#!/bin/bash
set -e

pkg=elph
PACKAGE=igor

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp /usr/share/doc/${PACKAGE}/examples/* -a "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"
gunzip -r *

echo 'Test 1'
elph genomicVs_with_primers.fasta genomicDs.fasta LEN=5 -s974 -n3
echo '================================'
echo

echo 'Test 2'
elph genomicJs_all_curated.fasta LEN=2 -p15 -b
echo '================================'
echo 'PASS'
