'lipoprotein_signal_peptide' OR cvterm.name = 'n_terminal_region' OR cvterm.name = 'c_terminal_region' OR cvterm.name = 'central_hydrophobic_region_of_signal_peptide' OR cvterm.name = 'cleaved_peptide_region';
< 
< --- ************************************************
< --- *** relation: peptide_coil ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Irregular, unstructured regions of a pro ***
< --- *** tein's backbone, as distinct from the re ***
< --- *** gular region (namely alpha helix and bet ***
< --- *** a strand - characterised by specific pat ***
< --- *** terns of main-chain hydrogen bonds).     ***
< --- ************************************************
< ---
< 
< CREATE VIEW peptide_coil AS
<   SELECT
<     feature_id AS peptide_coil_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'peptide_coil';
< 
< --- ************************************************
< --- *** relation: hydrophobic_region_of_peptide ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Hydrophobic regions are regions with a l ***
< --- *** ow affinity for water.                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW hydrophobic_region_of_peptide AS
<   SELECT
<     feature_id AS hydrophobic_region_of_peptide_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'hydrophobic_region_of_peptide';
< 
< --- ************************************************
< --- *** relation: n_terminal_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The amino-terminal positively-charged re ***
< --- *** gion of a signal peptide (approx 1-5 aa) ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW n_terminal_region AS
<   SELECT
<     feature_id AS n_terminal_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'n_terminal_region';
< 
< --- ************************************************
< --- *** relation: c_terminal_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The more polar, carboxy-terminal region  ***
< --- *** of the signal peptide (approx 3-7 aa).   ***
< --- ************************************************
< ---
< 
< CREATE VIEW c_terminal_region AS
<   SELECT
<     feature_id AS c_terminal_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'c_terminal_region';
< 
< --- ************************************************
< --- *** relation: central_hydrophobic_region_of_signal_peptide ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The central, hydrophobic region of the s ***
< --- *** ignal peptide (approx 7-15 aa).          ***
< --- ************************************************
< ---
< 
< CREATE VIEW central_hydrophobic_region_of_signal_peptide AS
<   SELECT
<     feature_id AS central_hydrophobic_region_of_signal_peptide_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'central_hydrophobic_region_of_signal_peptide';
< 
< --- ************************************************
< --- *** relation: polypeptide_conserved_motif ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A conserved motif is a short (up to 20 a ***
< --- *** mino acids) region of biological interes ***
< --- *** t that is conserved in different protein ***
< --- *** s. They may or may not have functional o ***
< --- *** r structural significance within the pro ***
< --- *** teins in which they are found.           ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_conserved_motif AS
<   SELECT
<     feature_id AS polypeptide_conserved_motif_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_conserved_motif';
< 
< --- ************************************************
< --- *** relation: polypeptide_binding_motif ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A polypeptide binding motif is a short ( ***
< --- *** up to 20 amino acids) polypeptide region ***
< --- ***  of biological interest that contains on ***
< --- *** e or more amino acids experimentally sho ***
< --- *** wn to bind to a ligand.                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_binding_motif AS
<   SELECT
<     feature_id AS polypeptide_binding_motif_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_binding_motif';
< 
< --- ************************************************
< --- *** relation: polypeptide_catalytic_motif ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A polypeptide catalytic motif is a short ***
< --- ***  (up to 20 amino acids) polypeptide regi ***
< --- *** on that contains one or more active site ***
< --- ***  residues.                               ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_catalytic_motif AS
<   SELECT
<     feature_id AS polypeptide_catalytic_motif_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_catalytic_motif';
< 
< --- ************************************************
< --- *** relation: polypeptide_dna_contact ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A binding site that, in the polypeptide  ***
< --- *** molecule, interacts selectively and non- ***
< --- *** covalently with DNA.                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_dna_contact AS
<   SELECT
<     feature_id AS polypeptide_dna_contact_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_DNA_contact';
< 
< --- ************************************************
< --- *** relation: polypeptide_conserved_region ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A subsection of sequence with biological ***
< --- ***  interest that is conserved in different ***
< --- ***  proteins. They may or may not have func ***
< --- *** tional or structural significance within ***
< --- ***  the proteins in which they are found.   ***
< --- ************************************************
< ---
< 
< CREATE VIEW polypeptide_conserved_region AS
<   SELECT
<     feature_id AS polypeptide_conserved_region_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'polypeptide_domain' OR cvterm.name = 'polypeptide_motif' OR cvterm.name = 'polypeptide_repeat' OR cvterm.name = 'biochemical_region_of_peptide' OR cvterm.name = 'polypeptide_conserved_motif' OR cvterm.name = 'post_translationally_modified_region' OR cvterm.name = 'conformational_switch' OR cvterm.name = 'molecular_contact_region' OR cvterm.name = 'polypeptide_binding_motif' OR cvterm.name = 'polypeptide_catalytic_motif' OR cvterm.name = 'histone_modification' OR cvterm.name = 'histone_methylation_site' OR cvterm.name = 'histone_acetylation_site' OR cvterm.name = 'histone_ubiqitination_site' OR cvterm.name = 'histone_acylation_region' OR cvterm.name = 'H4K20_monomethylation_site' OR cvterm.name = 'H2BK5_monomethylation_site' OR cvterm.name = 'H3K27_methylation_site' OR cvterm.name = 'H3K36_methylation_site' OR cvterm.name = 'H3K4_methylation_site' OR cvterm.name = 'H3K79_methylation_site' OR cvterm.name = 'H3K9_methylation_site' OR cvterm.name = 'H3K27_monomethylation_site' OR cvterm.name = 'H3K27_trimethylation_site' OR cvterm.name = 'H3K27_dimethylation_site' OR cvterm.name = 'H3K36_monomethylation_site' OR cvterm.name = 'H3K36_dimethylation_site' OR cvterm.name = 'H3K36_trimethylation_site' OR cvterm.name = 'H3K4_monomethylation_site' OR cvterm.name = 'H3K4_trimethylation' OR cvterm.name = 'H3K4_dimethylation_site' OR cvterm.name = 'H3K79_monomethylation_site' OR cvterm.name = 'H3K79_dimethylation_site' OR cvterm.name = 'H3K79_trimethylation_site' OR cvterm.name = 'H3K9_trimethylation_site' OR cvterm.name = 'H3K9_monomethylation_site' OR cvterm.name = 'H3K9_dimethylation_site' OR cvterm.name = 'H3K9_acetylation_site' OR cvterm.name = 'H3K14_acetylation_site' OR cvterm.name = 'H3K18_acetylation_site' OR cvterm.name = 'H3K23_acylation site' OR cvterm.name = 'H3K27_acylation_site' OR cvterm.name = 'H4K16_acylation_site' OR cvterm.name = 'H4K5_acylation_site' OR cvterm.name = 'H4K8_acylation site' OR cvterm.name = 'H2B_ubiquitination_site' OR cvterm.name = 'H4K_acylation_region' OR cvterm.name = 'polypeptide_metal_contact' OR cvterm.name = 'protein_protein_contact' OR cvterm.name = 'polypeptide_ligand_contact' OR cvterm.name = 'polypeptide_DNA_contact' OR cvterm.name = 'polypeptide_calcium_ion_contact_site' OR cvterm.name = 'polypeptide_cobalt_ion_contact_site' OR cvterm.name = 'polypeptide_copper_ion_contact_site' OR cvterm.name = 'polypeptide_iron_ion_contact_site' OR cvterm.name = 'polypeptide_magnesium_ion_contact_site' OR cvterm.name = 'polypeptide_manganese_ion_contact_site' OR cvterm.name = 'polypeptide_molybdenum_ion_contact_site' OR cvterm.name = 'polypeptide_nickel_ion_contact_site' OR cvterm.name = 'polypeptide_tungsten_ion_contact_site' OR cvterm.name = 'polypeptide_zinc_ion_contact_site' OR cvterm.name = 'polypeptide_conserved_region';
< 
< --- ************************************************
< --- *** relation: substitution ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence alteration where the length o ***
< --- *** f the change in the variant is the same  ***
< --- *** as that of the reference.                ***
< --- ************************************************
< ---
< 
< CREATE VIEW substitution AS
<   SELECT
<     feature_id AS substitution_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'sequence_length_variation' OR cvterm.name = 'MNP' OR cvterm.name = 'SNV' OR cvterm.name = 'complex_substitution' OR cvterm.name = 'simple_sequence_length_variation' OR cvterm.name = 'SNP' OR cvterm.name = 'point_mutation' OR cvterm.name = 'transition' OR cvterm.name = 'transversion' OR cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'substitution';
< 
< --- ************************************************
< --- *** relation: complex_substitution ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** When no simple or well defined DNA mutat ***
< --- *** ion event describes the observed DNA cha ***
< --- *** nge, the keyword "complex" should be use ***
< --- *** d. Usually there are multiple equally pl ***
< --- *** ausible explanations for the change.     ***
< --- ************************************************
< ---
< 
< CREATE VIEW complex_substitution AS
<   SELECT
<     feature_id AS complex_substitution_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'complex_substitution';
< 
< --- ************************************************
< --- *** relation: point_mutation ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A single nucleotide change which has occ ***
< --- *** urred at the same position of a correspo ***
< --- *** nding nucleotide in a reference sequence ***
< --- *** .                                        ***
< --- ************************************************
< ---
< 
< CREATE VIEW point_mutation AS
<   SELECT
<     feature_id AS point_mutation_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'point_mutation';
< 
< --- ************************************************
< --- *** relation: transition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Change of a pyrimidine nucleotide, C or  ***
< --- *** T, into an other pyrimidine nucleotide,  ***
< --- *** or change of a purine nucleotide, A or G ***
< --- *** , into an other purine nucleotide.       ***
< --- ************************************************
< ---
< 
< CREATE VIEW transition AS
<   SELECT
<     feature_id AS transition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'pyrimidine_transition' OR cvterm.name = 'purine_transition' OR cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'transition';
< 
< --- ************************************************
< --- *** relation: pyrimidine_transition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A substitution of a pyrimidine, C or T,  ***
< --- *** for another pyrimidine.                  ***
< --- ************************************************
< ---
< 
< CREATE VIEW pyrimidine_transition AS
<   SELECT
<     feature_id AS pyrimidine_transition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'C_to_T_transition' OR cvterm.name = 'T_to_C_transition' OR cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'pyrimidine_transition';
< 
< --- ************************************************
< --- *** relation: c_to_t_transition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transition of a cytidine to a thymine. ***
< --- ************************************************
< ---
< 
< CREATE VIEW c_to_t_transition AS
<   SELECT
<     feature_id AS c_to_t_transition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'C_to_T_transition_at_pCpG_site' OR cvterm.name = 'C_to_T_transition';
< 
< --- ************************************************
< --- *** relation: c_to_t_transition_at_pcpg_site ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** The transition of cytidine to thymine oc ***
< --- *** curring at a pCpG site as a consequence  ***
< --- *** of the spontaneous deamination of 5'-met ***
< --- *** hylcytidine.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW c_to_t_transition_at_pcpg_site AS
<   SELECT
<     feature_id AS c_to_t_transition_at_pcpg_site_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'C_to_T_transition_at_pCpG_site';
< 
< --- ************************************************
< --- *** relation: t_to_c_transition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW t_to_c_transition AS
<   SELECT
<     feature_id AS t_to_c_transition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'T_to_C_transition';
< 
< --- ************************************************
< --- *** relation: purine_transition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A substitution of a purine, A or G, for  ***
< --- *** another purine.                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW purine_transition AS
<   SELECT
<     feature_id AS purine_transition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'A_to_G_transition' OR cvterm.name = 'G_to_A_transition' OR cvterm.name = 'purine_transition';
< 
< --- ************************************************
< --- *** relation: a_to_g_transition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transition of an adenine to a guanine. ***
< --- ************************************************
< ---
< 
< CREATE VIEW a_to_g_transition AS
<   SELECT
<     feature_id AS a_to_g_transition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'A_to_G_transition';
< 
< --- ************************************************
< --- *** relation: g_to_a_transition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transition of a guanine to an adenine. ***
< --- ************************************************
< ---
< 
< CREATE VIEW g_to_a_transition AS
<   SELECT
<     feature_id AS g_to_a_transition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'G_to_A_transition';
< 
< --- ************************************************
< --- *** relation: transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Change of a pyrimidine nucleotide, C or  ***
< --- *** T, into a purine nucleotide, A or G, or  ***
< --- *** vice versa.                              ***
< --- ************************************************
< ---
< 
< CREATE VIEW transversion AS
<   SELECT
<     feature_id AS transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'pyrimidine_to_purine_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion' OR cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'transversion';
< 
< --- ************************************************
< --- *** relation: pyrimidine_to_purine_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Change of a pyrimidine nucleotide, C or  ***
< --- *** T, into a purine nucleotide, A or G.     ***
< --- ************************************************
< ---
< 
< CREATE VIEW pyrimidine_to_purine_transversion AS
<   SELECT
<     feature_id AS pyrimidine_to_purine_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'C_to_A_transversion' OR cvterm.name = 'C_to_G_transversion' OR cvterm.name = 'T_to_A_transversion' OR cvterm.name = 'T_to_G_transversion' OR cvterm.name = 'pyrimidine_to_purine_transversion';
< 
< --- ************************************************
< --- *** relation: c_to_a_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transversion from cytidine to adenine. ***
< --- ************************************************
< ---
< 
< CREATE VIEW c_to_a_transversion AS
<   SELECT
<     feature_id AS c_to_a_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'C_to_A_transversion';
< 
< --- ************************************************
< --- *** relation: c_to_g_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- ************************************************
< ---
< 
< CREATE VIEW c_to_g_transversion AS
<   SELECT
<     feature_id AS c_to_g_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'C_to_G_transversion';
< 
< --- ************************************************
< --- *** relation: t_to_a_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transversion from T to A.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW t_to_a_transversion AS
<   SELECT
<     feature_id AS t_to_a_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'T_to_A_transversion';
< 
< --- ************************************************
< --- *** relation: t_to_g_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transversion from T to G.              ***
< --- ************************************************
< ---
< 
< CREATE VIEW t_to_g_transversion AS
<   SELECT
<     feature_id AS t_to_g_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'T_to_G_transversion';
< 
< --- ************************************************
< --- *** relation: purine_to_pyrimidine_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** Change of a purine nucleotide, A or G ,  ***
< --- *** into a pyrimidine nucleotide C or T.     ***
< --- ************************************************
< ---
< 
< CREATE VIEW purine_to_pyrimidine_transversion AS
<   SELECT
<     feature_id AS purine_to_pyrimidine_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'A_to_C_transversion' OR cvterm.name = 'A_to_T_transversion' OR cvterm.name = 'G_to_C_transversion' OR cvterm.name = 'G_to_T_transversion' OR cvterm.name = 'purine_to_pyrimidine_transversion';
< 
< --- ************************************************
< --- *** relation: a_to_c_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transversion from adenine to cytidine. ***
< --- ************************************************
< ---
< 
< CREATE VIEW a_to_c_transversion AS
<   SELECT
<     feature_id AS a_to_c_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'A_to_C_transversion';
< 
< --- ************************************************
< --- *** relation: a_to_t_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transversion from adenine to thymine.  ***
< --- ************************************************
< ---
< 
< CREATE VIEW a_to_t_transversion AS
<   SELECT
<     feature_id AS a_to_t_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'A_to_T_transversion';
< 
< --- ************************************************
< --- *** relation: g_to_c_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transversion from guanine to cytidine. ***
< --- ************************************************
< ---
< 
< CREATE VIEW g_to_c_transversion AS
<   SELECT
<     feature_id AS g_to_c_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'G_to_C_transversion';
< 
< --- ************************************************
< --- *** relation: g_to_t_transversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A transversion from guanine to thymine.  ***
< --- ************************************************
< ---
< 
< CREATE VIEW g_to_t_transversion AS
<   SELECT
<     feature_id AS g_to_t_transversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'G_to_T_transversion';
< 
< --- ************************************************
< --- *** relation: intrachromosomal_mutation ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A chromosomal structure variation within ***
< --- ***  a single chromosome.                    ***
< --- ************************************************
< ---
< 
< CREATE VIEW intrachromosomal_mutation AS
<   SELECT
<     feature_id AS intrachromosomal_mutation_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'intrachromosomal_mutation';
< 
< --- ************************************************
< --- *** relation: chromosomal_deletion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An incomplete chromosome.                ***
< --- ************************************************
< ---
< 
< CREATE VIEW chromosomal_deletion AS
<   SELECT
<     feature_id AS chromosomal_deletion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'chromosomal_deletion';
< 
< --- ************************************************
< --- *** relation: chromosomal_inversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An interchromosomal mutation where a reg ***
< --- *** ion of the chromosome is inverted with r ***
< --- *** espect to wild type.                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW chromosomal_inversion AS
<   SELECT
<     feature_id AS chromosomal_inversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'chromosomal_inversion';
< 
< --- ************************************************
< --- *** relation: interchromosomal_mutation ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A chromosomal structure variation whereb ***
