The Debian packaging of git-annex is maintained in git, using the
merging workflow described in dgit-maint-merge(7).  There isn't a
patch queue that can be represented as a quilt series.

A detailed breakdown of the changes is available from their canonical
representation - git commits in the packaging repository.  For
example, to see the changes made by the Debian maintainer in the first
upload of upstream version 1.2.3, you could use:

    % git clone https://git.dgit.debian.org/git-annex
    % cd git-annex
    % git log --oneline 1.2.3..debian/1.2.3-1 -- . ':!debian'

(If you have dgit, use `dgit clone git-annex`, rather than plain `git
clone`.)

A single combined diff, containing all the changes, follows.
--- git-annex-6.20180227.orig/Test.hs
+++ git-annex-6.20180227/Test.hs
@@ -6,8 +6,6 @@
  -}
 
 {-# LANGUAGE CPP #-}
-{- Avoid optimising this file much, since it's large and does not need it._-}
-{-# OPTIONS_GHC -O1 -optlo-O2 #-}
 
 module Test where
 