< --- *** y more than one chromosome is involved.  ***
< --- ************************************************
< ---
< 
< CREATE VIEW interchromosomal_mutation AS
<   SELECT
<     feature_id AS interchromosomal_mutation_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_mutation';
< 
< --- ************************************************
< --- *** relation: indel ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A sequence alteration which included an  ***
< --- *** insertion and a deletion, affecting 2 or ***
< --- ***  more bases.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW indel AS
<   SELECT
<     feature_id AS indel_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'indel';
< 
< --- ************************************************
< --- *** relation: duplication ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** One or more nucleotides are added betwee ***
< --- *** n two adjacent nucleotides in the sequen ***
< --- *** ce; the inserted sequence derives from,  ***
< --- *** or is identical in sequence to, nucleoti ***
< --- *** des adjacent to insertion point.         ***
< --- ************************************************
< ---
< 
< CREATE VIEW duplication AS
<   SELECT
<     feature_id AS duplication_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'tandem_duplication' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'duplication';
< 
< --- ************************************************
< --- *** relation: inversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A continuous nucleotide sequence is inve ***
< --- *** rted in the same position.               ***
< --- ************************************************
< ---
< 
< CREATE VIEW inversion AS
<   SELECT
<     feature_id AS inversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inversion';
< 
< --- ************************************************
< --- *** relation: chromosomal_duplication ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An extra chromosome.                     ***
< --- ************************************************
< ---
< 
< CREATE VIEW chromosomal_duplication AS
<   SELECT
<     feature_id AS chromosomal_duplication_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'chromosomal_duplication';
< 
< --- ************************************************
< --- *** relation: intrachromosomal_duplication ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A duplication that occurred within a chr ***
< --- *** omosome.                                 ***
< --- ************************************************
< ---
< 
< CREATE VIEW intrachromosomal_duplication AS
<   SELECT
<     feature_id AS intrachromosomal_duplication_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'intrachromosomal_duplication';
< 
< --- ************************************************
< --- *** relation: direct_tandem_duplication ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A tandem duplication where the individua ***
< --- *** l regions are in the same orientation.   ***
< --- ************************************************
< ---
< 
< CREATE VIEW direct_tandem_duplication AS
<   SELECT
<     feature_id AS direct_tandem_duplication_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'direct_tandem_duplication';
< 
< --- ************************************************
< --- *** relation: inverted_tandem_duplication ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A tandem duplication where the individua ***
< --- *** l regions are not in the same orientatio ***
< --- *** n.                                       ***
< --- ************************************************
< ---
< 
< CREATE VIEW inverted_tandem_duplication AS
<   SELECT
<     feature_id AS inverted_tandem_duplication_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inverted_tandem_duplication';
< 
< --- ************************************************
< --- *** relation: intrachromosomal_transposition ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A chromosome structure variation whereby ***
< --- ***  a transposition occurred within a chrom ***
< --- *** osome.                                   ***
< --- ************************************************
< ---
< 
< CREATE VIEW intrachromosomal_transposition AS
<   SELECT
<     feature_id AS intrachromosomal_transposition_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'intrachromosomal_transposition';
< 
< --- ************************************************
< --- *** relation: compound_chromosome ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A chromosome structure variant where a m ***
< --- *** onocentric element is caused by the fusi ***
< --- *** on of two chromosome arms.               ***
< --- ************************************************
< ---
< 
< CREATE VIEW compound_chromosome AS
<   SELECT
<     feature_id AS compound_chromosome_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'compound_chromosome';
< 
< --- ************************************************
< --- *** relation: robertsonian_fusion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A non reciprocal translocation whereby t ***
< --- *** he participating chromosomes break at th ***
< --- *** eir centromeres and the long arms fuse t ***
< --- *** o form a single chromosome with a single ***
< --- ***  centromere.                             ***
< --- ************************************************
< ---
< 
< CREATE VIEW robertsonian_fusion AS
<   SELECT
<     feature_id AS robertsonian_fusion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'Robertsonian_fusion';
< 
< --- ************************************************
< --- *** relation: chromosomal_translocation ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** An interchromosomal mutation. Rearrangem ***
< --- *** ents that alter the pairing of telomeres ***
< --- ***  are classified as translocations.       ***
< --- ************************************************
< ---
< 
< CREATE VIEW chromosomal_translocation AS
<   SELECT
<     feature_id AS chromosomal_translocation_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'chromosomal_translocation';
< 
< --- ************************************************
< --- *** relation: ring_chromosome ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A ring chromosome is a chromosome whose  ***
< --- *** arms have fused together to form a ring, ***
< --- ***  often with the loss of the ends of the  ***
< --- *** chromosome.                              ***
< --- ************************************************
< ---
< 
< CREATE VIEW ring_chromosome AS
<   SELECT
<     feature_id AS ring_chromosome_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'ring_chromosome';
< 
< --- ************************************************
< --- *** relation: pericentric_inversion ***
< --- *** relation type: VIEW                      ***
< --- ***                                          ***
< --- *** A chromosomal inversion that includes th ***
< --- *** e centromere.                            ***
< --- ************************************************
< ---
< 
< CREATE VIEW pericentric_inversion AS
<   SELECT
<     feature_id AS pericentric_inversion_id,
<     feature.*
<   FROM
<     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
<   WHERE cvterm.name = 'pericentric_inversion';
< 
< --- ************************************************
< --- *** relation: paracentric_inversion ***
---
> --- *** relation: sequence_variant_effect ***
33781,33782c29385,29386
< --- *** A chromosomal inversion that does not in ***
< --- *** clude the centromere.                    ***
---
> --- *** The effect of a change in nucleotide seq ***
> --- *** uence.                                   ***
33786c29390
< CREATE VIEW paracentric_inversion AS
---
> CREATE VIEW sequence_variant_effect AS
33788c29392
<     feature_id AS paracentric_inversion_id,
---
>     feature_id AS sequence_variant_effect_id,
33792c29396
<   WHERE cvterm.name = 'paracentric_inversion';
---
>   WHERE cvterm.name = 'sequence_variant_affecting_regulatory_region' OR cvterm.name = 'silent_mutation' OR cvterm.name = 'sequence_variant_affecting_copy_number' OR cvterm.name = 'sequence_variation_affecting_transcript' OR cvterm.name = 'sequence_variant_affecting_splicing' OR cvterm.name = 'sequence_variant_affecting_translational_product' OR cvterm.name = 'sequence_variant_affecting_gene_structure' OR cvterm.name = 'sequence_variant_causing_no_change_in_transcript' OR cvterm.name = 'sequence_variation_affecting_complex_change_in_transcript' OR cvterm.name = 'sequence_variant_affecting_transcription' OR cvterm.name = 'sequence_variation_affecting_transcript_sequence' OR cvterm.name = 'sequence_variation_affecting_level_of_transcript' OR cvterm.name = 'sequence_variant_causing_uncharacterised_change_in_transcript' OR cvterm.name = 'sequence_variant_affecting_rate_of_transcription' OR cvterm.name = 'sequence_variant_decreasing_rate_of_transcription' OR cvterm.name = 'sequence_variant_increasing_rate_of_transcription' OR cvterm.name = 'sequence_variation_affecting_coding_sequence' OR cvterm.name = 'sequence_variant_affecting_transcript_processing' OR cvterm.name = 'sequence variant_affecting_transcript_stability' OR cvterm.name = 'sequence_variant_affecting_transcript_secondary_structure' OR cvterm.name = 'sequence_variant_causing_amino_acid_coding_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_terminator_codon_change_in_transcript' OR cvterm.name = 'sequence_variation_affecting_reading_frame' OR cvterm.name = 'sequence_variant_causing_initiator_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_non_synonymous_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonsense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_conservative_missense_codon_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_nonconservative_missense_codon_change_in_transcript' OR cvterm.name = 'frameshift_sequence_variation' OR cvterm.name = 'sequence_variant_causing_plus_1_frameshift_mutation' OR cvterm.name = 'sequence_variant_causing_minus_1_frameshift' OR cvterm.name = 'sequence_variant_causing_plus_2_frameshift' OR cvterm.name = 'sequence_variant_causing_minus_2_frameshift' OR cvterm.name = 'frame_restoring_sequence_variant' OR cvterm.name = 'sequence_variant_affecting_polyadenylation' OR cvterm.name = 'sequence_variant_affecting_editing' OR cvterm.name = 'sequence_variant_increasing_transcript_stability' OR cvterm.name = 'sequence_variant_decreasing_transcript_stability' OR cvterm.name = 'sequence_variant_causing_compensatory_transcript_secondary_structure_mutation' OR cvterm.name = 'sequence_variation_decreasing_level_of_transcript' OR cvterm.name = 'sequence_variation_increasing_level_of_transcript' OR cvterm.name = 'sequence_variant_causing_partially_characterised_change_in_transcript' OR cvterm.name = 'sequence_variant_affecting_splice_donor' OR cvterm.name = 'sequence_variant_affecting_splice_acceptor' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_activation' OR cvterm.name = 'sequence_variant_causes_exon_loss' OR cvterm.name = 'sequence_variant_causes_intron_gain' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_donor_activation' OR cvterm.name = 'sequence_variant_causing_cryptic_splice_acceptor_activation' OR cvterm.name = 'sequence_variant_causing_no_change_of_translational_product' OR cvterm.name = 'sequence_variant_causing_uncharacterised_change_of_translational_product' OR cvterm.name = 'sequence_variant_causing_complex_change_of_translational_product' OR cvterm.name = 'sequence_variant_affecting_level_of_translational_product' OR cvterm.name = 'sequence_variant_affecting_polypeptide_amino_acid_sequence' OR cvterm.name = 'sequence_variant_affecting_3D_structure_of_polypeptide' OR cvterm.name = 'sequence_variant_affecting_polypeptide_function' OR cvterm.name = 'sequence_variant_causing_partially_characterised_change_of_translational_product' OR cvterm.name = 'sequence_variant_decreasing_level_of_translation_product' OR cvterm.name = 'sequence_variant_increasing_level_of_translation_product' OR cvterm.name = 'sequence_variant_causing_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_amino_acid_insertion' OR cvterm.name = 'sequence_variant_causing_amino_acid_deletion' OR cvterm.name = 'sequence_variant_causing_polypeptide_truncation' OR cvterm.name = 'sequence_variant_causing_polypeptide_elongation' OR cvterm.name = 'sequence_variant_causing_polypeptide_fusion' OR cvterm.name = 'sequence_variant_causing_conservative_amino_acid_substitution' OR cvterm.name = 'sequence_variant_causing_nonconservative_amino_acid_substitution' OR cvterm.name = 'mutation_causing_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_inframe_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_N_terminal_elongation' OR cvterm.name = 'mutaton_causing_inframe_polypeptide_C_terminal_elongation' OR cvterm.name = 'mutation_causing_out_of_frame_polypeptide_C_terminal_elongation' OR cvterm.name = 'sequence_variant_causing_no_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_uncharacterised_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_complex_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_conformational_change' OR cvterm.name = 'sequence_variant_causing_partially_characterised_3D_structural_change' OR cvterm.name = 'sequence_variant_causing_loss_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_polypeptide_localization_change' OR cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change' OR cvterm.name = 'sequence_variant_causing_gain_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_inactive_ligand_binding_site' OR cvterm.name = 'sequence_variant_causing_polypeptide_post_translational_processing_change' OR cvterm.name = 'sequence_variant_causing_partial_loss_of_function_of_polypeptide' OR cvterm.name = 'sequence_variant_causing_inactive_catalytic_site' OR cvterm.name = 'sequence_variant_causing_gene_fusion' OR cvterm.name = 'sequence_variant_effect';
33795c29399
< --- *** relation: reciprocal_chromosomal_translocation ***
---
> --- *** relation: sequence_variant_causing_polypeptide_fusion ***
33798,33800d29401
< --- *** A chromosomal translocation with two bre ***
< --- *** aks; two chromosome segments have simply ***
< --- ***  been exchanged.                         ***
33804c29405
< CREATE VIEW reciprocal_chromosomal_translocation AS
---
> CREATE VIEW sequence_variant_causing_polypeptide_fusion AS
33806c29407
<     feature_id AS reciprocal_chromosomal_translocation_id,
---
>     feature_id AS sequence_variant_causing_polypeptide_fusion_id,
33810c29411
<   WHERE cvterm.name = 'reciprocal_chromosomal_translocation';
---
>   WHERE cvterm.name = 'sequence_variant_causing_polypeptide_fusion';
33816,33819d29416
< --- *** An autosynaptic chromosome is the aneupl ***
< --- *** oid product of recombination between a p ***
< --- *** ericentric inversion and a cytologically ***
< --- ***  wild-type chromosome.                   ***
33835,33838d29431
< --- *** A compound chromosome whereby two copies ***
< --- ***  of the same chromosomal arm attached to ***
< --- ***  a common centromere. The chromosome is  ***
< --- *** diploid for the arm involved.            ***
33854,33856d29446
< --- *** A compound chromosome whereby two arms f ***
< --- *** rom different chromosomes are connected  ***
< --- *** through the centromere of one of them.   ***
33872,33873d29461
< --- *** A chromosome that occurred by the divisi ***
< --- *** on of a larger chromosome.               ***
33889,33890d29476
< --- *** An autosynaptic chromosome carrying the  ***
< --- *** two right (D = dextro) telomeres.        ***
33906,33907d29491
< --- *** LS is an autosynaptic chromosome carryin ***
< --- *** g the two left (L = levo) telomeres.     ***
33923,33925d29506
< --- *** A chromosome structure variation whereby ***
< --- ***  the duplicated sequences are carried as ***
< --- ***  a free centric element.                 ***
33941,33942d29521
< --- *** A ring chromosome which is a copy of ano ***
< --- *** ther chromosome.                         ***
33958,33959d29536
< --- *** A chromosome structure variant with 4 or ***
< --- ***  more breakpoints.                       ***
33975,33978c29552,29554
< --- *** A chromosomal deletion whereby a translo ***
< --- *** cation occurs in which one of the four b ***
< --- *** roken ends loses a segment before re-joi ***
< --- *** ning.                                    ***
---
> --- *** A translocation in which one of the four ***
> --- ***  broken ends loses a segment before re-j ***
> --- *** oining.                                  ***
33994,34002c29570,29577
< --- *** A chromosomal translocation whereby the  ***
< --- *** first two breaks are in the same chromos ***
< --- *** ome, and the region between them is rejo ***
< --- *** ined in inverted order to the other side ***
< --- ***  of the first break, such that both side ***
< --- *** s of break one are present on the same c ***
< --- *** hromosome. The remaining free ends are j ***
< --- *** oined as a translocation with those resu ***
< --- *** lting from the third break.              ***
---
> --- *** The first two breaks are in the same chr ***
> --- *** omosome, and the region between them is  ***
> --- *** rejoined in inverted order to the other  ***
> --- *** side of the first break, such that both  ***
> --- *** sides of break one are present on the sa ***
> --- *** me chromosome. The remaining free ends a ***
> --- *** re joined as a translocation with those  ***
> --- *** resulting from the third break.          ***
34012c29587
<   WHERE cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'inversion_cum_translocation';
---
>   WHERE cvterm.name = 'inversion_cum_translocation';
34018,34023c29593,29597
< --- *** An interchromosomal mutation whereby the ***
< --- ***  (large) region between the first two br ***
< --- *** eaks listed is lost, and the two flankin ***
< --- *** g segments (one of them centric) are joi ***
< --- *** ned as a translocation to the free ends  ***
< --- *** resulting from the third break.          ***
---
> --- *** The (large) region between the first two ***
> --- ***  breaks listed is lost, and the two flan ***
> --- *** king segments (one of them centric) are  ***
> --- *** joined as a translocation to the free en ***
> --- *** ds resulting from the third break.       ***
34039,34044c29613,29617
< --- *** A chromosomal translocation whereby thre ***
< --- *** e breaks occurred in three different chr ***
< --- *** omosomes. The centric segment resulting  ***
< --- *** from the first break listed is joined to ***
< --- ***  the acentric segment resulting from the ***
< --- ***  second, rather than the third.          ***
---
> --- *** Three breaks in three different chromoso ***
> --- *** mes. The centric segment resulting from  ***
> --- *** the first break listed is joined to the  ***
> --- *** acentric segment resulting from the seco ***
> --- *** nd, rather than the third.               ***
34060,34063c29633,29635
< --- *** A chromosomal inversion caused by three  ***
< --- *** breaks in the same chromosome; both cent ***
< --- *** ral segments are inverted in place (i.e. ***
< --- *** , they are not transposed).              ***
---
> --- *** Three breaks in the same chromosome; bot ***
> --- *** h central segments are inverted in place ***
> --- ***  (i.e., they are not transposed).        ***
34079,34084c29651,29655
< --- *** An insertional duplication where a copy  ***
< --- *** of the segment between the first two bre ***
< --- *** aks listed is inserted at the third brea ***
< --- *** k; the insertion is in cytologically the ***
< --- ***  same orientation as its flanking segmen ***
< --- *** ts.                                      ***
---
> --- *** A copy of the segment between the first  ***
> --- *** two breaks listed is inserted at the thi ***
> --- *** rd break; the insertion is in cytologica ***
> --- *** lly the same orientation as its flanking ***
> --- ***  segments.                               ***
34100,34105c29671,29675
< --- *** An insertional duplication where a copy  ***
< --- *** of the segment between the first two bre ***
< --- *** aks listed is inserted at the third brea ***
< --- *** k; the insertion is in cytologically inv ***
< --- *** erted orientation with respect to its fl ***
< --- *** anking segments.                         ***
---
> --- *** A copy of the segment between the first  ***
> --- *** two breaks listed is inserted at the thi ***
> --- *** rd break; the insertion is in cytologica ***
> --- *** lly inverted orientation with respect to ***
> --- ***  its flanking segments.                  ***
34122,34123c29692
< --- *** nsertion of a duplicated region (as oppo ***
< --- *** sed to a free duplication).              ***
---
> --- *** nsertion of a duplicated region.         ***
34139,34141d29707
< --- *** A chromosome structure variation whereby ***
< --- ***  a transposition occurred between chromo ***
< --- *** somes.                                   ***
34151c29717
<   WHERE cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition';
---
>   WHERE cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unorientated_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition';
34157,34162d29722
< --- *** An interchromosomal transposition whereb ***
< --- *** y a copy of the segment between the firs ***
< --- *** t two breaks listed is inserted at the t ***
< --- *** hird break; the insertion is in cytologi ***
< --- *** cally inverted orientation with respect  ***
< --- *** to its flanking segment.                 ***
34178,34183d29737
< --- *** An interchromosomal transition where the ***
< --- ***  segment between the first two breaks li ***
< --- *** sted is removed and inserted at the thir ***
< --- *** d break; the insertion is in cytological ***
< --- *** ly the same orientation as its flanking  ***
< --- *** segments.                                ***
34199,34204c29753,29757
< --- *** An intrachromosomal transposition whereb ***
< --- *** y the segment between the first two brea ***
< --- *** ks listed is removed and inserted at the ***
< --- ***  third break; the insertion is in cytolo ***
< --- *** gically inverted orientation with respec ***
< --- *** t to its flanking segments.              ***
---
> --- *** The segment between the first two breaks ***
> --- ***  listed is removed and inserted at the t ***
> --- *** hird break; the insertion is in cytologi ***
> --- *** cally inverted orientation with respect  ***
> --- *** to its flanking segments.                ***
34220,34225c29773,29777
< --- *** An intrachromosomal transposition whereb ***
< --- *** y the segment between the first two brea ***
< --- *** ks listed is removed and inserted at the ***
< --- ***  third break; the insertion is in cytolo ***
< --- *** gically the same orientation as its flan ***
< --- *** king segments.                           ***
---
> --- *** The segment between the first two breaks ***
> --- ***  listed is removed and inserted at the t ***
> --- *** hird break; the insertion is in cytologi ***
> --- *** cally the same orientation as its flanki ***
> --- *** ng segments.                             ***
34241,34246c29793,29797
< --- *** An insertional duplication where a copy  ***
< --- *** of the segment between the first two bre ***
< --- *** aks listed is inserted at the third brea ***
< --- *** k; the orientation of the insertion with ***
< --- ***  respect to its flanking segments is not ***
< --- ***  recorded.                               ***
---
> --- *** A copy of the segment between the first  ***
> --- *** two breaks listed is inserted at the thi ***
> --- *** rd break; the orientation of the inserti ***
> --- *** on with respect to its flanking segments ***
> --- ***  is not recorded.                        ***
34259c29810
< --- *** relation: unoriented_interchromosomal_transposition ***
---
> --- *** relation: unorient_inter_transposition ***
34262,34267d29812
< --- *** An interchromosomal transposition whereb ***
< --- *** y a copy of the segment between the firs ***
< --- *** t two breaks listed is inserted at the t ***
< --- *** hird break; the orientation of the inser ***
< --- *** tion with respect to its flanking segmen ***
< --- *** ts is not recorded.                      ***
34271c29816
< CREATE VIEW unoriented_interchromosomal_transposition AS
---
> CREATE VIEW unorient_inter_transposition AS
34273c29818
<     feature_id AS unoriented_interchromosomal_transposition_id,
---
>     feature_id AS unorient_inter_transposition_id,
34277c29822
<   WHERE cvterm.name = 'unoriented_interchromosomal_transposition';
---
>   WHERE cvterm.name = 'unorientated_interchromosomal_transposition';
34280c29825
< --- *** relation: unoriented_intrachromosomal_transposition ***
---
> --- *** relation: unorient_intra_transposition ***
34283,34288c29828,29832
< --- *** An intrachromosomal transposition whereb ***
< --- *** y the segment between the first two brea ***
< --- *** ks listed is removed and inserted at the ***
< --- ***  third break; the orientation of the ins ***
< --- *** ertion with respect to its flanking segm ***
< --- *** ents is not recorded.                    ***
---
> --- *** The segment between the first two breaks ***
> --- ***  listed is removed and inserted at the t ***
> --- *** hird break; the orientation of the inser ***
> --- *** tion with respect to its flanking segmen ***
> --- *** ts is not recorded.                      ***
34292c29836
< CREATE VIEW unoriented_intrachromosomal_transposition AS
---
> CREATE VIEW unorient_intra_transposition AS
34294c29838
<     feature_id AS unoriented_intrachromosomal_transposition_id,
---
>     feature_id AS unorient_intra_transposition_id,
34298c29842
<   WHERE cvterm.name = 'unoriented_intrachromosomal_transposition';
---
>   WHERE cvterm.name = 'unorientated_intrachromosomal_transposition';
34319,34322c29863,29865
< --- *** A chromosomal deletion whereby three bre ***
< --- *** aks occur in the same chromosome; one ce ***
< --- *** ntral region is lost, and the other is i ***
< --- *** nverted.                                 ***
---
> --- *** Three breaks in the same chromosome; one ***
> --- ***  central region lost, the other inverted ***
> --- *** .                                        ***
34338,34339d29880
< --- *** A duplication consisting of 2 identical  ***
< --- *** adjacent regions.                        ***
34366a29908,29977
> --- *** relation: seq_variant_causing_uncharacterised_change_in_transcript ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** The nature of the mutation event is eith ***
> --- *** er uncharacterised or only partially cha ***
> --- *** racterised.                              ***
> --- ************************************************
> ---
> 
> CREATE VIEW seq_variant_causing_uncharacterised_change_in_transcript AS
>   SELECT
>     feature_id AS seq_variant_causing_uncharacterised_change_in_transcript_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causing_partially_characterised_change_in_transcript' OR cvterm.name = 'sequence_variant_causing_uncharacterised_change_in_transcript';
> 
> --- ************************************************
> --- *** relation: seq_variant_causing_partly_characterised_change_in_trans ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** The nature of the mutation event is only ***
> --- ***  partially characterised.                ***
> --- ************************************************
> ---
> 
> CREATE VIEW seq_variant_causing_partly_characterised_change_in_trans AS
>   SELECT
>     feature_id AS seq_variant_causing_partly_characterised_change_in_trans_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causing_partially_characterised_change_in_transcript';
> 
> --- ************************************************
> --- *** relation: sequence_variant_affecting_gene_structure ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** A sequence_variant_effect that changes t ***
> --- *** he gene structure.                       ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_affecting_gene_structure AS
>   SELECT
>     feature_id AS sequence_variant_affecting_gene_structure_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causing_gene_fusion' OR cvterm.name = 'sequence_variant_affecting_gene_structure';
> 
> --- ************************************************
> --- *** relation: sequence_variant_causing_gene_fusion ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** A sequence_variant_effect that changes t ***
> --- *** he gene structure by causing a fusion to ***
> --- ***  another gene.                           ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_causing_gene_fusion AS
>   SELECT
>     feature_id AS sequence_variant_causing_gene_fusion_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causing_gene_fusion';
> 
> --- ************************************************
34397c30008,30074
<   WHERE cvterm.name = 'free_chromosome_arm' OR cvterm.name = 'chromosomal_transposition' OR cvterm.name = 'aneuploid_chromosome' OR cvterm.name = 'intrachromosomal_mutation' OR cvterm.name = 'interchromosomal_mutation' OR cvterm.name = 'chromosomal_duplication' OR cvterm.name = 'compound_chromosome' OR cvterm.name = 'autosynaptic_chromosome' OR cvterm.name = 'complex_chromosomal_mutation' OR cvterm.name = 'uncharacterised_chromosomal_mutation' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unoriented_interchromosomal_transposition' OR cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unoriented_intrachromosomal_transposition' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'dexstrosynaptic_chromosome' OR cvterm.name = 'laevosynaptic_chromosome' OR cvterm.name = 'partially_characterised_chromosomal_mutation' OR cvterm.name = 'chromosome_structure_variation';
---
>   WHERE cvterm.name = 'free_chromosome_arm' OR cvterm.name = 'transposition' OR cvterm.name = 'aneuploid_chromosome' OR cvterm.name = 'intrachromosomal_mutation' OR cvterm.name = 'interchromosomal_mutation' OR cvterm.name = 'compound_chromosome' OR cvterm.name = 'autosynaptic_chromosome' OR cvterm.name = 'complex_chromosomal_mutation' OR cvterm.name = 'uncharacterised_chromosomal_mutation' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unorientated_interchromosomal_transposition' OR cvterm.name = 'inversion_derived_aneuploid_chromosome' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_duplication' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'interchromosomal_duplication' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'free_duplication' OR cvterm.name = 'insertional_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'uninverted_insertional_duplication' OR cvterm.name = 'inverted_insertional_duplication' OR cvterm.name = 'unoriented_insertional_duplication' OR cvterm.name = 'chromosomal_deletion' OR cvterm.name = 'chromosomal_inversion' OR cvterm.name = 'intrachromosomal_duplication' OR cvterm.name = 'ring_chromosome' OR cvterm.name = 'chromosome_fission' OR cvterm.name = 'inversion_derived_bipartite_deficiency' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_deficiency_plus_aneuploid' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'pericentric_inversion' OR cvterm.name = 'paracentric_inversion' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'bipartite_inversion' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'deficient_inversion' OR cvterm.name = 'inversion_derived_deficiency_plus_duplication' OR cvterm.name = 'inversion_derived_bipartite_duplication' OR cvterm.name = 'inversion_derived_duplication_plus_aneuploid' OR cvterm.name = 'intrachromosomal_transposition' OR cvterm.name = 'tandem_duplication' OR cvterm.name = 'deficient_intrachromosomal_transposition' OR cvterm.name = 'inverted_intrachromosomal_transposition' OR cvterm.name = 'uninverted_intrachromosomal_transposition' OR cvterm.name = 'unorientated_intrachromosomal_transposition' OR cvterm.name = 'direct_tandem_duplication' OR cvterm.name = 'inverted_tandem_duplication' OR cvterm.name = 'inverted_ring_chromosome' OR cvterm.name = 'free_ring_duplication' OR cvterm.name = 'chromosomal_translocation' OR cvterm.name = 'bipartite_duplication' OR cvterm.name = 'interchromosomal_transposition' OR cvterm.name = 'translocation_element' OR cvterm.name = 'Robertsonian_fusion' OR cvterm.name = 'reciprocal_chromosomal_translocation' OR cvterm.name = 'deficient_translocation' OR cvterm.name = 'inversion_cum_translocation' OR cvterm.name = 'cyclic_translocation' OR cvterm.name = 'deficient_interchromosomal_transposition' OR cvterm.name = 'inverted_interchromosomal_transposition' OR cvterm.name = 'uninverted_interchromosomal_transposition' OR cvterm.name = 'unorientated_interchromosomal_transposition' OR cvterm.name = 'compound_chromosome_arm' OR cvterm.name = 'homo_compound_chromosome' OR cvterm.name = 'hetero_compound_chromosome' OR cvterm.name = 'dexstrosynaptic_chromosome' OR cvterm.name = 'laevosynaptic_chromosome' OR cvterm.name = 'partially_characterised_chromosomal_mutation' OR cvterm.name = 'chromosome_structure_variation';
> 
> --- ************************************************
> --- *** relation: sequence_variant_causes_exon_loss ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** A sequence variant affecting splicing an ***
> --- *** d causes an exon loss.                   ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_causes_exon_loss AS
>   SELECT
>     feature_id AS sequence_variant_causes_exon_loss_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causes_exon_loss';
> 
> --- ************************************************
> --- *** relation: sequence_variant_causes_intron_gain ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- *** A sequence variant effect, causing an in ***
> --- *** tron to be gained by the processed trans ***
> --- *** cript; usually a result of a donor accep ***
> --- *** tor mutation (SO:1000072).               ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_causes_intron_gain AS
>   SELECT
>     feature_id AS sequence_variant_causes_intron_gain_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causes_intron_gain';
> 
> --- ************************************************
> --- *** relation: sequence_variant_causing_cryptic_splice_donor_activation ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_causing_cryptic_splice_donor_activation AS
>   SELECT
>     feature_id AS sequence_variant_causing_cryptic_splice_donor_activation_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causing_cryptic_splice_donor_activation';
> 
> --- ************************************************
> --- *** relation: sequence_variant_causing_cryptic_splice_acceptor_activation ***
> --- *** relation type: VIEW                      ***
> --- ***                                          ***
> --- ************************************************
> ---
> 
> CREATE VIEW sequence_variant_causing_cryptic_splice_acceptor_activation AS
>   SELECT
>     feature_id AS sequence_variant_causing_cryptic_splice_acceptor_activation_id,
>     feature.*
>   FROM
>     feature INNER JOIN cvterm ON (feature.type_id = cvterm.cvterm_id)
>   WHERE cvterm.name = 'sequence_variant_causing_cryptic_splice_acceptor_activation';
35172c30849
<   WHERE cvterm.name = 'pseudogenic_gene_segment' OR cvterm.name = 'gene_segment';
---
>   WHERE cvterm.name = 'gene_segment';
35175d30851
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcription_variant','transcription_variant');
35181d30856
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('elongated_out_of_frame_polypeptide_n_terminal','elongated_out_of_frame_polypeptide_n_terminal');
35184d30858
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rna_polymerase_ii_tata_box','rna_polymerase_ii_tata_box');
35186d30859
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_motif','sequence_motif');
35190d30862
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('d_dj_j_c_cluster','d_dj_j_c_cluster');
35192c30864
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bound_by_factor','bound_by_factor');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('d_dj_j_c_cluster','d_dj_j_c_cluster');
35194c30866
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dinucleotide_repeat_microsatellite_feature','dinucleotide_repeat_microsatellite_feature');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bound_by_factor','bound_by_factor');
35195a30868
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dinucleotide_repeat_microsatellite_feature','dinucleotide_repeat_microsatellite_feature');
35199c30872
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('genotype','so_genotype');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('genotype','genotype');
35203d30875
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('x_element','x_element');
35210d30881
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('variant_phenotype','variant_phenotype');
35212d30882
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl12_acceptor_site','sl12_acceptor_site');
35217d30886
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('3_prime_utr_variant','three_prime_utr_variant');
35223d30891
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('upstream_gene_variant','upstream_gene_variant');
35226,35227d30893
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_post_translational_processing_variant','polypeptide_post_translational_processing_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('2kb_upstream_variant','twokb_upstream_variant');
35231d30896
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('blunt_end_restriction_enzyme_cleavage_site','blunt_end_restriction_enzyme_cleavage_site');
35241d30905
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_tungsten_ion_contact_site','polypeptide_tungsten_ion_contact_site');
35243,35245c30907
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('d_dj_c_cluster','d_dj_c_cluster');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_location','sequence_location');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_nest_right_left_motif','polypeptide_nest_right_left_motif');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_tungsten_ion_contact_site','polypeptide_tungsten_ion_contact_site');
35247,35248c30909,30911
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('leucoplast_gene','leucoplast_gene');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('y_rna','y_rna');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_nest_right_left_motif','polypeptide_nest_right_left_motif');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_location','sequence_location');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('d_dj_c_cluster','d_dj_c_cluster');
35250c30913,30914
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inverted','inverted');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('y_rna','y_rna');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('leucoplast_gene','leucoplast_gene');
35259a30924
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_splice_acceptor','sequence_variant_affecting_splice_acceptor');
35269,35270d30933
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('improved_high_quality_draft','improved_high_quality_draft');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('copy_number_gain','copy_number_gain');
35273d30935
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl8_acceptor_site','sl8_acceptor_site');
35278d30939
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k79_methylation_site','h3k79_methylation_site');
35284,35285c30945,30946
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('centromere_dna_element_ii','centromere_dna_element_ii');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('alteration_attribute','alteration_attribute');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nucleotide_insertion','nucleotide_insertion');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mutaton_causing_inframe_polypeptide_c_terminal_elongation','mutaton_causing_inframe_polypeptide_c_terminal_elongation');
35290d30950
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_fusion','polypeptide_fusion');
35292d30951
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('increased_polyadenylation_variant','increased_polyadenylation_variant');
35300d30958
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('paracentric','paracentric');
35304,35305d30961
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('a_box_type_2','a_box_type_2');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rre_rna','rre_rna');
35306a30963
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rre_rna','rre_rna');
35309d30965
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('copy_number_change','copy_number_change');
35311d30966
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('endosomal_localization_signal','endosomal_localization_signal');
35313d30967
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('scrna_primary_transcript','scrna_primary_transcript');
35315,35317c30969
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('somatic_variant','somatic_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('duplication','duplication');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tmrna_encoding','tmrna_encoding');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('scrna_primary_transcript','scrna_primary_transcript');
35318a30971
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tmrna_encoding','tmrna_encoding');
35320d30972
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inversion','inversion');
35322c30974
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tyrosine_trna_primary_transcript','tyrosine_trna_primary_transcript');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inversion','inversion');
35324,35325c30976
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frt_flanked','frt_flanked');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('spliceosomal_intron_region','spliceosomal_intron_region');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tyrosine_trna_primary_transcript','tyrosine_trna_primary_transcript');
35326a30978,30979
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('spliceosomal_intron_region','spliceosomal_intron_region');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frt_flanked','frt_flanked');
35328d30980
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('decreased_transcription_rate_variant','decreased_transcription_rate_variant');
35330d30981
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rnase_p_rna_gene','rnase_p_rna_gene');
35331a30983,30984
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_affecting_reading_frame','sequence_variation_affecting_reading_frame');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_minus_1_frameshift','sequence_variant_causing_minus_1_frameshift');
35338d30990
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('non_conservative_missense_codon','non_conservative_missense_codon');
35343d30994
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('processed_transcript','processed_transcript');
35347,35348d30997
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('cryptic_splice_site','cryptic_splice_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('pseudogenic_gene_segment','pseudogenic_gene_segment');
35351,35352d30999
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rnase_mrp_rna_gene','rnase_mrp_rna_gene');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('structural_alteration','structural_alteration');
35359d31005
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nested_tandem_repeat','nested_tandem_repeat');
35360a31007
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_gene_structure','sequence_variant_affecting_gene_structure');
35362d31008
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_with_non_canonical_start_codon','gene_with_non_canonical_start_codon');
35366d31011
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k27_trimethylation_site','h3k27_trimethylation_site');
35372d31016
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bred_motif','bred_motif');
35376d31019
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('translational_product_function_variant','translational_product_function_variant');
35382,35383c31025
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('snv','snv');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('direct','direct');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_cryptic_splice_acceptor_activation','sequence_variant_causing_cryptic_splice_acceptor_activation');
35394d31035
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('chromosomal_transposition','chromosomal_transposition');
35405d31045
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('cryptic_splice_site_variant','cryptic_splice_site_variant');
35410d31049
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('pedigree_specific_variant','pedigree_specific_variant');
35414d31052
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('histone_modification','histone_modification');
35421a31060
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_non_synonymous_codon_change_in_transcript','seq_variant_causing_non_synonymous_codon_change_in_trans');
35425a31065,31066
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polya_junction','polya_junction');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_partial_loss_of_function_of_polypeptide','seq_variant_causing_part_loss_of_function_of_polypeptide');
35428d31068
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('amino_acid_insertion','amino_acid_insertion');
35432d31071
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('non_coding_exon_variant','non_coding_exon_variant');
35434,35435d31072
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl5_acceptor_site','sl5_acceptor_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('positively_autoregulated','positively_autoregulated');
35436a31074
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('positively_autoregulated','positively_autoregulated');
35439d31076
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcriptionally_constitutive','transcriptionally_constitutive');
35441c31078,31079
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('variant_origin','variant_origin');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcriptionally_constitutive','transcriptionally_constitutive');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_polypeptide_fusion','sequence_variant_causing_polypeptide_fusion');
35443d31080
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mirna','mirna');
35444a31082
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mirna','mirna');
35446d31083
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h2b_ubiquitination_site','h2b_ubiquitination_site');
35449d31085
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('floxed','floxed');
35451c31087
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('utr_variant','utr_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('floxed','floxed');
35453d31088
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcription_regulatory_region','transcription_regulatory_region');
35454a31090
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_affecting_complex_change_in_transcript','sequence_variation_affecting_complex_change_in_transcript');
35456d31091
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('histone_acylation_region','histone_acylation_region');
35458d31092
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('chromosome_part','chromosome_part');
35460c31094
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('phenylalanyl_trna','phenylalanyl_trna');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('chromosome_part','chromosome_part');
35462c31096
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gc_rich_promoter_region','gc_rich_promoter_region');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('phenylalanyl_trna','phenylalanyl_trna');
35463a31098
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gc_rich_promoter_region','gc_rich_promoter_region');
35465a31101
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('partially_characterised_change_in_dna_sequence','partially_characterised_change_in_dna_sequence');
35469,35472d31104
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('regulatory_region_variant','regulatory_region_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k9_dimethylation_site','h3k9_dimethylation_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('stop_gained','stop_gained');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('telomerase_rna_gene','telomerase_rna_gene');
35476d31107
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('microarray_oligo','microarray_oligo');
35478c31109
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('plus_1_frameshift_variant','plus_1_frameshift_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('microarray_oligo','microarray_oligo');
35483a31115
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_inactive_ligand_binding_site','sequence_variant_causing_inactive_ligand_binding_site');
35484a31117
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_decreasing_level_of_translation_product','sequence_variant_decreasing_level_of_translation_product');
35490d31122
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('exon_loss','exon_loss');
35498d31129
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('free','free');
35500d31130
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h4k5_acylation_site','h4k5_acylation_site');
35503c31133
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nmd_transcript_variant','nmd_transcript_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_gene_fusion','sequence_variant_causing_gene_fusion');
35509d31138
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mathematically_defined_repeat','mathematically_defined_repeat');
35516d31144
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('translational_product_structure_variant','translational_product_structure_variant');
35521d31148
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('increased_transcript_stability_variant','increased_transcript_stability_variant');
35523a31151
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frameshift_sequence_variation','frameshift_sequence_variation');
35526d31153
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('restriction_enzyme_recognition_site','restriction_enzyme_recognition_site');
35529d31155
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('centromere_dna_element_i','centromere_dna_element_i');
35547a31174
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_conservative_amino_acid_substitution','sequence_variant_causing_conservative_amino_acid_sub');
35554,35555d31180
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('increased_translational_product_level','increased_translational_product_level');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('translational_product_level_variant','translational_product_level_variant');
35562c31187
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('chromosomally_aberrant_genome','chromosomally_aberrant_genome');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_amino_acid_substitution','sequence_variant_causing_amino_acid_substitution');
35564a31190
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_affecting_transcript_sequence','sequence_variation_affecting_transcript_sequence');
35565a31192
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_partially_characterised_change_of_translational_product','seq_variant_causing_partly_characterised_change_of_product');
35574a31202
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('three_prime_coding exon_coding_region','three_prime_coding_exon_coding_region');
35575a31204
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_no_3d_structural_change','sequence_variant_causing_no_3d_structural_change');
35578d31206
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('complex_change_in_transcript','complex_change_in_transcript');
35585d31212
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('duplication_attribute','duplication_attribute');
35590d31216
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('three_prime_restriction_enzyme_junction','three_prime_restriction_enzyme_junction');
35594,35595d31219
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intrachromosomal','intrachromosomal');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nuclear_localization_signal','nuclear_localization_signal');
35598d31221
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('plus_2_frameshift variant','plus_2_frameshift_variant');
35600,35601c31223
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('standard_draft','standard_draft');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k79_dimethylation_site','h3k79_dimethylation_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mutation_causing_out_of_frame_polypeptide_c_terminal_elongation','mutation_causing_out_of_frame_polypeptide_c_terminal_elong');
35606d31227
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('epigenetically_modified_region','epigenetically_modified_region');
35610d31230
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intergenic_variant','intergenic_variant');
35613c31233
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('stop_lost','stop_lost');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_increasing_level_of_transcript','sequence_variation_increasing_level_of_transcript');
35618d31237
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('increased_transcription_rate_variant','increased_transcription_rate_variant');
35620d31238
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('complex_3d_structural_variant','complex_3d_structural_variant');
35622d31239
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tasirna_primary_transcript','tasirna_primary_transcript');
35628d31244
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('translation_regulatory_region','translation_regulatory_region');
35630d31245
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('amino_acid_deletion','amino_acid_deletion');
35636,35638d31250
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dce','dce');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('quantitative_variant','quantitative_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('lysosomal_localization_signal','lysosomal_localization_signal');
35639a31252
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_cryptic_splice_activation','sequence_variant_causing_cryptic_splice_activation');
35650d31262
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k9_acetylation_site','h3k9_acetylation_site');
35655a31268
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mutation_causing_inframe_polypeptide_n_terminal_elongation','mutation_causing_inframe_polypeptide_n_terminal_elongation');
35661a31275
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_transcription','sequence_variant_affecting_transcription');
35670d31283
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inframe_codon_loss','inframe_codon_loss');
35673d31285
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('functional_variant','functional_variant');
35675,35676d31286
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcript_stability_variant','transcript_stability_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('5kb_upstream_variant','fivekb_upstream_variant');
35679,35682c31289
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intron_variant','intron_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('regional_centromere_outer_repeat_region','regional_centromere_outer_repeat_region');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('replication_regulatory_region','replication_regulatory_region');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mating_type_region','mating_type_region');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mutation_causing_polypeptide_c_terminal_elongation','mutation_causing_polypeptide_c_terminal_elongation');
35686c31293
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_domain','polypeptide_domain');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_affecting_transcript','sequence_variation_affecting_transcript');
35687a31295,31296
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_domain','polypeptide_domain');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_synonymous_codon_change_in_transcript','seq_variant_causing_synonymous_codon_change_in_trans');
35689,35690d31297
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcript_function_variant','transcript_function_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_member_region','gene_member_region');
35692,35693c31299
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('compensatory_transcript_secondary_structure_variant','compensatory_transcript_secondary_structure_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('methylated_base_feature','methylated_base_feature');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_member_region','gene_member_region');
35694a31301,31302
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_translational_product','sequence_variant_affecting_translational_product');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('methylated_base_feature','methylated_base_feature');
35696a31305
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_polypeptide_elongation','sequence_variant_causing_polypeptide_elongation');
35698a31308
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_3d_structure_of_polypeptide','sequence_variant_affecting_3d_structure_of_polypeptide');
35701d31310
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('schellmann_loop','schellmann_loop');
35702a31312
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('schellmann_loop','schellmann_loop');
35711d31320
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('foldback_element','foldback_element');
35712a31322
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('foldback_element','foldback_element');
35715,35716d31324
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('histone_ubiqitination_site','histone_ubiqitination_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('complex_structural_alteration','complex_structural_alteration');
35720,35722d31327
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polya_sequence','polya_sequence');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('metabolic_island','metabolic_island');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('homologous','homologous');
35724,35725c31329,31331
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h2bk5_monomethylation_site','h2bk5_monomethylation_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_attribute','sequence_attribute');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('homologous','homologous');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('metabolic_island','metabolic_island');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polya_sequence','polya_sequence');
35727,35729c31333
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dart_marker','dart_marker');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nucleotide_motif','nucleotide_motif');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('plus_1_translationally_frameshifted','plus_1_translationally_frameshifted');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_attribute','sequence_attribute');
35731c31335,31336
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('five_prime_noncoding_exon','five_prime_noncoding_exon');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('plus_1_translationally_frameshifted','plus_1_translationally_frameshifted');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nucleotide_motif','nucleotide_motif');
35732a31338
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('five_prime_noncoding_exon','five_prime_noncoding_exon');
35734d31339
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('ds_oligo','ds_oligo');
35736c31341
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('oxys_rna','oxys_rna');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('ds_oligo','ds_oligo');
35737a31343
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('oxys_rna','oxys_rna');
35739,35740d31344
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('coding_exon','coding_exon');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('plus_1_translational_frameshift','plus_1_translational_frameshift');
35742c31346,31347
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k27_dimethylation_site','h3k27_dimethylation_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('plus_1_translational_frameshift','plus_1_translational_frameshift');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('coding_exon','coding_exon');
35744,35745d31348
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mitochondrial_chromosome','mitochondrial_chromosome');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_fragment','gene_fragment');
35747,35748c31350,31351
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frameshift','frameshift');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('propeptide_cleavage_site','propeptide_cleavage_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_fragment','gene_fragment');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mitochondrial_chromosome','mitochondrial_chromosome');
35749a31353,31354
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('propeptide_cleavage_site','propeptide_cleavage_site');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frameshift','frameshift');
35752c31357
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rrna_5_8s','rrna_5_8s');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_compensatory_transcript_secondary_structure_mutation','seq_variant_caus_compensatory_trans_secondary_structure_mut');
35753a31359
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rrna_5_8s','rrna_5_8s');
35756d31361
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_loss_of_function_variant','polypeptide_loss_of_function_variant');
35758d31362
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('whole_genome_sequence_status','whole_genome_sequence_status');
35763d31366
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('common_variant','common_variant');
35769a31373
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_minus_2_frameshift','sequence_variant_causing_minus_2_frameshift');
35770a31375
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_missense_codon_change_in_transcript','sequence_variant_causing_missense_codon_change_in_transcript');
35778d31382
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('loss_of_heterozygosity','loss_of_heterozygosity');
35783d31386
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('translocaton_attribute','translocaton_attribute');
35785d31387
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('terminal_codon_variant','terminal_codon_variant');
35788a31391
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_decreasing_transcript_stability','sequence_variant_decreasing_transcript_stability');
35793a31397
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_effect','sequence_variant_effect');
35804a31409
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_loss_of_function_of_polypeptide','sequence_variant_causing_loss_of_function_of_polypeptide');
35806d31410
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('peptide_localization_signal','peptide_localization_signal');
35808d31411
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k27_acylation_site','h3k27_acylation_site');
35812d31414
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('ligand_binding_site','ligand_binding_site');
35818a31421
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_affecting_level_of_transcript','sequence_variation_affecting_level_of_transcript');
35823a31427
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_complex_3d_structural_change','sequence_variant_causing_complex_3d_structural_change');
35824a31429
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nucleotide_deletion','nucleotide_deletion');
35826d31430
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('u_box','u_box');
35841d31444
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('insertion_attribute','insertion_attribute');
35843d31445
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('chip_seq_region','chip_seq_region');
35845a31448
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_decreasing_level_of_transcript','sequence_variation_decreasing_level_of_transcript');
35851d31453
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('lethal_variant','lethal_variant');
35854d31455
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k36_trimethylation_site','h3k36_trimethylation_site');
35859d31459
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('finished_genome','finished_genome');
35864a31465
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_splice_donor','sequence_variant_affecting_splice_donor');
35868d31468
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl9_acceptor_site','sl9_acceptor_site');
35871c31471
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('retinoic_acid_responsive_element','retinoic_acid_responsive_element');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('modified_base_site','modified_base_site');
35873a31474
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bre_motif','bre_motif');
35875d31475
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dcaps_primer','dcaps_primer');
35878d31477
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('splice_acceptor_variant','splice_acceptor_variant');
35883d31481
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('terminator_codon_variant','terminator_codon_variant');
35891d31488
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tandem','tandem');
35894a31492
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('argenine','argenine');
35895a31494
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_polypeptide_post_translational_processing_change','seq_variant_causing_polypeptide_post_trans_processing_change');
35898d31496
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dce_siii','dce_siii');
35924,35925d31521
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_truncation','polypeptide_truncation');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k14_acetylation_site','h3k14_acetylation_site');
35928d31523
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl7_acceptor_site','sl7_acceptor_site');
35930d31524
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('stop_retained_variant','stop_retained_variant');
35932d31525
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('500b_downstream_variant','fivehundred_b_downstream_variant');
35933a31527
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_level_of_translational_product','sequence_variant_affecting_level_of_translational_product');
35938,35939d31531
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rnapol_ii_core_promoter','rnapol_ii_core_promoter');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k9_methylation_site','h3k9_methylation_site');
35941d31532
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('assortment_derived_variation','assortment_derived_variation');
35953,35954d31543
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nested_transposon','nested_transposon');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tf_binding_site_variant','tf_binding_site_variant');
35958d31546
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('elongated_out_of_frame_polypeptide_c_terminal','elongated_out_of_frame_polypeptide_c_terminal');
35965a31554
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_amino_acid_coding_codon_change_in_transcript','seq_variant_causing_amino_acid_coding_codon_change_in_trans');
35972,35973d31560
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k23_acylation site','h3k23_acylation_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('maternal_variant','maternal_variant');
35976c31563
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('experimental_feature_attribute','experimental_feature_attribute');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_polypeptide_function','sequence_variant_affecting_polypeptide_function');
35979d31565
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intron_gain','intron_gain');
35989d31574
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('conservative_amino_acid_substitution','conservative_amino_acid_substitution');
35993d31577
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('noncontiguous_finished','noncontiguous_finished');
35998,35999d31581
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('upd','upd');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('conservative_missense_codon','conservative_missense_codon');
36011d31592
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('distal_promoter_element','distal_promoter_element');
36014a31596
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_rate_of_transcription','sequence_variant_affecting_rate_of_transcription');
36017d31598
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k4_trimethylation','h3k4_trimethylation');
36022c31603
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('disease_associated_variant','disease_associated_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_conformational_change','sequence_variant_causing_conformational_change');
36031d31611
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('copy_number_loss','copy_number_loss');
36032a31613
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_polyadenylation','sequence_variant_affecting_polyadenylation');
36039d31619
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('elongated_in_frame_polypeptide_c_terminal','elongated_in_frame_polypeptide_c_terminal');
36050a31631
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('uncharacterised_change_in_nucleotide_sequence','uncharacterised_change_in_nucleotide_sequence');
36053d31633
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('variant_frequency','variant_frequency');
36060d31639
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inframe_codon_gain','inframe_codon_gain');
36064d31642
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl3_acceptor_site','sl3_acceptor_site');
36066d31643
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('fixed_variant','fixed_variant');
36070d31646
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_gain_of_function_variant','polypeptide_gain_of_function_variant');
36077d31652
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sticky_end_restriction_enzyme_cleavage_site','sticky_end_restriction_enzyme_cleavage_site');
36080a31656
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('unorientated_interchromosomal_transposition','unorient_inter_transposition');
36082d31657
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h4k16_acylation_site','h4k16_acylation_site');
36085d31659
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('three_prime_coding_exon_coding_region','three_prime_coding_exon_coding_region');
36094d31667
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('complex_change_of_translational_product_variant','complex_change_of_translational_product_variant');
36100d31672
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inframe_variant','inframe_variant');
36103,36104d31674
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_localization_variant','polypeptide_localization_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dce_si','dce_si');
36107d31676
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k27_methylation_site','h3k27_methylation_site');
36115c31684
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('elongated_polypeptide_n_terminal','elongated_polypeptide_n_terminal');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_transcript_processing','sequence_variant_affecting_transcript_processing');
36122d31690
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('breu_motif','breu_motif');
36124d31691
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k9_monomethylation_site','h3k9_monomethylation_site');
36128a31696
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('unorientated_intrachromosomal_transposition','unorient_intra_transposition');
36131d31698
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('decreased_transcript_level_variant','decreased_transcript_level_variant');
36133,36134d31699
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polyadenylation_variant','polyadenylation_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rna_polymerase_iii_tata_box','rna_polymerase_iii_tata_box');
36136d31700
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k18_acetylation_site','h3k18_acetylation_site');
36138a31703
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mutation_causing_polypeptide_n_terminal_elongation','mutation_causing_polypeptide_n_terminal_elongation');
36142,36143d31706
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k27_monomethylation_site','h3k27_monomethylation_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('minus_2_frameshift_variant','minus_2_frameshift_variant');
36154a31718
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causes_exon_loss','sequence_variant_causes_exon_loss');
36158,36160d31721
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('variant_collection','variant_collection');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('cryptic_splice_donor','cryptic_splice_donor');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('assembly_error_correction','assembly_error_correction');
36163d31723
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k4_monomethylation_site','h3k4_monomethylation_site');
36171d31730
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('peptide_collection','peptide_collection');
36181d31739
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('pirna_gene','pirna_gene');
36185d31742
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('cryptic_splice_acceptor','cryptic_splice_acceptor');
36196,36198d31752
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('arginine','arginine');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('linear_double_stranded_rna_chromosome','linear_double_stranded_rna_chromosome');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h4k8_acylation site','h4k8_acylation_site');
36200c31754,31755
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('irrinv_site','irrinv_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('linear_double_stranded_rna_chromosome','linear_double_stranded_rna_chromosome');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_increasing_rate_of_transcription','sequence_variant_increasing_rate_of_transcription');
36202c31757
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('base_call_error_correction','base_call_error_correction');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('irrinv_site','irrinv_site');
36205d31759
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('linear_single_stranded_rna_chromosome','linear_single_stranded_rna_chromosome');
36207,36208c31761
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('proximal_promoter_element','proximal_promoter_element');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('contig_read','contig_read');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('linear_single_stranded_rna_chromosome','linear_single_stranded_rna_chromosome');
36210c31763
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('stop_codon_redefined_as_selenocysteine','stop_codon_redefined_as_selenocysteine');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('contig_read','contig_read');
36211a31765
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('stop_codon_redefined_as_selenocysteine','stop_codon_redefined_as_selenocysteine');
36213d31766
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tmrna','tmrna');
36215c31768
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('synonymous_codon','synonymous_codon');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tmrna','tmrna');
36217d31769
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl4_acceptor_site','sl4_acceptor_site');
36222,36224d31773
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('consensus','consensus');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('positively_autoregulated_gene','positively_autoregulated_gene');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tss_region','tss_region');
36226,36227c31775,31777
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('unitary_pseudogene','unitary_pseudogene');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_metal_contact','polypeptide_metal_contact');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tss_region','tss_region');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('positively_autoregulated_gene','positively_autoregulated_gene');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('consensus','consensus');
36228a31779
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_metal_contact','polypeptide_metal_contact');
36231d31781
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('recombination_signal_sequence','recombination_signal_sequence');
36234d31783
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('v_j_cluster','v_j_cluster');
36236c31785
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('recombination_regulatory_region','recombination_regulatory_region');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('v_j_cluster','v_j_cluster');
36238,36241d31786
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('restriction_enzyme_cleavage_junction','restriction_enzyme_cleavage_junction');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('blunt_end_restriction_enzyme_cleavage_junction','blunt_end_restriction_enzyme_cleavage_junction');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intergenic_region','intergenic_region');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dmv2_motif','dmv2_motif');
36243,36244c31788,31789
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('antisense_rna','antisense_rna');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_feature','sequence_feature');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dmv2_motif','dmv2_motif');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intergenic_region','intergenic_region');
36246c31791,31792
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gamma_turn_classic','gamma_turn_classic');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_feature','sequence_feature');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('antisense_rna','antisense_rna');
36247a31794
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gamma_turn_classic','gamma_turn_classic');
36249d31795
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inverted_ring_chromosome','inverted_ring_chromosome');
36250a31797
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inverted_ring_chromosome','inverted_ring_chromosome');
36252,36253d31798
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('u5_five_prime_ltr_region','u5_five_prime_ltr_region');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bruno_response_element','bruno_response_element');
36254a31800,31801
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bruno_response_element','bruno_response_element');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('u5_five_prime_ltr_region','u5_five_prime_ltr_region');
36256d31802
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('macronucleus_destined_segment','macronucleus_destined_segment');
36257a31804
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('macronucleus_destined_segment','macronucleus_destined_segment');
36259d31805
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('p_element','p_element');
36261d31806
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_fusion','gene_fusion');
36263d31807
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('codon_redefined','codon_redefined');
36265c31809
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('codon_variant','codon_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('codon_redefined','codon_redefined');
36274d31817
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rho_dependent_bacterial_terminator','rho_dependent_bacterial_terminator');
36275a31819
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rho_dependent_bacterial_terminator','rho_dependent_bacterial_terminator');
36278d31821
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('internal_guide_sequence','internal_guide_sequence');
36279a31823
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('internal_guide_sequence','internal_guide_sequence');
36280a31825
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mutation_causing_out_of_frame_polypeptide_n_terminal_elongation','mutation_causing_out_of_frame_polypeptide_n_terminal_elong');
36284,36286d31828
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('trans_spliced','trans_spliced');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('methylation_guide_snorna_primary_transcript','methylation_guide_snorna_primary_transcript');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('leucine','leucine');
36287a31830,31832
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('leucine','leucine');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('methylation_guide_snorna_primary_transcript','methylation_guide_snorna_primary_transcript');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('trans_spliced','trans_spliced');
36289d31833
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('stop_codon','stop_codon');
36291c31835,31836
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('decreased_polyadenylation_variant','decreased_polyadenylation_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('stop_codon','stop_codon');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_no_change_of_translational_product','sequence_variant_causing_no_change_of_translational_product');
36294d31838
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dna_constraint_sequence','dna_constraint_sequence');
36295a31840
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dna_constraint_sequence','dna_constraint_sequence');
36298d31842
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rrna_25s','rrna_25s');
36299a31844
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rrna_25s','rrna_25s');
36301a31847
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_increasing_transcript_stability','sequence_variant_increasing_transcript_stability');
36303,36304d31848
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('dce_sii','dce_sii');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intramembrane_polypeptide_region','intramembrane_polypeptide_region');
36305a31850
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intramembrane_polypeptide_region','intramembrane_polypeptide_region');
36308,36309d31852
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h4k20_monomethylation_site','h4k20_monomethylation_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('ds_dna_viral_sequence','ds_dna_viral_sequence');
36311,36312c31854
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_copper_ion_contact_site','polypeptide_copper_ion_contact_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('scrna_encoding','scrna_encoding');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('ds_dna_viral_sequence','ds_dna_viral_sequence');
36314c31856,31857
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('clone','clone');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('scrna_encoding','scrna_encoding');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_copper_ion_contact_site','polypeptide_copper_ion_contact_site');
36316c31859
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_subarray','gene_subarray');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('clone','clone');
36317a31861
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_subarray','gene_subarray');
36319d31862
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inactive_ligand_binding_site','inactive_ligand_binding_site');
36321c31864
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl6_acceptor_site','sl6_acceptor_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_partially_characterised_change_in_transcript','seq_variant_causing_partly_characterised_change_in_trans');
36323,36324d31865
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('targeting_vector','targeting_vector');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('two_thiocytidine','two_thiocytidine');
36326c31867
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('srp_rna','srp_rna');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('two_thiocytidine','two_thiocytidine');
36328,36329c31869
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rate_of_transcription_variant','rate_of_transcription_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('two_prime_o_methylguanosine','two_prime_o_methylguanosine');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('srp_rna','srp_rna');
36331c31871,31872
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('recombinationally_rearranged_vertebrate_immune_system_gene','recombinationally_rearranged_vertebrate_immune_system_gene');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('two_prime_o_methylguanosine','two_prime_o_methylguanosine');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_polypeptide_truncation','sequence_variant_causing_polypeptide_truncation');
36333c31874
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('splicing_variant','splicing_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('recombinationally_rearranged_vertebrate_immune_system_gene','recombinationally_rearranged_vertebrate_immune_system_gene');
36344d31884
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('paternal_uniparental_disomy','paternal_uniparental_disomy');
36349d31888
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('score','score');
36352,36353c31891
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('downstream_gene_variant','downstream_gene_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl10_accceptor_site','sl10_accceptor_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_splicing','sequence_variant_affecting_splicing');
36356d31893
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('a_box_type_1','a_box_type_1');
36359c31896
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rare_variant','rare_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('morpholino','morpholino');
36361d31897
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('regional_centromere_central_core','regional_centromere_central_core');
36363d31898
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nc_transcript_variant','nc_transcript_variant');
36376d31910
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('decreased_translational_product_level','decreased_translational_product_level');
36379,36381d31912
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('coding_sequence_variant','coding_sequence_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_partial_loss_of_function','polypeptide_partial_loss_of_function');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('five_prime_restriction_enzyme_junction','five_prime_restriction_enzyme_junction');
36382a31914
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_polypeptide_localization_change','sequence_variant_causing_polypeptide_localization_change');
36385d31916
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('disease_causing_variant','disease_causing_variant');
36388d31918
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('duplicated_pseudogene','duplicated_pseudogene');
36390a31921
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_partially_characterised_3d_structural_change','seq_var_causing_partly_characterised_3d_structural_change');
36392d31922
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_function_variant','polypeptide_function_variant');
36396d31925
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('variant_genome','variant_genome');
36397a31927
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_uncharacterised_change_of_translational_product','sequence_variant_causing_uncharacterised_change_of_product');
36402,36403d31931
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('mature_mirna_variant','mature_mirna_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('st_turn_left_handed_type_two','st_turn_left_handed_type_two');
36404a31933
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('st_turn_left_handed_type_two','st_turn_left_handed_type_two');
36413a31943
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_no_change_in_transcript','sequence_variant_causing_no_change_in_transcript');
36419d31948
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('incomplete_terminal_codon_variant','incomplete_terminal_codon_variant');
36431c31960
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('editing_variant','editing_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_nonsense_codon_change_in_transcript','sequence_variant_causing_nonsense_codon_change_in_transcript');
36444d31972
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('high_quality_draft','high_quality_draft');
36446,36447d31973
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('elongated_polypeptide','elongated_polypeptide');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('unique_variant','unique_variant');
36449,36450d31974
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inversion_attribute','inversion_attribute');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nucleotide_binding_site','nucleotide_binding_site');
36452,36453d31975
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('non_synonymous_codon','non_synonymous_codon');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('5kb_downstream_variant','fivekb_downstream_variant');
36459d31980
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('paired_end_fragment','paired_end_fragment');
36467a31989
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_increasing_level_of_translation_product','sequence_variant_increasing_level_of_translation_product');
36471d31992
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('amino_acid_substitution','amino_acid_substitution');
36483d32003
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('x_element_combinatorial_repeat','x_element_combinatorial_repeat');
36497d32016
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k4_methylation_site','h3k4_methylation_site');
36500d32018
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k79_monomethylation_site','h3k79_monomethylation_site');
36507d32024
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('regional_centromere','regional_centromere');
36512,36513d32028
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('reference_genome','reference_genome');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('unoriented_interchromosomal_transposition','unoriented_interchromosomal_transposition');
36518d32032
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('annotation_directed_improved_draft','annotation_directed_improved_draft');
36526c32040
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('3d_polypeptide_structure_variant','threed_polypeptide_structure_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frame_restoring_sequence_variant','frame_restoring_sequence_variant');
36528d32041
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcript_processing_variant','transcript_processing_variant');
36530d32042
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('maternal_uniparental_disomy','maternal_uniparental_disomy');
36532d32043
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('splice_site_variant','splice_site_variant');
36536d32046
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('chromosomal_variation_attribute','chromosomal_variation_attribute');
36542,36543d32051
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('centromeric_repeat','centromeric_repeat');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('rrna_gene','rrna_gene');
36549d32056
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('exon_variant','exon_variant');
36554d32060
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('telomeric_repeat','telomeric_repeat');
36557d32062
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_with_start_codon_cug','gene_with_start_codon_cug');
36562a32068
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_initiator_codon_change_in_transcript','sequence_variant_causing_initiator_codon_change_in_trans');
36568c32074
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k79_trimethylation_site','h3k79_trimethylation_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_nonconservative_amino_acid_substitution','sequence_variant_causing_nonconservative_amino_acid_sub');
36574c32080
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('unoriented_intrachromosomal_transposition','unoriented_intrachromosomal_transposition');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_plus_2_frameshift','sequence_variant_causing_plus_2_frameshift');
36585d32090
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('tasirna','tasirna');
36587,36588d32091
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('regional_centromere_inner_repeat_region','regional_centromere_inner_repeat_region');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('yac_end','yac_end');
36593d32095
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intronic_regulatory_region','intronic_regulatory_region');
36599a32102
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variation_affecting_coding_sequence','sequence_variation_affecting_coding_sequence');
36605d32107
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k4_dimethylation_site','h3k4_dimethylation_site');
36615,36616d32116
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('decreased_transcript_stability_variant','decreased_transcript_stability_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('lincrna_gene','lincrna_gene');
36626c32126
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sl11_acceptor_site','sl11_acceptor_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_decreasing_rate_of_transcription','sequence_variant_decreasing_rate_of_transcription');
36628,36629c32128
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('modified_base','modified_base');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('elongated_polypeptide_c_terminal','elongated_polypeptide_c_terminal');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence variant_affecting_transcript_stability','sequence_variant_affecting_transcript_stability');
36631d32129
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('elongated_in_frame_polypeptide_n_terminal_elongation','elongated_in_frame_polypeptide_n_terminal_elongation');
36634a32133
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_amino_acid_deletion','sequence_variant_causing_amino_acid_deletion');
36639d32137
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('pericentric','pericentric');
36652d32149
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('clone_end','clone_end');
36660,36661d32156
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('missense_codon','missense_codon');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bacterial_rnapol_promoter_sigma54','bacterial_rnapol_promoter_sigma54');
36662a32158
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transposition','transposition');
36665d32160
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('non_conservative_amino_acid_substitution','non_conservative_amino_acid_substitution');
36667,36668d32161
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k36_methylation_site','h3k36_methylation_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcript_variant','transcript_variant');
36671d32163
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('initiator_codon_change','initiator_codon_change');
36682d32173
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polymorphic_variant','polymorphic_variant');
36685d32175
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('single_strand_restriction_enzyme_cleavage_site','single_strand_restriction_enzyme_cleavage_site');
36688d32177
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('minus_24_signal','minus_24_signal');
36690d32178
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h4k_acylation_region','h4k_acylation_region');
36694d32181
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('inactive_catalytic_site','inactive_catalytic_site');
36702d32188
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nested_repeat','nested_repeat');
36711d32196
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('high_identity_region','high_identity_region');
36713d32197
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nuclear_rim_localization_signal','nuclear_rim_localization_signal');
36716d32199
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('5_prime_utr_variant','five_prime_utr_variant');
36726c32209
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('reciprocal','reciprocal');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_amino_acid_insertion','sequence_variant_causing_amino_acid_insertion');
36733d32215
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('variant_quality','variant_quality');
36736c32218
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('y_prime_element','y_prime_element');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_polypeptide_amino_acid_sequence','sequence_variant_affecting_polypeptide_amino_acid_sequence');
36739a32222
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_conservative_missense_codon_change_in_transcript','seq_var_causing_conservative_missense_codon_change_in_trans');
36752,36753d32234
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k9_trimethylation_site','h3k9_trimethylation_site');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('transcript_secondary_structure_variant','transcript_secondary_structure_variant');
36755d32235
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('splice_donor_5th_base_variant','splice_donor_5th_base_variant');
36758d32237
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nucleotide_to_protein_binding_site','nucleotide_to_protein_binding_site');
36763d32241
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('minus_12_signal','minus_12_signal');
36776d32253
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('de_novo_variant','de_novo_variant');
36783d32259
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('open_chromatin_region','open_chromatin_region');
36794d32269
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('heritable_phenotypic_marker','heritable_phenotypic_marker');
36799d32273
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('histone_acetylation_site','histone_acetylation_site');
36803d32276
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('polypeptide_sequence_variant','polypeptide_sequence_variant');
36812d32284
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('experimentally_defined_binding_region','experimentally_defined_binding_region');
36819a32292
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causes_intron_gain','sequence_variant_causes_intron_gain');
36822d32294
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('minus_1_frameshift_variant','minus_1_frameshift_variant');
36828d32299
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frame_restoring_variant','frame_restoring_variant');
36830,36831d32300
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('structural_variant','structural_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('regulatory_promoter_element','regulatory_promoter_element');
36835d32303
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nuclear_export_signal','nuclear_export_signal');
36840d32307
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('bacterial_rnapol_promoter_sigma_70','bacterial_rnapol_promoter_sigma_70');
36844,36846d32310
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('quality_value','quality_value');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('kozak_sequence','kozak_sequence');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('population_specific_variant','population_specific_variant');
36858d32321
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('morpholino_backbone','morpholino_backbone');
36865d32327
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('point_centromere','point_centromere');
36867d32328
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('interchromosomal','interchromosomal');
36886c32347
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('increased_transcript_level_variant','increased_transcript_level_variant');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_gain_of_function_of_polypeptide','sequence_variant_causing_gain_of_function_of_polypeptide');
36891a32353
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_cryptic_splice_donor_activation','sequence_variant_causing_cryptic_splice_donor_activation');
36897d32358
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('promoter_element','promoter_element');
36900a32362,32363
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_nonconservative_missense_codon_change_in_transcript','seq_var_causing_nonconserv_missense_codon_change_in_trans');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_complex_change_of_translational_product','sequence_variant_causing_complex_change_of_product');
36912d32374
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('genetic_marker','genetic_marker');
36913a32376
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_inactive_catalytic_site','sequence_variant_causing_inactive_catalytic_site');
36915d32377
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('isre','isre');
36916a32379
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_terminator_codon_change_in_transcript','sequence_variant_causing_terminator_codon_change_in_trans');
36919d32381
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('intermediate_element','intermediate_element');
36921a32384
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('nucleotide_duplication','nucleotide_duplication');
36925c32388
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('metal_binding_site','metal_binding_site');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_uncharacterised_3d_structural_change','seq_variant_causing_uncharacterised_3d_structural_change');
36928,36929c32391
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('splice_region_variant','splice_region_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('aspe_primer','aspe_primer');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_plus_1_frameshift_mutation','sequence_variant_causing_plus_1_frameshift_mutation');
36933d32394
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k36_dimethylation_site','h3k36_dimethylation_site');
36935,36937d32395
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('gene_variant','gene_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('conformational_change_variant','conformational_change_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('h3k36_monomethylation_site','h3k36_monomethylation_site');
36951c32409,32410
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('centromere_dna_element_iii','centromere_dna_element_iii');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_editing','sequence_variant_affecting_editing');
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_regulatory_region','sequence_variant_affecting_regulatory_region');
36960d32418
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('germline_variant','germline_variant');
36962d32419
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('benign_variant','benign_variant');
36969,36970c32426
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('core_promoter_element','core_promoter_element');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('restriction_enzyme_single_strand_overhang','restriction_enzyme_single_strand_overhang');
---
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_transcript_secondary_structure','sequence_variant_affecting_transcript_secondary_structure');
36972d32427
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('histone_methylation_site','histone_methylation_site');
36978a32434
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_causing_uncharacterised_change_in_transcript','seq_variant_causing_uncharacterised_change_in_transcript');
36981,36982d32436
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('paternal_variant','paternal_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('level_of_transcript_variant','level_of_transcript_variant');
36986a32441
> INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('sequence_variant_affecting_copy_number','sequence_variant_affecting_copy_number');
36998d32452
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('splice_donor_variant','splice_donor_variant');
37004,37006d32457
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('frameshift_variant','frameshift_variant');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('insertional','insertional');
< INSERT INTO sequence_cv_lookup_table (original_cvterm_name,relation_name) VALUES ('non_processed_pseudogene','non_processed_pseudogene');
38470,38472c33921
< -- 05-31-2011
< -- added 'name' column to phenotype. non-unique human readable field.
< --
---
> 
38487,38488c33936
<     uniquename TEXT NOT NULL,
<     name TEXT default null,
---
>     uniquename TEXT NOT NULL,  
38553,38555d34000
< -- changes 2011-05-31
< --   added type_id to genotype (can be null for backward compatibility)
< --   added genotypeprop table
38589c34034
<     uniquename text not null,
---
>     uniquename text not null,      
38591,38592d34035
<     type_id INT NOT NULL,
<     FOREIGN KEY (type_id) REFERENCES cvterm (cvterm_id) ON DELETE CASCADE,
38761,38777d34203
< 
< -- ================================================
< -- TABLE: genotypeprop
< -- ================================================
< create table genotypeprop (
<     genotypeprop_id serial not null,
<     primary key (genotypeprop_id),
<     genotype_id int not null,
<     foreign key (genotype_id) references genotype (genotype_id) on delete cascade INITIALLY DEFERRED,
<     type_id int not null,
<     foreign key (type_id) references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<     value text null,
<     rank int not null default 0,
<     constraint genotypeprop_c1 unique (genotype_id,type_id,rank)
< );
< create index genotypeprop_idx1 on genotypeprop (genotype_id);
< create index genotypeprop_idx2 on genotypeprop (type_id);
39348,39433d34773
< -- =================================================================
< -- Dependencies:
< --
< -- :import cvterm from cv
< -- :import pub from pub
< -- :import contact from contact
< -- =================================================================
< 
< 
< -- ================================================
< -- TABLE: project
< -- ================================================
< 
< create table project (
<     project_id serial not null,  
<     primary key (project_id),
<     name varchar(255) not null,
<     description varchar(255) not null,
<     constraint project_c1 unique (name)
< );
< 
< COMMENT ON TABLE project IS NULL;
< 
< -- ================================================
< -- TABLE: projectprop
< -- ================================================
< 
< CREATE TABLE projectprop (
< 	projectprop_id serial NOT NULL,
< 	PRIMARY KEY (projectprop_id),
< 	project_id integer NOT NULL,
< 	FOREIGN KEY (project_id) REFERENCES project (project_id) ON DELETE CASCADE,
< 	type_id integer NOT NULL,
< 	FOREIGN KEY (type_id) REFERENCES cvterm (cvterm_id) ON DELETE CASCADE,
< 	value text,
< 	rank integer not null default 0,
< 	CONSTRAINT projectprop_c1 UNIQUE (project_id, type_id, rank)
< );
< 
< -- ================================================
< -- TABLE: project_relationship
< -- ================================================
< 
< CREATE TABLE project_relationship (
< 	project_relationship_id serial NOT NULL,
< 	PRIMARY KEY (project_relationship_id),
< 	subject_project_id integer NOT NULL,
< 	FOREIGN KEY (subject_project_id) REFERENCES project (project_id) ON DELETE CASCADE,
< 	object_project_id integer NOT NULL,
< 	FOREIGN KEY (object_project_id) REFERENCES project (project_id) ON DELETE CASCADE,
< 	type_id integer NOT NULL,
< 	FOREIGN KEY (type_id) REFERENCES cvterm (cvterm_id) ON DELETE RESTRICT,
< 	CONSTRAINT project_relationship_c1 UNIQUE (subject_project_id, object_project_id, type_id)
< );
< COMMENT ON TABLE project_relationship IS 'A project can be composed of several smaller scale projects';
< COMMENT ON COLUMN project_relationship.type_id IS 'The type of relationship being stated, such as "is part of".';
< 
< 
< create table project_pub (
<        project_pub_id serial not null,
<        primary key (project_pub_id),
<        project_id int not null,
<        foreign key (project_id) references project (project_id) on delete cascade INITIALLY DEFERRED,
<        pub_id int not null,
<        foreign key (pub_id) references pub (pub_id) on delete cascade INITIALLY DEFERRED,
<        constraint project_pub_c1 unique (project_id,pub_id)
< );
< create index project_pub_idx1 on project_pub (project_id);
< create index project_pub_idx2 on project_pub (pub_id);
< 
< COMMENT ON TABLE project_pub IS 'Linking project(s) to publication(s)';
< 
< 
< create table project_contact (
<        project_contact_id serial not null,
<        primary key (project_contact_id),
<        project_id int not null,
<        foreign key (project_id) references project (project_id) on delete cascade INITIALLY DEFERRED,
<        contact_id int not null,
<        foreign key (contact_id) references contact (contact_id) on delete cascade INITIALLY DEFERRED,
<        constraint project_contact_c1 unique (project_id,contact_id)
< );
< create index project_contact_idx1 on project_contact (project_id);
< create index project_contact_idx2 on project_contact (contact_id);
< 
< COMMENT ON TABLE project_contact IS 'Linking project(s) to contact(s)';
39448c34788
< -- :import project from project
---
> -- :import project from general
40270d35609
< -- :import contact from contact
40281c35620
<        organism_id int,
---
>        organism_id int not null,
40300c35639
< COMMENT ON COLUMN stock.organism_id IS 'The organism_id is the organism to which the stock belongs. This column should only be left blank if the organism cannot be determined.';
---
> COMMENT ON COLUMN stock.organism_id IS 'The organism_id is the organism to which the stock belongs. This column is mandatory.';
40397,40414d35735
< 
< -- ================================================
< -- TABLE: stock_relationship_cvterm
< -- ================================================
< 
< CREATE TABLE stock_relationship_cvterm (
< 	stock_relationship_cvterm_id SERIAL NOT NULL,
< 	PRIMARY KEY (stock_relationship_cvterm_id),
< 	stock_relatiohship_id integer NOT NULL,
< 	FOREIGN KEY (stock_relationship_id) references stock_relationship (stock_relationship_id) ON DELETE CASCADE INITIALLY DEFERRED,
< 	cvterm_id integer NOT NULL,
< 	FOREIGN KEY (cvterm_id) REFERENCES cvterm (cvterm_id) ON DELETE RESTRICT,
< 	pub_id integer,
< 	FOREIGN KEY (pub_id) REFERENCES pub (pub_id) ON DELETE RESTRICT
< );
< COMMENT ON TABLE stock_relationship_cvterm is 'For germplasm maintenance and pedigree data, stock_relationship. type_id will record cvterms such as "is a female parent of", "a parent for mutation", "is a group_id of", "is a source_id of", etc The cvterms for higher categories such as "generative", "derivative" or "maintenance" can be stored in table stock_relationship_cvterm';
< 
< 
40422c35743
<       stock_relationship_id integer not null,
---
>       stock_relationship_id int not null,
40468,40471c35789,35790
<      is_not boolean not null default false,
<      rank integer not null default 0,
<      constraint stock_cvterm_c1 unique (stock_id,cvterm_id,pub_id,rank)
<  );
---
>      constraint stock_cvterm_c1 unique (stock_id,cvterm_id,pub_id)
> );
40480,40519d35798
< -- TABLE: stock_cvtermprop
< -- ================================================
< 
< create table stock_cvtermprop (
<     stock_cvtermprop_id serial not null,
<     primary key (stock_cvtermprop_id),
<     stock_cvterm_id int not null,
<     foreign key (stock_cvterm_id) references stock_cvterm (stock_cvterm_id) on delete cascade,
<     type_id int not null,
<     foreign key (type_id) references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<     value text null,
<     rank int not null default 0,
<     constraint stock_cvtermprop_c1 unique (stock_cvterm_id,type_id,rank)
< );
< create index stock_cvtermprop_idx1 on stock_cvtermprop (stock_cvterm_id);
< create index stock_cvtermprop_idx2 on stock_cvtermprop (type_id);
< 
< COMMENT ON TABLE stock_cvtermprop IS 'Extensible properties for
< stock to cvterm associations. Examples: GO evidence codes;
< qualifiers; metadata such as the date on which the entry was curated
< and the source of the association. See the stockprop table for
< meanings of type_id, value and rank.';
< 
< COMMENT ON COLUMN stock_cvtermprop.type_id IS 'The name of the
< property/slot is a cvterm. The meaning of the property is defined in
< that cvterm. cvterms may come from the OBO evidence code cv.';
< 
< COMMENT ON COLUMN stock_cvtermprop.value IS 'The value of the
< property, represented as text. Numeric values are converted to their
< text representation. This is less efficient than using native database
< types, but is easier to query.';
< 
< COMMENT ON COLUMN stock_cvtermprop.rank IS 'Property-Value
< ordering. Any stock_cvterm can have multiple values for any particular
< property type - these are ordered in a list using rank, counting from
< zero. For properties that are single-valued rather than multi-valued,
< the default 0 value should be used.';
< 
< 
< -- ================================================
40608,40634d35886
< 
< 
< 
< -- ================================================
< -- TABLE: stock_dbxrefprop
< -- ================================================
< 
< create table stock_dbxrefprop (
<        stock_dbxrefprop_id serial not null,
<        primary key (stock_dbxrefprop_id),
<        stock_dbxref_id int not null,
<        foreign key (stock_dbxref_id) references stock_dbxref (stock_dbxref_id) on delete cascade INITIALLY DEFERRED,
<        type_id int not null,
<        foreign key (type_id) references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<        value text null,
<        rank int not null default 0,
<        constraint stock_dbxrefprop_c1 unique (stock_dbxref_id,type_id,rank)
< );
< create index stock_dbxrefprop_idx1 on stock_dbxrefprop (stock_dbxref_id);
< create index stock_dbxrefprop_idx2 on stock_dbxrefprop (type_id);
< 
< COMMENT ON TABLE stock_dbxrefprop IS 'A stock_dbxref can have any number of
< slot-value property tags attached to it. This is useful for storing properties related to dbxref annotations of stocks, such as evidence codes, and references, and metadata, such as create/modify dates. This is an alternative to
< hardcoding a list of columns in the relational schema, and is
< completely extensible. There is a unique constraint, stock_dbxrefprop_c1, for
< the combination of stock_dbxref_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
< 
41036c36288
< SELECT feature_id, 'Ontology_term' AS type,  s.name AS attribute
---
> SELECT feature_id, 'cvterm' AS type,  s.name AS attribute
41040c36292
< SELECT feature_id, 'Dbxref' AS type, d.name || ':' || s.accession AS attribute
---
> SELECT feature_id, 'dbxref' AS type, d.name || ':' || s.accession AS attribute
41042a36295,36309
> --SELECT feature_id, 'expression' AS type, s.description AS attribute
> --FROM expression s, feature_expression fs
> --WHERE fs.expression_id = s.expression_id
> --UNION ALL
> --SELECT fg.feature_id, 'genotype' AS type, g.uniquename||': '||g.description AS attribute
> --FROM gcontext g, feature_gcontext fg
> --WHERE g.gcontext_id = fg.gcontext_id
> --UNION ALL
> --SELECT feature_id, 'genotype' AS type, s.description AS attribute
> --FROM genotype s, feature_genotype fs
> --WHERE fs.genotype_id = s.genotype_id
> --UNION ALL
> --SELECT feature_id, 'phenotype' AS type, s.description AS attribute
> --FROM phenotype s, feature_phenotype fs
> --WHERE fs.phenotype_id = s.phenotype_id
41044c36311
< SELECT feature_id, 'Alias' AS type, s.name AS attribute
---
> SELECT feature_id, 'synonym' AS type, s.name AS attribute
41096,41097c36363
< FROM cvterm WHERE name='part_of' and cv_id in (select cv_id
<   FROM cv WHERE name='relationship'))
---
> FROM cvterm WHERE name='part_of')
41099c36365
< SELECT fr.subject_id as feature_id, 'Derives_from' as type,
---
> SELECT fr.subject_id as feature_id, 'Derived_from' as type,
41103,41104c36369
< FROM cvterm WHERE name='derives_from' and cv_id in (select cv_id
<   FROM cv WHERE name='relationship'))
---
> FROM cvterm WHERE name='derives_from')
41130,41138c36395,36397
< f.feature_id, sf.name, 
<  COALESCE(gffdbx.accession,'.'::varchar(255)), cv.name,
< fl.fmin+1, fl.fmax, 
<  COALESCE(CAST(af.significance AS text), '.'),
<  CASE WHEN fl.strand=-1 THEN '-'
<       WHEN fl.strand=1  THEN '+'
<       ELSE '.'
<  END,
<  COALESCE(CAST(fl.phase AS text), '.'), f.seqlen, f.name, f.organism_id
---
> f.feature_id, sf.name, gffdbx.accession, cv.name,
> fl.fmin+1, fl.fmax, af.significance, fl.strand,
> fl.phase, f.seqlen, f.name, f.organism_id
41160c36419
< SELECT feature_id, ''Ontology_term'' AS type,  s.name AS attribute
---
> SELECT feature_id, ''cvterm'' AS type,  s.name AS attribute
41164c36423
< SELECT feature_id, ''Dbxref'' AS type, d.name || '':'' || s.accession AS attribute
---
> SELECT feature_id, ''dbxref'' AS type, d.name || '':'' || s.accession AS attribute
41166a36426,36441
> --UNION
> --SELECT feature_id, ''expression'' AS type, s.description AS attribute
> --FROM expression s, feature_expression fs
> --WHERE fs.feature_id= $1 AND fs.expression_id = s.expression_id
> --UNION
> --SELECT fg.feature_id, ''genotype'' AS type, g.uniquename||'': ''||g.description AS attribute
> --FROM gcontext g, feature_gcontext fg
> --WHERE fg.feature_id= $1 AND g.gcontext_id = fg.gcontext_id
> --UNION
> --SELECT feature_id, ''genotype'' AS type, s.description AS attribute
> --FROM genotype s, feature_genotype fs
> --WHERE fs.feature_id= $1 AND fs.genotype_id = s.genotype_id
> --UNION
> --SELECT feature_id, ''phenotype'' AS type, s.description AS attribute
> --FROM phenotype s, feature_phenotype fs
> --WHERE fs.feature_id= $1 AND fs.phenotype_id = s.phenotype_id
41168c36443
< SELECT feature_id, ''Alias'' AS type, s.name AS attribute
---
> SELECT feature_id, ''synonym'' AS type, s.name AS attribute
41270,41281d36544
< -- OR, you could execute this command (the materialized view tool has been
< -- updated to allow this all to be supplied on the command line):
< --
< -- (yes, it's all one really long line, to make copy and pasting easier)
< -- gmod_materialized_view_tool.pl --create_view --view_name all_feature_names --table_name public.all_feature_names --refresh_time daily --column_def "feature_id integer,name varchar(255),organism_id integer" --sql_query "SELECT feature_id,CAST(substring(uniquename from 0 for 255) as varchar(255)) as name,organism_id FROM feature UNION SELECT feature_id, name, organism_id FROM feature where name is not null UNION SELECT fs.feature_id,s.name,f.organism_id FROM feature_synonym fs, synonym s, feature f WHERE fs.synonym_id = s.synonym_id AND fs.feature_id = f.feature_id UNION SELECT fp.feature_id, CAST(substring(fp.value from 0 for 255) as varchar(255)) as name,f.organism_id FROM featureprop fp, feature f WHERE f.feature_id = fp.feature_id UNION SELECT fd.feature_id, d.accession, f.organism_id FROM feature_dbxref fd, dbxref d,feature f WHERE fd.dbxref_id = d.dbxref_id AND fd.feature_id = f.feature_id" --index_fields "feature_id,name" --special_index "create index all_feature_names_lower_name on all_feature_names (lower(name))" --yes
< --
< --
< -- OR, even more complicated, you could use this command to create a materialized view
< -- for use with full text searching on PostgreSQL 8.4 or better:
< --
< -- gmod_materialized_view_tool.pl --create_view --view_name all_feature_names --table_name public.all_feature_names --refresh_time daily --column_def "feature_id integer,name varchar(255),organism_id integer,searchable_name tsvector" --sql_query "SELECT feature_id, CAST(substring(uniquename FROM 0 FOR 255) AS varchar(255)) AS name, organism_id, to_tsvector('english', CAST(substring(uniquename FROM 0 FOR 255) AS varchar(255))) AS searchable_name FROM feature UNION SELECT feature_id, name, organism_id, to_tsvector('english', name) AS searchable_name FROM feature WHERE name IS NOT NULL UNION SELECT fs.feature_id, s.name, f.organism_id, to_tsvector('english', s.name) AS searchable_name FROM feature_synonym fs, synonym s, feature f WHERE fs.synonym_id = s.synonym_id AND fs.feature_id = f.feature_id UNION SELECT fp.feature_id, CAST(substring(fp.value FROM 0 FOR 255) AS varchar(255)) AS name, f.organism_id, to_tsvector('english',CAST(substring(fp.value FROM 0 FOR 255) AS varchar(255))) AS searchable_name FROM featureprop fp, feature f WHERE f.feature_id = fp.feature_id UNION SELECT fd.feature_id, d.accession, f.organism_id,to_tsvector('english',d.accession) AS searchable_name FROM feature_dbxref fd, dbxref d,feature f WHERE fd.dbxref_id = d.dbxref_id AND fd.feature_id = f.feature_id" --index_fields "feature_id,name" --special_index "CREATE INDEX searchable_all_feature_names_idx ON all_feature_names USING gin(searchable_name)" --yes 
< --
41620,41889d36882
< -- =================================================================
< -- Dependencies:
< --
< -- :import feature from sequence
< -- :import cvterm from cv
< -- :import pub from pub
< -- :import phenotype from phenotype
< -- :import organism from organism
< -- :import genotype from genetic
< -- :import contact from contact
< -- :import project from project
< -- :import stock from stock
< -- :import synonym
< -- =================================================================
< 
< 
< -- this probably needs some work, depending on how cross-database we
< -- want to be.  In Postgres, at least, there are much better ways to 
< -- represent geo information.
< 
< CREATE TABLE nd_geolocation (
<     nd_geolocation_id serial PRIMARY KEY NOT NULL,
<     description character varying(255),
<     latitude real,
<     longitude real,
<     geodetic_datum character varying(32),
<     altitude real
< );
< 
< COMMENT ON TABLE nd_geolocation IS 'The geo-referencable location of the stock. NOTE: This entity is subject to change as a more general and possibly more OpenGIS-compliant geolocation module may be introduced into Chado.';
< 
< COMMENT ON COLUMN nd_geolocation.description IS 'A textual representation of the location, if this is the original georeference. Optional if the original georeference is available in lat/long coordinates.';
< 
< 
< COMMENT ON COLUMN nd_geolocation.latitude IS 'The decimal latitude coordinate of the georeference, using positive and negative sign to indicate N and S, respectively.';
< 
< COMMENT ON COLUMN nd_geolocation.longitude IS 'The decimal longitude coordinate of the georeference, using positive and negative sign to indicate E and W, respectively.';
< 
< COMMENT ON COLUMN nd_geolocation.geodetic_datum IS 'The geodetic system on which the geo-reference coordinates are based. For geo-references measured between 1984 and 2010, this will typically be WGS84.';
< 
< COMMENT ON COLUMN nd_geolocation.altitude IS 'The altitude (elevation) of the location in meters. If the altitude is only known as a range, this is the average, and altitude_dev will hold half of the width of the range.';
< 
< 
< 
< CREATE TABLE nd_experiment (
<     nd_experiment_id serial PRIMARY KEY NOT NULL,
<     nd_geolocation_id integer NOT NULL references nd_geolocation (nd_geolocation_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED 
< );
< 
< --
< --used to be nd_diversityexperiment_project
< --then was nd_assay_project
< CREATE TABLE nd_experiment_project (
<     nd_experiment_project_id serial PRIMARY KEY NOT NULL,
<     project_id integer not null references project (project_id) on delete cascade INITIALLY DEFERRED,
<     nd_experiment_id integer NOT NULL references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED
< );
< 
< 
< 
< CREATE TABLE nd_experimentprop (
<     nd_experimentprop_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_id integer NOT NULL references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED ,
<     value text null,
<     rank integer NOT NULL default 0,
<     constraint nd_experimentprop_c1 unique (nd_experiment_id,type_id,rank)
< );
< 
< CREATE TABLE nd_experiment_pub (
<        nd_experiment_pub_id serial PRIMARY KEY not null,
<        nd_experiment_id int not null,
<        foreign key (nd_experiment_id) references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<        pub_id int not null,
<        foreign key (pub_id) references pub (pub_id) on delete cascade INITIALLY DEFERRED,
<        constraint nd_experiment_pub_c1 unique (nd_experiment_id,pub_id)
< );
< create index nd_experiment_pub_idx1 on nd_experiment_pub (nd_experiment_id);
< create index nd_experiment_pub_idx2 on nd_experiment_pub (pub_id);
< 
< COMMENT ON TABLE nd_experiment_pub IS 'Linking nd_experiment(s) to publication(s)';
< 
< 
< 
< 
< CREATE TABLE nd_geolocationprop (
<     nd_geolocationprop_id serial PRIMARY KEY NOT NULL,
<     nd_geolocation_id integer NOT NULL references nd_geolocation (nd_geolocation_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<     value text null,
<     rank integer NOT NULL DEFAULT 0,
<     constraint nd_geolocationprop_c1 unique (nd_geolocation_id,type_id,rank)
< );
< 
< COMMENT ON TABLE nd_geolocationprop IS 'Property/value associations for geolocations. This table can store the properties such as location and environment';
< 
< COMMENT ON COLUMN nd_geolocationprop.type_id IS 'The name of the property as a reference to a controlled vocabulary term.';
< 
< COMMENT ON COLUMN nd_geolocationprop.value IS 'The value of the property.';
< 
< COMMENT ON COLUMN nd_geolocationprop.rank IS 'The rank of the property value, if the property has an array of values.';
< 
< 
< CREATE TABLE nd_protocol (
<     nd_protocol_id serial PRIMARY KEY  NOT NULL,
<     name character varying(255) NOT NULL unique,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED
< );
< 
< COMMENT ON TABLE nd_protocol IS 'A protocol can be anything that is done as part of the experiment.';
< 
< COMMENT ON COLUMN nd_protocol.name IS 'The protocol name.';
< 
< CREATE TABLE nd_reagent (
<     nd_reagent_id serial PRIMARY KEY NOT NULL,
<     name character varying(80) NOT NULL,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<     feature_id integer
< );
< 
< COMMENT ON TABLE nd_reagent IS 'A reagent such as a primer, an enzyme, an adapter oligo, a linker oligo. Reagents are used in genotyping experiments, or in any other kind of experiment.';
< 
< COMMENT ON COLUMN nd_reagent.name IS 'The name of the reagent. The name should be unique for a given type.';
< 
< COMMENT ON COLUMN nd_reagent.type_id IS 'The type of the reagent, for example linker oligomer, or forward primer.';
< 
< COMMENT ON COLUMN nd_reagent.feature_id IS 'If the reagent is a primer, the feature that it corresponds to. More generally, the corresponding feature for any reagent that has a sequence that maps to another sequence.';
< 
< 
< 
< CREATE TABLE nd_protocol_reagent (
<     nd_protocol_reagent_id serial PRIMARY KEY NOT NULL,
<     nd_protocol_id integer NOT NULL references nd_protocol (nd_protocol_id) on delete cascade INITIALLY DEFERRED,
<     reagent_id integer NOT NULL references nd_reagent (nd_reagent_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED
< );
< 
< 
< CREATE TABLE nd_protocolprop (
<     nd_protocolprop_id serial PRIMARY KEY NOT NULL,
<     nd_protocol_id integer NOT NULL references nd_protocol (nd_protocol_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<     value text null,
<     rank integer DEFAULT 0 NOT NULL,
<     constraint nd_protocolprop_c1 unique (nd_protocol_id,type_id,rank)
< );
< 
< COMMENT ON TABLE nd_protocolprop IS 'Property/value associations for protocol.';
< 
< COMMENT ON COLUMN nd_protocolprop.nd_protocol_id IS 'The protocol to which the property applies.';
< 
< COMMENT ON COLUMN nd_protocolprop.type_id IS 'The name of the property as a reference to a controlled vocabulary term.';
< 
< COMMENT ON COLUMN nd_protocolprop.value IS 'The value of the property.';
< 
< COMMENT ON COLUMN nd_protocolprop.rank IS 'The rank of the property value, if the property has an array of values.';
< 
< 
< 
< CREATE TABLE nd_experiment_stock (
<     nd_experiment_stock_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_id integer NOT NULL references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<     stock_id integer NOT NULL references stock (stock_id)  on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED
< );
< 
< COMMENT ON TABLE nd_experiment_stock IS 'Part of a stock or a clone of a stock that is used in an experiment';
< 
< 
< COMMENT ON COLUMN nd_experiment_stock.stock_id IS 'stock used in the extraction or the corresponding stock for the clone';
< 
< 
< CREATE TABLE nd_experiment_protocol (
<     nd_experiment_protocol_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_id integer NOT NULL references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<     nd_protocol_id integer NOT NULL references nd_protocol (nd_protocol_id) on delete cascade INITIALLY DEFERRED
< );
< 
< COMMENT ON TABLE nd_experiment_protocol IS 'Linking table: experiments to the protocols they involve.';
< 
< 
< CREATE TABLE nd_experiment_phenotype (
<     nd_experiment_phenotype_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_id integer NOT NULL REFERENCES nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<     phenotype_id integer NOT NULL references phenotype (phenotype_id) on delete cascade INITIALLY DEFERRED,
<    constraint nd_experiment_phenotype_c1 unique (nd_experiment_id,phenotype_id)
< ); 
< 
< COMMENT ON TABLE nd_experiment_phenotype IS 'Linking table: experiments to the phenotypes they produce. There is a one-to-one relationship between an experiment and a phenotype since each phenotype record should point to one experiment. Add a new experiment_id for each phenotype record.';
< 
< CREATE TABLE nd_experiment_genotype (
<     nd_experiment_genotype_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_id integer NOT NULL references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<     genotype_id integer NOT NULL references genotype (genotype_id) on delete cascade INITIALLY DEFERRED ,
<     constraint nd_experiment_genotype_c1 unique (nd_experiment_id,genotype_id)
< );
< 
< COMMENT ON TABLE nd_experiment_genotype IS 'Linking table: experiments to the genotypes they produce. There is a one-to-one relationship between an experiment and a genotype since each genotype record should point to one experiment. Add a new experiment_id for each genotype record.';
< 
< 
< CREATE TABLE nd_reagent_relationship (
<     nd_reagent_relationship_id serial PRIMARY KEY NOT NULL,
<     subject_reagent_id integer NOT NULL references nd_reagent (nd_reagent_id) on delete cascade INITIALLY DEFERRED,
<     object_reagent_id integer NOT NULL  references nd_reagent (nd_reagent_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL  references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED
< );
< 
< COMMENT ON TABLE nd_reagent_relationship IS 'Relationships between reagents. Some reagents form a group. i.e., they are used all together or not at all. Examples are adapter/linker/enzyme experiment reagents.';
< 
< COMMENT ON COLUMN nd_reagent_relationship.subject_reagent_id IS 'The subject reagent in the relationship. In parent/child terminology, the subject is the child. For example, in "linkerA 3prime-overhang-linker enzymeA" linkerA is the subject, 3prime-overhand-linker is the type, and enzymeA is the object.';
< 
< COMMENT ON COLUMN nd_reagent_relationship.object_reagent_id IS 'The object reagent in the relationship. In parent/child terminology, the object is the parent. For example, in "linkerA 3prime-overhang-linker enzymeA" linkerA is the subject, 3prime-overhand-linker is the type, and enzymeA is the object.';
< 
< COMMENT ON COLUMN nd_reagent_relationship.type_id IS 'The type (or predicate) of the relationship. For example, in "linkerA 3prime-overhang-linker enzymeA" linkerA is the subject, 3prime-overhand-linker is the type, and enzymeA is the object.';
< 
< 
< CREATE TABLE nd_reagentprop (
<     nd_reagentprop_id serial PRIMARY KEY NOT NULL,
<     nd_reagent_id integer NOT NULL references nd_reagent (nd_reagent_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<     value text null,
<     rank integer DEFAULT 0 NOT NULL,
<     constraint nd_reagentprop_c1 unique (nd_reagent_id,type_id,rank)
< );
< 
< CREATE TABLE nd_experiment_stockprop (
<     nd_experiment_stockprop_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_stock_id integer NOT NULL references nd_experiment_stock (nd_experiment_stock_id) on delete cascade INITIALLY DEFERRED,
<     type_id integer NOT NULL references cvterm (cvterm_id) on delete cascade INITIALLY DEFERRED,
<     value text null,
<     rank integer DEFAULT 0 NOT NULL,
<     constraint nd_experiment_stockprop_c1 unique (nd_experiment_stock_id,type_id,rank)
< );
< 
< COMMENT ON TABLE nd_experiment_stockprop IS 'Property/value associations for experiment_stocks. This table can store the properties such as treatment';
< 
< COMMENT ON COLUMN nd_experiment_stockprop.nd_experiment_stock_id IS 'The experiment_stock to which the property applies.';
< 
< COMMENT ON COLUMN nd_experiment_stockprop.type_id IS 'The name of the property as a reference to a controlled vocabulary term.';
< 
< COMMENT ON COLUMN nd_experiment_stockprop.value IS 'The value of the property.';
< 
< COMMENT ON COLUMN nd_experiment_stockprop.rank IS 'The rank of the property value, if the property has an array of values.';
< 
< 
< CREATE TABLE nd_experiment_stock_dbxref (
<     nd_experiment_stock_dbxref_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_stock_id integer NOT NULL references nd_experiment_stock (nd_experiment_stock_id) on delete cascade INITIALLY DEFERRED,
<     dbxref_id integer NOT NULL references dbxref (dbxref_id) on delete cascade INITIALLY DEFERRED
< );
< 
< COMMENT ON TABLE nd_experiment_stock_dbxref IS 'Cross-reference experiment_stock to accessions, images, etc';
< 
< 
< 
< CREATE TABLE nd_experiment_dbxref (
<     nd_experiment_dbxref_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_id integer NOT NULL references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<     dbxref_id integer NOT NULL references dbxref (dbxref_id) on delete cascade INITIALLY DEFERRED
< );
< 
< COMMENT ON TABLE nd_experiment_dbxref IS 'Cross-reference experiment to accessions, images, etc';
< 
< 
< CREATE TABLE nd_experiment_contact (
<     nd_experiment_contact_id serial PRIMARY KEY NOT NULL,
<     nd_experiment_id integer NOT NULL references nd_experiment (nd_experiment_id) on delete cascade INITIALLY DEFERRED,
<     contact_id integer NOT NULL references contact (contact_id) on delete cascade INITIALLY DEFERRED
< );
